Pseudoliparis swirei (Mariana hadal snailfish): 130204728
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Entry
130204728 CDS
T09868
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 2 subunit alpha-like
KO
K04834
voltage-gated sodium channel type II alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130204728
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
130204728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
ATP-synt_B
Zip
PFF1_TM
FUT8_N_cat
GPHH
IQ
New_glue
Motif
Other DBs
NCBI-GeneID:
130204728
NCBI-ProteinID:
XP_056287648
LinkDB
All DBs
Position
14:4330278..4359203
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AA seq
2028 aa
AA seq
DB search
MAQLLAPPGPDSFCPFGPESLAAIERRIAEEEARRPRAQRRVDDDDDENGPRPNSDLEAG
KSLPFIYGDTPPRLVSTPLEDLDTFYGNQKTFIVLNRGKTIFRFNATPALYILSPFNPLR
RVAIRVLVHSMFSILIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGF
CVGKFTFLRDPWNWLDFNVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVG
ALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRMPFAANATNGSGNGTAAAG
DDDAALYAGILLDGNATESPFNWTEYIGDESNYYVITGHRDALLCGNGSGAGLCPEGYSC
IKAGRNPDYDYTSFDSFGWAFLSLFRLMTQDFWENLYQQTLRTAGKPYMIFFVLVIFLGS
FYLVNLILAVVAMAYDEQNQATIEEAKQKEQEFQAMLEQLKRQQEEAQVAAAAATESGEY
SGRGGPASESTSGTSKLSSKSAKEQRNRRKKRKQREEEEERGGRDKFHKSESEDSIKRTS
FRFSIDANRLSYEKRCSSPNQSLLSIRGSLFSPRRNSRASLFSVRGQARDVGSDNDFADD
EHSTLEESDSRRGSLFLPRRCSAASQTSLGAPRGKMRCAVDCNGVVSLVGGASVTASPAG
LLLPEGTTTDTELKKKRRPGFRKPSMDYLDEPVSRQRAMSVASILTNTMEELEESRQKCP
PCWYRFANTSLIWDCCPAWLKIKDIVKTVVMDPFVDLAITICIVLNTLFMSMEHYPMTKE
FNSVLSVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSLMELGLSNVEGL
SVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKS
YKECVCKISDDCQLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLIVFMMV
MVIGNLVVLNLFLALLLSSFSAENLAATDDDSEMNNLQIAVGRIQRGIAFIKSTVRQFLR
RLCGKSSGPTEESKPLDDLHSNGKGNCISSHATVEIAKEPGVAYVTDGDGRPGGGPAVGE
DPAGKNPTEERDYMSFIHNPSLTVTVPIAVGESDFENQNTEDFSSDSSDVEDSGEKVEVE
PQRLLSSSEGSTVDIRPPGDGADSVEMEPEESMEPEACFTEGCVSRFQCCQINEEDEQFK
NWWTLRRTCFIIVEHNWFESFIIFMILLSSGALAFEDVYIEERRTIKTVLEYADKVFTYI
FILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANAMGYSELTAIKSLRTLRALR
PLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYYCVNTTTD
KIFPIDVVNNKTDCLNLANDGGRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDS
RDVEDQPKYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTAEQ
KKYYNAMKKLGSKKPQKPIPRPTNAFQGCVFDCITKQAFDIVIMVLICLNMVTMMVETDD
QTPDMDRILYWINLVFIVLFTVECVLKMVSLRHYYFTIGWNIFDFVVVILSIVGMFLSKV
IEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIY
AIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSGGWDALLAPILNKREPDCDSR
MEHPGNGYRGDCGNPSVAIFFFVSYIIICFLIVVNMYIAVILENFSVATEESGEPLSEDD
FEMFYEVWERFDADATQFMEYGELSAFADALDPPLRISKPNLLQLISMDLPMVSGERIHC
LDILFAFTKRVLGESGEMDVLRGQMEERFMASNPSKVSYEPITTTLRRKQEETAAAVIQR
FFRRHVMRVAVKKAAALYRERLKEDGAGKLSENSASDKTSAATPWRASPPSYNSVTKSDK
DRYEKEXQRERPKEIDSRLIKEQQQHASETKGTHCLQLLKGGRDVRLL
NT seq
6087 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctgcttgcaccgcccggacctgacagcttctgccccttcggccccgagtcg
ctggccgccatcgagaggcgcatcgccgaggaggaggcccggagaccgcgggcgcagcgc
