Pseudoliparis swirei (Mariana hadal snailfish): 130204657
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Entry
130204657 CDS
T09868
Name
(RefSeq) probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130204657
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
130204657
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_4
UBA_N4BP1
zf-CCCH_2
UBA_N4BP1_C
Motif
Other DBs
NCBI-GeneID:
130204657
NCBI-ProteinID:
XP_056287524
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Position
14:complement(6055595..6068481)
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AA seq
894 aa
AA seq
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MGQKDHVEAGAGHILDLGLDLEYLHVAGSDRQAGGSDGPPAMEAQGERSGNGSAADSPPP
GAAEENSGSDAECEPPPPSSSSTLDECGLTQSKNAHQPLCRAQCVDLGTEGPPSPSPELE
LKSPPSSPREHPEPPSNPSPSEPAPDAGGKEYQAKLEFALKLGYSEETVRLVLSKLGPDT
LINDILGELVKLGTKADGEQPAGSLASTSSSSSSSCGCFDLLDSQGSDSACPPDALSNQD
NLRPVVLDGSNVAMSHGNKEVFSCQGIQLAVDWLLERGHHDITVFVPAWRKEQSRPDAPI
TDQEILRRLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAYESDGIIVSNDNYRDLANEK
PEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKRPIMPEQKKQPCPYGKKCT
YGHKCKYYHPERGAQPQRAVADELRASAKTCVATKNQGDAGLVKSHSVPAGCIEARKGAQ
KRQSDPSTRALSYSDAEEKLARGRAESKEKSVGSVSVAPGGPPASFSLPQDQQCRAVPPH
SVPAPGHDLYPHCESLDLSYYSVTRAYSGRSLSSRRSPDCRFPSDADPRLGSAGSECGSE
SGASSCDSCGDRPCPGCPAETSPDDGVHFANPHGRLYPHHDLCGGLHLADYPATHGCHLR
GQSCAHDQPPPEAHPKRPLCPLPPHLQRQPLTARSSCPGDYRSLAQSNPHPPGSPLGRCL
APTRGESASDSHLYDHLSTSHHHRTKALPGWDTYYRSRYEPSAYQSLPDTRQASSWHAPP
WAQDGYAQHHSSHPALHLSPTHYLNHPPPRAHSPLPPYGAHLAAASHAPPSYMPQHSESP
AHGRFGDAREKVYVNLCNIFPPELVSRVMARSPHVTDPQQLAAAILAEKAQTGY
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgggccagaaggaccatgtggaggcaggagcgggccacatcctcgacctggggctggat
ttggagtatctccacgtagcggggtctgaccggcaggctggcggctctgacgggcccccc
gctatggaggcgcagggggagcgctccggcaacggcagcgccgccgattcccctcctcct
ggcgcggcggaggaaaactctgggtctgatgcagagtgcgagccgccgcctccgtcttcc
agctccaccctcgacgagtgcgggttaactcagagtaaaaacgcccaccagccgctttgt
cgggcccaatgtgtggacttgggcaccgagggtcctccctcgccctcgccagagcttgaa
ctcaagtccccgccgagctcgccacgcgagcacccggagcctccttccaatccctcgccg
tcggagccggcgcccgacgccggcggcaaggagtaccaggcgaagctggagttcgccctg
aagctgggctactcggaggagacggtgcgactggtgctctccaagctgggccccgacacg
ctcatcaacgacatactgggagagctggtcaaactgggcaccaaggcggacggcgagcag
ccggcgggatcgttagcctcgacctcgtcttcttcgtcctcctcttgcggctgttttgat
ttgctggacagccaggggtcggactcggcctgtccgcccgacgccctgagcaaccaggac
aacctgcggccggttgtcttggacggcagcaacgtggccatgagccatggcaacaaggaa
gtgttctcctgccagggcatccagctggctgtggattggttgctggagcgaggccatcac
gacatcacagtgtttgtgccggcttggaggaaggagcagtcgcgccccgacgccccgata
acggatcaggagatcctgcgtcgcctggagaaggaaaagatcctggtcttcactccttcg
cggcgcgtccaaggtcgccgcgtggtttgctacgacgaccgcttcatcgtcaagctggcc
tacgagtccgacggcatcatcgtctccaacgataactaccgagacctggccaacgagaag
cccgagtggaagaagttcatcgacgagcggctgctcatgtattccttcgtcaatgacaaa
ttcatgcccccagacgaccctctcggtcgtcacggccccagcttggacaacttcctgagg
aaaagacccatcatgcccgagcagaagaaacagccctgcccatacgggaagaagtgcact
tacggccacaagtgtaagtactaccacccagaaagaggcgctcagcctcagcgcgccgtg
gcggatgagctgcgagccagtgccaagacctgcgtcgccacaaagaaccagggggacgcc
ggcttggtgaagagccacagcgtgccagctggctgcatcgaggcgaggaaaggcgcccag
aaaaggcagtcggaccccagcacccgagctctgtcgtacagcgacgccgaggagaagctg
gccagaggccgggcggagagcaaagagaagagcgtcggcagcgtgagcgtggccccggga
ggccctccggccagcttcagccttccccaggaccagcagtgcagagcggtgcctccccac
agtgtgccggcccccggccacgacctttaccctcactgcgagtctctggacttgagctac
tactctgtgacgcgcgcttactccggccggagcctctcctcccggcggagcccggactgc
cgcttccccagcgacgccgacccgcgcctcggctcggcgggctccgagtgcggcagcgag
agcggcgcgagcagctgcgactcgtgcggcgacaggccgtgtcccgggtgccccgcggag
acctcgccggacgacggcgtccatttcgccaatccgcacggtcggctgtatccccaccac
gacctgtgcggcggccttcacctcgccgattacccggcgacacacggctgccacctgagg
gggcagtcctgcgctcacgaccagcctccgccggaggctcacccgaagcggcccctctgc
ccgttgcccccgcatctccagcgccagcccctgaccgctcgttccagctgcccgggcgac
taccgctctctagcccagtccaaccctcacccccccggctctcctctgggccgctgcctg
gccccgacgcgaggggagagcgcgtccgactctcacctgtacgaccacctgtccacgtcg
caccaccaccggactaaagcgctgcccggctgggacacgtactaccggtccaggtacgag
ccgtccgcctatcagagtctgccggacacgcggcaggcgtcgtcctggcacgcccctccc
tgggcacaggacggctacgcccagcaccactcctcccatccggctctccacctgtccccg
acgcactacttgaaccacccgccgccccgggcccactctcctctcccgccctacggtgct
cacctcgcggcggcctcccacgcgcctccctcctacatgccgcagcactctgagtcgccg
gcgcacgggcgcttcggggacgcgagggagaaggtgtacgtcaacctgtgtaacatcttc
cccccggagctggtgagccgggtgatggcccggagcccccacgtcacggacccccagcag
ctggcagctgctatacttgcggagaaagcccaaacaggctactga
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