Pseudoliparis swirei (Mariana hadal snailfish): 130204280
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Entry
130204280 CDS
T09868
Symbol
trim25l
Name
(RefSeq) uncharacterized protein trim25l isoform X1
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
130204280 (trim25l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130204280 (trim25l)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130204280 (trim25l)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
130204280 (trim25l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-C3HC4
zf-B_box
zf-C3HC4_3
zf-C3HC4_2
RING_XB3-XBAT31
zf-RING_2
ANCHR-like_BBOX
zf-RING_5
Tweety
HrpB7
Phage_TAC_7
DUF2252
DUF948
Motif
Other DBs
NCBI-GeneID:
130204280
NCBI-ProteinID:
XP_056286847
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Position
14:complement(3055692..3062366)
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AA seq
839 aa
AA seq
DB search
MSSKLWTEEQFNCPVCLDLPNDPATIPCGHSYCMGCIKDYWSKEDPKGGYSCPQCRQSFN
PKPSLSRNTMLAEAVEQLRKGARTADVRESMRNARSSSGAKGKPSSSSSSSSLSSSEVPC
DMCQGAQRAAVKSCLSCMSSFCAAHLKPHSTKKALKAHELIAPTADLAEKICAQHKYLQE
FYCRQCRMFVCWLCTSNQHKGHECVSTKVERLEKQKVLSEMQTETQQRLKVREQELKDMK
KMMEGMKRSAERVHGDTEQTLAELQRSVERLQELLEEALEQAGLEKMGQAQEVVDSLEAE
VQELKSRETQMRDLLLCEDNIRYLEGCESVCSPLESGELPAVTVNPDASFEPMRDAILDL
RDRVEDLCNQELGKITKQVNDVTLFTLKDSNRNAGTKGGILKLFGLGPRTTSSRPPAATP
SITVGGVRAADRRGIGLKSQDVRSRDAPPRADRGNMSSPRLQDRQRREERETVRETNPKP
RPSPTPSPRPSPTPSRKESQSPSLWSRSSQSLAVPTPAPAPSPVPAPSGGTTPAVCCHRQ
KKGSGASLTPISPSISPPGSGFSRMSSISSLFRSHRRGTTAATPASEGGNPWGMAALSET
PAEINPGLFLDLPTPVSAMHSPAFPALREISLDSIQAPEPRSREDFLQYAVTLTLDADTA
HRRLLLAEGDSKATLQPAAQPYPDTPQRFDGWTQVMCVSPLCAQRCYWEVEWRGRGSSMG
VTYGAVARKGTAARSGLGYNAQSWTLELSDACCSAMHDNEKRDIPVTYSPRLGLYLDQST
GTLAFYSVAESMTHLHSFHANFTQPLYAAFGVGSGVGVGLDFALGQFSSSSDSIKLCAM
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgagctccaaactgtggaccgaggagcagttcaactgcccggtgtgtctggacctcccc
aacgacccggccaccatcccctgcggccacagctactgcatgggctgcatcaaggactac
tggagcaaggaggaccccaaggggggctacagctgcccccaatgccggcagtccttcaac
cccaagccctccctgtccaggaacaccatgctggccgaggccgtggagcagctccgcaaa
ggggcccgcacggccgacgtgcgggagtccatgcgcaacgctcgctcctcgtccggagcc
aaagggaagccctcctcctcttcctcctcctcctccctctcctcttcggaggtgccgtgc
gacatgtgccaaggggcgcagcgggcggcggtcaagagctgcctgtcgtgcatgagctcg
ttctgcgccgcgcacctgaagccccactccaccaagaaggccctgaaggcgcacgagctg
atcgcgcccaccgccgacctggcggagaagatctgcgcgcagcacaagtacctgcaggag
ttctactgccgccagtgccggatgttcgtgtgctggctttgcaccagcaaccagcacaag
ggccacgagtgcgtgtccaccaaggtggagcggctggagaagcagaaagtgctgtcggag
atgcagactgagacccagcagaggctgaaagtccgcgagcaggagctgaaggacatgaag
aagatgatggaggggatgaagcgctccgctgagcgggtccacggcgacacggagcagacg
ttggcggagctgcagcgctccgtggagcggctgcaggagctgctggaggaggcgctggag
caggcgggcctggagaagatgggccaggcccaggaggtggtcgacagcctggaggccgag
gtccaggagctgaagagcagggagacgcagatgagagacctgttgctctgcgaggacaac
atccgctacctggagggatgcgagtcggtgtgcagcccgctggagtcgggcgagctgccg
gccgtgacggtgaaccccgatgcgtcctttgagccgatgcgggacgccatcctggacctc
cgggaccgggtggaggacctgtgcaaccaggagctgggcaagatcaccaagcaagtcaac
gacgtcactctgttcacgctgaaggactccaatcggaacgcagggacgaaaggagggatt
ttaaaattgttcggtctgggccctcgcaccacaagcagccgtcctccagcggctacgccc
agcatcacggtgggaggagtgcgggccgccgacagaagaggtatcggcctcaagagtcaa
gacgtgaggagcagagacgcccccccgagagcagacagaggaaacatgagctcgcccaga
ctccaagaccggcagaggagagaggagcgggagacggtgagggagaccaacccaaagccg
agacccagccccactcccagtcccagacccagccccactcccagccgcaaggagtctcag
tccccgtctctctggagcaggtccagccagagcctggctgtcccgactccagccccggcc
ccgagcccggttccagctccatccggaggtacaacaccagccgtttgctgccaccgacaa
aagaaaggttcaggcgcgagtctaacacccatctccccctccatctcccccccaggatcc
ggtttcagccggatgtcgtccatcagcagcctgttccgctcccatcggcgcggcaccacc
gcggccaccccggcgtcagagggaggaaacccatgggggatggccgcactgtccgaaaca
ccggcagaaattaacccgggcctcttcttggacctgcccaccccggtctctgcgatgcac
tcgcccgctttccctgcactgagggagatcagcctggacagcatccaggccccggagccc
cggagccgggaggacttcctgcagtacgccgtgaccttgaccctcgacgccgacacggcc
caccggcggctgcttctcgccgagggcgactccaaagccaccctgcagccggcggcgcag
ccgtaccccgacaccccgcagcgcttcgacggctggacccaggtgatgtgcgtcagcccg
ctgtgcgcccagcgctgctactgggaggtggagtggcgggggcggggatcctcgatgggc
gtgacctacggcgccgtggcgaggaagggcacggccgcccgctcggggctgggctacaac
gcccagtcctggaccctggagctgtcggacgcctgctgctcggccatgcacgacaacgag
aagcgggacatcccggtcacctactccccccgcctgggcctctacttggaccagtccacg
gggacgctggccttctacagcgtggcggagagcatgacgcacctgcacagcttccacgcc
aacttcacgcagccgctgtacgccgccttcggggtgggcagcggggtcggggtggggctg
gacttcgccctgggtcagttcagctccagctccgacagcatcaagctctgcgccatgtga
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