cgcgtcgacgacgacgacgacgaaaatggaccccggcccaacagcgacctggaggcgggg
aaatccctcccctttatctacggggacacccctccccgcctggtgtccactcctctggag
gacctggacaccttctacggcaatcagaagaccttcatagtattgaatcgcgggaagaca
atcttccgtttcaacgccactcctgccttgtacatcttaagccccttcaaccctctgcgg
agggtagccatcagagttttagtccactcgatgttcagcatattgatcatgttcaccatc
ctgaccaactgtgctttcatgaccctcagtaaccccccggaatgggccaagaatgtagag
tacacattcaccgggatttacaccttcgagtccctcataaagatcctggccaggggcttc
tgcgtgggcaagttcacgttcctgcgggacccgtggaactggctggacttcaacgttatc
ctcatggcatatgtcacagagtttgtggacctgggcaatgtctcagcgctgcgaaccttc
agggttctgcgagccttgaaaactatatcagtcatcccaggcttgaagaccatcgtgggc
gcgctcatccagtccgtgaagaagctgtcggacgtcatgatcctcaccgtcttctgcctc
agcgtcttcgccctcatcggcctgcagctcttcatgggcaacctgaggcagaagtgcgtg
cgcatgccgttcgccgccaacgccaccaacggcagcggcaacggcaccgccgccgccggc
gatgacgacgcggctctctacgccggcatcctgctggacggcaacgccacggagagcccc
ttcaactggacggagtacatcggcgacgagagtaattactatgtcatcacgggccatcgg
gacgctctgctctgtgggaacggcagcggcgctgggctctgtccagaggggtactcgtgc
atcaaagccggccgcaacccagactacgactacaccagcttcgactcgttcggctgggcc
ttcctctccctgttccgactcatgactcaggacttctgggagaacctctaccagcagact
ctgcgcacggcagggaagccctacatgatcttcttcgtgctggtgatcttcctgggctcc
ttctacctggtcaacctgatcctggccgtggtggccatggcctacgacgagcagaaccag
gcgaccatcgaggaggccaagcagaaggagcaggagttccaggccatgctggagcagctg
aagagacagcaggaggaggcgcaggttgccgcggcagcagccacggagagcggggagtac
agcgggcgagggggccccgcctccgagtcgacctcggggacctcgaagctcagctccaag
agcgccaaggagcagcgtaaccggcggaagaagagaaagcagagggaggaggaggaggag
agggggggccgcgacaagttccacaagtctgagtccgaggacagcatcaagagaaccagc
ttccggttctccatcgatgccaacaggctctcttatgagaagagatgctcctcgcccaac
cagtctctcctcagcatccgcggttccctcttctctccccggaggaacagccgcgccagc
ctgttcagcgtccgcggccaggcgcgcgacgtgggctccgacaacgacttcgccgacgac
gagcacagcaccttggaggagagcgacagccggcggggctccctgttcctgccgcgccgc
tgcagcgccgcgagccagaccagcctcggggcgccgcggggcaagatgcgctgcgccgtc
gactgcaacggcgtggtgtctctggtgggcggggcttctgtaaccgcctccccggcaggg
ctcctgctgcccgagggaacgaccacagataccgagctcaagaagaagcggcggccgggt
tttcgcaagccgtccatggattatttagacgaaccggtgagccggcagagagccatgagc
gtggccagcatcctcaccaacaccatggaagagctggaggagtccagacagaaatgcccg
ccttgctggtacaggttcgccaacacctccctgatctgggactgctgccccgcgtggctg
aagatcaaagacatcgtcaagacggtggtcatggacccgttcgtggatctggccatcacc
atatgcatcgtcctcaacaccctgttcatgtccatggagcactaccccatgaccaaagag
ttcaacagcgtgctctccgttggaaacctggtgttcacgggcatcttcacagcggagatg
tgcttcaagatcatcgccctggatccctactactacttccaggagggctggaacatcttc
gacggcatcatcgtcagcctgagcctgatggagctcggcttgtccaacgtggagggcctg
tcggtgctgcgctccttcagactgctgagggtcttcaaattggccaagtcgtggcccact
ttgaacatgctgatcaagatcatcggcaactcggtgggggctctggggaacttgaccctg
gtgctggccatcatcgtcttcatcttcgccgtggtcggcatgcagctgtttggcaagagc
tacaaggagtgcgtgtgcaagatttccgacgactgccagctgccgcgctggcacatgcac
gacttcttccactcgttcctcatcgtgttccgggtgctgtgcggggagtggatcgagacc
atgtgggactgcatggaggtggccgggcagaccatgtgcctgatcgtcttcatgatggtc
atggtcattggaaacctggtggtgttgaacctgttcctggctctcctgctgagctcgttc
agcgcggaaaacctggcggcgaccgacgacgacagcgagatgaacaacctgcagatcgcc
gtgggccggatccagcggggcatcgcgttcatcaaatccaccgtgcggcagttcctccgg
cgcctctgcgggaagagctccggtccgaccgaggagagcaaaccgctggacgacctgcac
