Pseudoliparis swirei (Mariana hadal snailfish): 130204964
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Entry
130204964 CDS
T09868
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130204964 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130204964 (prpf4)
Spliceosome [BR:
pswi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
130204964 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_EML
PRP4
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_SCAP
Ge1_WD40
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_WDR19_1st
WD40_like
Beta-prop_WDR11_1st
Beta-prop_DCAF12
WD40_RFWD3
DUF7779
Motif
Other DBs
NCBI-GeneID:
130204964
NCBI-ProteinID:
XP_056287995
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Position
15:complement(21718301..21726714)
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AA seq
505 aa
AA seq
DB search
MSDDDDVAPVPKRTRLYYGSLEEKERERLSESGRGGDGVKAGIKAGNINISSGETLELED
RASDRQHDALAAFEQRRRARQITVSTDDTEVKAGLRALGEPIILFGEGPADRRERLRSVL
SVVGPDALKKSRREEERAKRSQDECQQTWYHEGSASLKDARLWLAKYSLPRSLKRLEAAR
TLRAVPEATRAIRQQEQQNSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWSGLCKL
WSVPDCSLIRTLRGHHTNVGAVVFRPESGISLDQSDVNLASCATDGSVKLWNLESDEPVA
DIEGHSDRVSRVSWHPSGRFLGTACYDNSWRLWDLEVQEEILHQEGHSKGVHDIHFHPDG
SLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSVHFSPNGYHLATGSGDNTCKVWELR
NRKCMYTVPAHQNLVSSVRFQPTDGHFLLTGAYDNTAKVWSHPGWTPLKTLAGHEGKVMG
VDVSPDGKLIATCSYDRTFKLWLSE
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgacgacgacgtggctcccgtccccaagaggacgcgtctgtactacggcagc
ctggaggagaaggagcgcgagcgcctgagcgagtcggggaggggcggcgatggcgtgaag
gccggcatcaaggcgggaaacatcaacatctcgtcaggagagactctggaactcgaggac
cgggccagcgaccggcagcacgacgcgctcgctgccttcgagcagcggcggcgagcgcgg
cagatcaccgtgtccaccgacgacacggaggtgaaggccggcctccgggcgctcggggag
ccaatcatattgttcggagagggaccagctgaccgccgggagagacttcgcagtgttctg
tcagttgttggtccggacgctctgaagaagtccagaagagaagaagagagagccaagagg
tcacaggacgagtgccagcagacatggtaccacgaaggctccgcctccctgaaggatgct
cgcctctggttggccaagtactctctgccgaggtcgttgaagcggctggaggcggcgcgc
acgctccgggccgttcccgaggcgaccagggccatccggcagcaggagcagcagaacagc
ctgcggaatctgaacaacttctgcagtcagatcggtgacgatcgaccaatcagcttctgc
cacttcagccccgactccaagatgctggccactgcctcctggagtggcctgtgtaagctg
tggtccgtccccgactgcagcctgattcgtacactcagaggacaccacaccaatgtgggc
gcggtggtcttccgcccggagtccgggatctctctcgaccaatcagacgtcaacttggcc
tcctgcgcgacggacgggtctgtgaagctgtggaacctcgagagcgacgagccggtggcc
gacatcgagggccacagcgaccgagtctccagagtctcctggcacccttctggaaggttc
ctggggaccgcctgctatgataactcgtggcggctctgggacctggaggtccaggaggag
atcctccaccaggagggtcacagcaaaggagtccacgacatccacttccaccccgacggc
tcgctggctgctactggaggcctggatgccttcggtcgggtttgggaccttcggaccgga
cgatgtgtcgtgttcctggagggacacctgaaggagatctacagcgtccacttctccccc
aacgggtatcacctggcgacaggaagtggggacaacacctgtaaggtttgggagctgaga
aacaggaagtgtatgtacacagtccccgcccaccagaacctggtgtcctccgtccgcttc
caacccacagacggtcacttcctgttgaccggagcttacgacaacacggcgaaggtttgg
agtcacccgggatggacgccgctgaagacgctcgccggacatgaggggaaggtgatgggc
gtggacgtgtcgcctgacgggaagctgatcgccacctgctcctacgaccgcaccttcaag
ctgtggctgtcggagtga
DBGET
integrated database retrieval system
