Pseudoliparis swirei (Mariana hadal snailfish): 130204407
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Entry
130204407 CDS
T09868
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130204407
04121 Ubiquitin system [BR:
pswi04121
]
130204407
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
130204407
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
130204407
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
hAT-like_RNase-H
Motif
Other DBs
NCBI-GeneID:
130204407
NCBI-ProteinID:
XP_056287103
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Position
14:10951041..10955966
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AA seq
662 aa
AA seq
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MEGQSSGPSCCVLKLVAHPRAKSKVWKYFGFDTDANGCISHWKRIYCRVCMSQIAYSGNT
SNLSYHLEKNHPLEFGEFVKSNTDQMREAFVTAFSRIKAEPVAAPVQLQAPSLRPENRRH
DDLTLAVINFICEGLYPVSIVEEPTFKSLMSALDPGYSPPSKSDVAVNMLPQMYCRTRDL
VFSELAGVVNCGVTTDLWRSQTQNRTYISLSMHSVNYNSTFGFSMIDKCLKTFEVQEDNA
AENITRSMYEAFVEWGITHKVSGATTNGSVDVGKACSLLELSVEMPCLGHTINRAVEEAF
QLPRVGSFLACCRKLVDHFKEPTLYLLKEKQKQHGLPQCALITDRAGSWLATLAMLQRLK
EQQIAITATPRESSHQFSFEGPHWALLGGLIEVLQPFKVVANMITSCRYPTISMVRPVLH
MLLNTTLKVKEGDLQEICMTKEAILKVLSGTYSQNTQLPQDISTFLNIATFLDPRYKKLP
FLSAEERSKVEGNVMDEAKAILEKQVAEQPGLDEFSVATDEPPSKRRALPRDPARSSTLD
NPLAAIFCQSDTDQSQEELHAQVLEELSNYKSQRVLGLNEDPLLWWSSHVPLFPTLLKVL
QKFWCVPATSVPSHRLLSSSGSALCGKRNRIAPALVDQQIFVYENSRSYYELEPCEEDLE
RH
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcaaagttcaggaccttcttgctgtgtcctcaagctggtggctcacccgcgg
gcaaagagcaaagtgtggaagtactttggctttgacacggatgccaacggctgcatctcg
cactggaagcggatttactgtcgcgtgtgcatgagtcaaatcgcgtactccggaaacacc
tccaacctctcgtaccacctggagaagaaccacccgctggagttcggtgagttcgtgaag
agcaacacggatcagatgcgcgaggcgttcgtcacggcgttctccaggataaaggcggag
cctgtcgccgctccggttcagctgcaggccccgagcctccggcctgaaaaccggcggcac
gatgatctcacactggcagtcatcaacttcatctgtgaggggctgtacccggtgtccatc
gtcgaagagcccaccttcaagagcttgatgagcgccctcgatcccggctactctccaccc
agcaaaagtgacgtggccgttaacatgctccctcagatgtactgccgcacccgggacctg
gtcttcagtgagctcgccggggttgtgaactgtggcgtcaccactgacctctggcgaagc
caaactcagaataggacctatatctcactctccatgcattcagtcaactacaatagtacg
tttggcttctctatgatcgacaagtgtctgaaaacctttgaggtgcaggaggacaacgcg
gccgagaacatcaccagatcgatgtacgaggccttcgtggagtgggggatcacccataaa
gtcagcggggccaccacaaacggctcggtcgacgtgggcaaagcgtgctcgctcctcgag
ctgtccgtggagatgccttgcctgggacataccatcaaccgggccgtcgaggaggccttc
cagctgccgcgggtcggcagctttttggcatgttgccgaaagctggtggaccatttcaaa
gagccgacgctgtatctgctgaaggagaagcagaagcagcatggcctcccgcagtgtgca
ctcatcacagacagggccgggtcttggttggccacgttggcgatgttacaacgactgaag
gagcaacagattgccatcaccgccacgccgagagagagcagtcaccagttcagcttcgaa
ggccctcactgggccttgttgggcggcttgatcgaagtcctccagccttttaaagttgtg
gcgaacatgatcacgtcttgtcggtacccgaccatcagcatggtgaggcccgtgctccac
atgctgctcaacaccaccctgaaggtcaaggaaggggatctccaagagatctgcatgacc
aaagaagccatcctaaaggtgctatccggcacctattcacagaacacgcagctaccgcaa
gacatttcgacgttcctcaacatcgccacctttctggatcctcggtacaagaagttgccg
ttcctgtccgccgaggagcgctccaaagttgagggtaacgtcatggatgaggccaaagcg
atccttgagaagcaggttgcagagcaaccgggcctcgacgagttctccgtggcaaccgac
gagccaccgagcaaaaggcgagcccttcccagagacccggccaggagttctaccctcgac
aaccctctggccgccatcttctgtcagtccgacaccgaccagagccaggaggagctgcat
gctcaggtactggaggagctgagcaactacaagtcccaacgagtcctcggcctgaatgaa
gaccccttactctggtggtccagccacgtccccttgttccccaccctgctcaaggtgctc
cagaagttctggtgcgtcccggccaccagtgtccccagccaccggctgctgagctcttct
gggtcggctctgtgtgggaaacggaaccgcatcgccccggctctggtggaccagcagatc
ttcgtgtacgagaactcgagaagctactatgagctcgaaccctgtgaggaggatttggag
agacactag
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