agcaacggcaagggcaactgcatctccagccacgccaccgtggagatcgccaaggagccc
ggcgtggcgtacgtgacggacggcgacggccggccgggaggggggccggcggtcggggag
gaccccgcggggaagaacccgacggaggagcgcgactacatgtcgttcattcacaacccc
agcctgacggtcacggtgccgatcgcggtcggcgagtcggacttcgagaaccaaaacacg
gaagacttcagcagcgactcgtcggacgtggaggacagcggagagaaggtcgaagtggag
ccccagcgtctcctcagctcgtcggagggcagcacggtggacatccgcccccctggagac
ggggcggattcggtggagatggagccggaggagtcgatggagccggaggcctgcttcacg
gagggctgcgtgagcaggttccagtgctgccagatcaatgaggaggatgagcaatttaag
aactggtggacactcaggagaacctgcttcatcatcgtggagcacaactggtttgagtcc
ttcatcatattcatgatcctgctgagcagtggagcactggcgttcgaggacgtttacatc
gaggagcgcaggaccatcaaaaccgtgttggagtacgcagacaaggtcttcacctacatc
ttcatcctggagatgctgctgaagtgggtggcgtacggcttcgtcaagtacttcaccaac
gcctggtgctggctggacttcctcatcgtagacgtgtctctggtcagcctcgtagccaac
gccatgggctactctgagctgaccgccatcaaatctctgaggacgctgcgagccctgcgg
cccctgagggccctgtctcggttcgagggcatgagggtggtggtgaacgctctgctgggc
gccatcccctccatcatgaacgtgctgctggtctgcctcatcttctggctcatcttcagc
atcatgggcgtcaacctgttcgcggggaagtactattactgcgtcaacaccaccacggac
aagatcttccccatcgacgtcgtcaacaacaagacggactgcctgaacctggccaacgac
ggcggccgctggaagaacgtcaagatcaacttcgacaacgtcggggccgggtacctggct
ctgctgcaagtggccacgtttaagggctggatggacatcatgtacgcggccgtggactca
agagacgtggaggaccagcccaaatacgaagtgaacttgtacatgtacctgtactttgtc
atcttcatcatcttcggctccttcttcaccctcaacctgttcatcggcgtcatcatcgac
aacttcaaccagcagaagaagaagtttggaggtcaggacatcttcatgaccgcggagcag
aagaagtactacaacgccatgaagaagctgggctccaagaaaccacaaaaaccaatacct
cggccgacgaacgcgttccaaggctgcgtgttcgactgcatcaccaagcaggccttcgac
atcgtgatcatggtcctcatctgcctcaacatggtgaccatgatggtggagacggacgac
cagacgccggacatggaccggatcctgtactggatcaacctcgtcttcatcgtgctcttc
accgtggagtgcgtgctcaagatggtctctctgcgccactactacttcaccatcggttgg
aatatattcgacttcgtggtggtgatcctgtccatcgtcggcatgtttttatccaaagtg
atcgagaagtactttgtgtccccgacgctgttccgggtgatccgcctggcccggatcggc
cggatcctccgcctcatcaaaggggccaagggcatccggacgctcctcttcgccttgatg
atgtcgctgcccgccctgttcaacatcggcctcctcctcttcctcgtcatgttcatctac
gccatcttcggcatgtccaacttcgcctacgtcaagcgcgaggcgggcatcgacgacatg
ttcaacttcgagacgttcgggaacagcatgatctgcctgttccagatcaccacgtcgggc
ggctgggacgcgctgctggcgcccatcctcaacaagagggagcccgactgcgacagccgg
atggagcacccgggcaacggctaccggggcgactgcggcaacccgtcggtggccatcttc
ttcttcgtcagctacatcatcatctgcttcctcatcgtggtcaacatgtacatcgccgtc
atcctggagaacttcagcgtggccacggaggagagcggcgagccgctgagcgaggacgac
ttcgagatgttctacgaggtgtgggagcgcttcgacgccgacgccacgcagttcatggag
tacggcgagctgtcggccttcgccgacgccctggacccgccgctgcgcatctccaagccc
aacctgctgcagctcatctccatggacctgccgatggtgagcggcgagcgcatccactgc
ctggacatcctgttcgccttcaccaagcgggtgctgggcgagagcggcgagatggacgtg
ctgcgcggccagatggaggagcgcttcatggcctccaacccctccaaggtgtcctacgag
cccatcaccaccacgctgcgccgcaagcaggaggagacggcggccgcggtcatccagagg
ttcttccgccgccacgtgatgcgtgtggccgtgaagaaggccgccgccctctacagggag
cggctgaaggaggacggcgcgggcaagctctcggagaactccgcctcggacaaaacgtcg
gcggcgacgccgtggagggcgtcgccgccgtcctacaacagcgtgacgaaatcggacaag
gaccggtacgagaaggagnaacaaagggaaagaccaaaagaaatagactcaagactaata
aaggaacaacaacaacatgcatcggagacaaagggaacacattgtttacagcttctaaag
ggagggcgagacgtccgcttgttgtga
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