Pseudoliparis swirei (Mariana hadal snailfish): 130204944
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Entry
130204944 CDS
T09868
Symbol
mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130204944 (mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130204944 (mid1)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130204944 (mid1)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
130204944 (mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
PRY
zf-C3HC4
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
zf-RING_5
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
130204944
NCBI-ProteinID:
XP_056287939
LinkDB
All DBs
Position
2:complement(7766473..7783166)
Genome browser
AA seq
690 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPSEPIQSINAFQCPTCR
YVITLNQRGLEGLKRNVTLQNIIDRYQKASLSGPNSPNETRRERAVPDGKAMTCPGDRVQ
CQFCEQDPPQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPLLDTHPRGLMCVEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHHVAALGDRFDKLKKPSGRFLCVVGRGHSNQE
ADQQTLDCNLSSLIKRTSELESLMGKLIQTCQHVEVNVSRQENKLLEESDLLITIIQQRR
LIITTKIKEGKSMRLRKLAQQIASCKQCIERSSSLITKADHTLKETDQTRFLQTAKSTCD
RVSMATASSQILLPEMNLSDTFDTFALDFTREKKMLESLDYLTSPNPPTIREELSTASYD
TITVHWTTDDEFSVVSYELQYAIFTSQSNVVSLCNSADSWMIVPNIKQNHYTVHGLQCGT
KYIFILKAINQAGSRSSEPGKLKTNSQPFKLDPKSAHRKLRVSHDSLTVERDETSSKKSH
SQDRFSSQSSYGITGNVYIDSGRHYWETLIGGSSWFAVGIAYKSAPKYEWVGKNSSSWVL
SRCNNTWVVRHNSKEKPIEPSPHLRRLGVLLDYDAGSLSFYDAVGAQHLHTFDIAFAQPV
CPVFNVWNRCLTVLTGLPIPDHLEGTDYNN
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactggagtcggaactgacctgcccaatctgtctggagctcttcgaggacccg
ctgctcttgccttgtgctcacagcctttgtttcaactgtgcccatcgtattctggtctca
cactgcacgcccagcgagccaatacaatccatcaacgccttccagtgcccgacctgtcgc
tatgtcatcaccctcaaccagaggggcctagagggactcaaacgcaacgttacattacag
aacatcatcgatcgctaccagaaagcttctctgagcggaccgaattctcctaacgagact
cggcgcgagcgagccgtccccgacggcaaagccatgacttgtcccggtgaccgggtgcag
tgtcagttctgtgagcaggaccctcctcaggacgctgtgaagacctgcgtcacctgcgag
gtgtcgtactgtgacgagtgtctcaaggccacccaccccaacaagaagccgttcacgggc
caccgtctcatcgagcccttgcttgacacccatccgcgagggctcatgtgtgtggagcat
gaggatgagaaagtcaacatgtactgtgtgacggatgaacagttgatctgtgcgttgtgt
aagctggtgggccgacaccgggaccaccacgttgcagccctcggtgaccggtttgacaaa
ctcaagaaaccgtccggccgctttctctgtgtggtggggcgtggtcattcaaaccaggag
gccgaccagcaaactttggattgcaacctcagcagtctaatcaagaggaccagtgagttg
gaaagtcttatggggaaactcatccaaacctgccaacatgtggaggtaaatgtgtcgcga
caagaaaacaagctgctggaggagtctgacctgctaattactatcatacagcaacgaaga
ctaatcataaccaccaagataaaggagggaaagtctatgcggctgaggaaactagcccag
cagatagccagctgcaagcagtgcattgagaggtcttcctccctcatcactaaggccgac
cacactctcaaggagacggaccagactcgcttcctccaaacggctaaaagcacctgtgac
agagtttccatggcaacggcctcgtctcaaatcctgttaccagaaatgaacctgagtgac
acctttgatacttttgctttggacttcacacgggagaagaaaatgcttgaaagcttggat
tacctcacatcaccaaatccgccaacaatccgtgaggaattaagtacagcttcatacgac
acgatcacagttcactggacaacagatgatgaattctctgttgtgtcatatgaacttcag
tatgccatcttcaccagccaatccaatgttgtcagtttgtgcaactctgctgacagttgg
atgattgtaccaaacatcaagcaaaatcactacactgtccacgggctccagtgtggcacc
aagtacattttcatattgaaggccataaaccaggctgggagccgcagcagtgaaccaggg
aaactcaagaccaacagtcaaccattcaagttagacccaaagtcagctcaccggaagctc
agggtgtcccatgacagcctgacggtggagagggacgagacgtcgtccaagaagagccac
agtcaggaccgcttctccagccaaagcagctacggtatcacagggaatgtctacatcgac
agcggccgccattactgggaaactctgattggaggaagttcatggtttgcagtgggtatt
gcatacaagtcagcaccaaaatatgagtgggtcggcaaaaactcttcttcctgggtactg
tctcgatgcaacaacacgtgggtggtgcgtcacaacagcaaggagaagcccattgagccc
tcaccccacctgcgtcgtctcggagtgctgttggactatgacgctggatcgctgtctttc
tatgacgctgtcggcgcgcagcacttgcatacgttcgatatcgcattcgctcaaccagtc
tgcccagtgttcaatgtgtggaacaggtgcttgacagtcctcaccggactgcccatccca
gatcacttagaggggacagactacaacaactga
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