Pseudoliparis swirei (Mariana hadal snailfish): 130204465
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Entry
130204465 CDS
T09868
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130204465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130204465
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130204465
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
130204465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4
zf-C3HC4_4
TRIM_CC
zf-C3HC4_2
FN3_DSCAM-DSCAML_C
zf-C3HC4_3
PRY
Pur_ac_phosph_N
DapB_N
zf-RING_2
zf-RING_5
Hydro_N_hd
NDNF
Motif
Other DBs
NCBI-GeneID:
130204465
NCBI-ProteinID:
XP_056287190
LinkDB
All DBs
Position
14:complement(5664302..5689117)
Genome browser
AA seq
684 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILISRCAANEPVQSIGAFQCPTCR
YVISLSPERGLEGLKRNVTLQNIIDRVQRASSSAGLPLPLPAPHSGPGEEGGDRLALVPV
NGAMSSPAMPPEPVQCQFCEQDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTGHRLIE
PMPDSHLRGLQCLEHDEEKVNMYCVADDQLICSLCKLVGRHRDHQVAALSDRYEKLKQAL
DSNLTNLIKRNNELESLMGKLIQTCQHVEVNVTRQEGKLLEECDVLIDIIQQRRQIIGNK
IKEGKAQRIRKLAQQITNCKQCIERSSALITQADQTLKETDHARFLQTAKTINERVSMAT
ASTQVLIPEIHLTDTFDTVALDFTREKKLLENLDYLTAPNAPCIREELCTASYDTISVHW
TSDDEFTVVSYELQYAIFTGQSNIASLCNSLESWMIVPNIKQNHYTVHGLQSGTKYIFVV
KAINQAGSRSSDPGTLKTNSQPFKLDPKSAHKKLKVFHDNLTVERDETASKKGHSQERFT
SQSSYGVVGNVYIDSGRHYWEASIGGSTWYAIGIAYKSAPKHEWIGKNSASWVLCRCNNS
WVVRHNSKELGIEPSPHLRRVGVLLDYDAGYVTFYDAVGSQRLHTFHVSFVQPVCPVFNV
WNKCLTILTGLPIPDHLEELEPDN
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggacactctggagtcagagctgacctgcccaatctgcctggagctctttgaagacccg
ctgctgctgccctgcgctcacagcctgtgcttcggctgcgcccatcgcatcctcatctcc
cgctgcgccgccaacgaacccgttcagagcatcggcgccttccagtgccccacctgccga
tatgtcatctccctgagtccggagcgcggactcgaaggactcaagagaaacgtcaccctg
cagaacatcatcgaccgagttcagcgggcctcatcttcggcggggctcccactgccgctg
ccggcgccccacagcgggcccggcgaggaaggcggcgaccggctggcgctggtcccggtc
aacggcgccatgtccagtccggcgatgcccccggagccggtgcagtgccagttctgcgag
caggacccgccgcaggacgcggtgaagacgtgcgtgacgtgcgaggtgtcgtactgcgag
gagtgcctccgggcgacgcaccccaacaagaagccgttcaccggccaccggctcatcgag
cccatgcccgactcccacctgcgggggctccagtgcctggagcacgacgaggagaaggtc
aacatgtactgcgtcgccgacgaccagctgatctgctcgctgtgcaagctggtggggagg
caccgggaccaccaggtggcggcgctgagcgaccgctacgagaaactcaagcaagccctg
gactccaacctgaccaacttgatcaagaggaacaacgagctggagtccctgatgggcaaa
ctgatccagacgtgtcaacatgtggaggtaaacgtgacccgccaagagggcaagctcctg
gaggagtgcgacgtcctgattgacatcatccagcagcggaggcagatcatcggcaacaag
atcaaggaggggaaggcccaaaggattcggaagctcgcccaacagatcaccaactgcaag
cagtgcatcgagaggtcctcggccctcatcacgcaggccgatcagacgctgaaggaaacc
gatcacgcccgcttcctgcagaccgccaagaccatcaacgagagggtttccatggcgact
gcatcgacccaagtgctgatccctgagatacacctgacggacacctttgacacggtggcc
ctggacttcaccagagagaagaagttgctggagaatctggattacctgacagctccgaac
gctccgtgcatcagggaggagttgtgcacggcttcgtacgacaccatctccgtccactgg
acgtccgatgacgagttcaccgtggtgtcctatgagctccagtacgccatcttcaccggg
cagtccaacatcgccagtctgtgcaactcattggagagctggatgattgttcccaacatc
aagcagaaccactacacggtgcacggtctgcagagcggcaccaagtacatctttgttgtc
aaggccatcaaccaagcgggcagccggagcagtgacccggggactctgaagaccaacagc
cagccattcaagctggaccccaaatcggcccacaagaagctgaaggtgttccacgataac
ctgacggtggagcgggacgaaaccgcgtccaagaaaggccacagccaggagcgcttcacc
agccagagcagctacggcgtggtgggcaacgtctacatcgacagcggccgccactactgg
gaggcgtcaatcggagggagcacatggtacgccatcggcatagcctataaatcggccccc
aagcacgagtggatcggcaagaactcggcctcctgggtgctgtgccgctgcaacaactcc
tgggtggtccgccacaacagcaaagagctgggcatcgagccgtcgccccacctgcggcgc
gtcggcgtcctgctggactacgacgccggctacgtgaccttctacgacgccgtgggctcc
cagcggctgcacacgttccacgtgtccttcgtccagcccgtgtgtcccgtgttcaacgtg
tggaacaagtgtctgaccattctcaccggcctccccatcccggaccatctggaggagctg
gagcccgacaactga
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