Pseudoliparis swirei (Mariana hadal snailfish): 130204466
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Entry
130204466 CDS
T09868
Name
(RefSeq) transcription factor Sox-1a-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130204466
Transcription factors [BR:
pswi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
130204466
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SSDB
Ortholog
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GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
130204466
NCBI-ProteinID:
XP_056287191
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All DBs
Position
14:7947372..7949435
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AA seq
354 aa
AA seq
DB search
MYSIMMETDLHSPLVPQTNPSNPGGHAGGIGGGAGGKVPQDRIKRPMNAFMVWSRGQRRK
MAQENPKMHNSEISKRLGVEWKMMTEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKT
LLKKDKYSLAGGLLGSPVGLGMGGGQRLESPGGCHAGANAGYATHVNGWANGTYSGQVAA
AAAAAHAMMQEAQLAYTQHPGSGAHPHHPHAHHHPHHHPHNPQPVHRYDMSALSYSTISN
SQSYMSASPPGYGGITGYTHQHQSSGVSPVSGTLGGTLGSLVKSEPSVSPPVSTARGPPP
CPTGDLRDMISMYLPTGEVAGDASVHSRLHVLHPQHYQSSGSTPVNGTVPLTHI
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatcatgatggagacggacttacattcccccctggtgccccagaccaaccca
tctaaccctgggggacacgcgggaggaataggcgggggggccggcgggaaagtcccccag
gaccgaatcaagagacccatgaacgccttcatggtctggtcccggggccagcggaggaaa
atggcacaggagaaccccaagatgcacaactccgagatcagcaagcggctgggggtcgag
tggaagatgatgaccgaggcggagaagaggccgttcatcgacgaggcgaagcggctgcgc
gccatgcacatgaaggagcacccggactacaagtaccggccgcggaggaagaccaagacg
ctgctgaagaaggacaagtactcactggccggcgggctcctcggctcacctgtgggtctc
gggatgggcggagggcagaggctggagagtcccggcgggtgccacgcgggagccaacgcg
ggctacgcgacgcacgtgaacggctgggccaacggcacgtactctggccaagtggcggct
gcggccgcggcggctcacgccatgatgcaggaggcgcagctggcgtacacgcaacacccg
ggctccggagctcacccgcaccacccgcacgcgcaccaccacccgcatcaccacccgcac
aacccgcagcccgtgcacaggtacgacatgagcgcgttgtcgtacagcaccatctcaaac
tctcagagctacatgagcgcctctccgccgggctacggcgggatcaccggctacactcac
cagcaccaaagctccggtgtgtccccggtgtccgggacgctcggaggaactttggggtcc
ctggtgaaatctgagcctagcgtgagccccccggtttccacggcgcgcggaccaccgccg
tgcccgacgggggaccttcgggacatgatcagcatgtatctgccgaccggcgaggtggcg
ggggacgcctccgttcacagcagactgcacgtgctccacccgcagcactaccagagcagc
ggctccactccggtaaacgggacggtccctctgactcatatttaa
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