Pseudoliparis swirei (Mariana hadal snailfish): 130205003
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Entry
130205003 CDS
T09868
Symbol
cacna1bb
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04010
MAPK signaling pathway
pswi04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130205003 (cacna1bb)
04020 Calcium signaling pathway
130205003 (cacna1bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130205003 (cacna1bb)
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
130205003 (cacna1bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
130205003
NCBI-ProteinID:
XP_056288071
LinkDB
All DBs
Position
15:3304260..3466743
Genome browser
AA seq
2320 aa
AA seq
DB search
MILATIIANCIVLALEQHLPASDKTPMSERLDDTEPYFIGIFCFEAAIKIIALGFAFHKG
SYLRNGWNAMDFVVVLTGILATVGSDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKA
MVPLLQIGLLLFFAILMFAIIGLDFYMGKFHRTCFRIETGERAADWPCGLEPPARTCPNG
TQCREYWTGPNFGITNFDNILFAVLTVFQCITMEGWVDILYNTNDVAGNAWNWLYFIPLI
IIGSFFMLNLVLGVLSGEFAKERERVEKRQEFLKLRRQQQIERELTGYLEWICKAEEVLL
EEEDEIAEEKSPLDGAWYKRKQNLPVLKRGKVKRGINDLIGDEEGEDPFADISSGPPPGS
PFGRASMKSGGKMDSSSYFRRKEKRMRFFIRRMVKAPSFYCIVLCLVGLNTLCVAIVHYD
QPEWLTTALYTAEFVFLGLFLTEMSLKMYGLGARNYFHSSFNCFDFGVIVGSILEVIWDM
IKPGASFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFAL
LGMQLFGGQFNFEEETPTTNFDTFPAAILTVFQILTGEDWNAVMYHAIESQGGVRRGMFS
SIYFIILTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEQEKAANKKLALQKALEVKEVS
PISAASISIAALVKQREVLSLSRRASINSIQSPKEQQRSAKAMSVWEQRTNQLRRHNVRT
SSEALFNELDPEERLQTASTLHLHPDAKTHLDRPLVVEEEAAGKNGDRSPGGKSPGGRSP
GGKSPGGRSPGGRSPGGKSPGGKSPGGRSPAGRSPDAAWEESGDPGVGDNLHHAHARKHH
RHRDRNGESREGAGEVRGGGRHHTHHSRSRGGHNADGAPARERRGGGGGGGGEGHRQHHQ
AGSPEREEEEREEADDCREERGHRHHHAHRPPKEGNGLMANGERRGRGGGGGGGGGGGGG
GDSNGERKGRCSRLVRAQSTLDAGDCKRNRSGAPGARERQPDSEEDGLASSPLQPMRSPS
SPGEKQEDADNQKNSTRASQAGLNSSSAILIPVTITAPPGDTTIIPMNNIDCDNFRLDEE
KKDLEEDEEAADGPRQILPFSSMFVFGQTNPVRRLCHYVVNLRYFEMCILMVITMSSISL
AAEDPVQANAPRNNVLKYLDYVFTGVFTFEMVFKMIDLGLLLHPGAYFRDLWNILDFIVV
SGALVAFACSGTKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILI
VYMLFMFIFAVIAVQLFKGKFFYCTDESKGLEKDCRGQFLDYDRDDVAAQPREWKKYEFH
YDNVLWAFLTLFTVSTGEGWPLVLKHSVDATYEDQGPSPGFRMEMSIFYVVYFVVFPFFF
VNIFVALIIITFQEQGDKAMSECSLEKNERACIDFAINAKPLTRYMPENKQSYQYKMWKF
VVSPPFEYAIMTLIALNTVVLMMKFYGAPDLYESMLKYLNIVFTALFTLECILKIIAFGP
LNYLKAAWNVFDFVTVLGSITDILVTEIQDKMINLSFLRLFRAARLIKLLRQGYTIRILL
WTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIRLSEETAINHHNNFQTFFQALTLLF
RSATGEAWHEIMLACLSNRPCDSLSGTTGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVI
MDNFEYLTRDASILGPHHLDEYIRVWAEYDPAACGRICYQDMYKLLRFISPPLGLGKKCP
NRVAYKRLVRMNMPIAEDRTVHFTSTLMALIRTALEIKLASGVLAQHLCDADLKREINRV
WPSLSQKTVDLLVTPPKYNELTVGKVYAALMIFDYYKQTCAKRLQQQHSGGQQSKLGALF
RPMMQLTRTQQIEPPFCIPKKPLPPPPEPEAKPEALPTTCIPSVNRDPILNQRSAIKHSQ
SGDVSQAAQQRPRVRRKLQRGQSEDVPYSPQPQEFVELKQVEDESDTEDYPSMEGHCRAA
SLPRLNAEYYRSHPRHAPGTHLAPIVDLSPIRRSASSLMPPRCYREVGGLSEYDLERPGQ
EDRAQHHHHHHRCHRRRDRDKKQKSLDKAASMQPSSTVDSFTDPSADGLSRERARERDRG
RPHERRHHSSAGETQRYFSFSRDQDHSRSAGPSRSTSPGDGQDAVFIKQLGSAVVKAGPG
PLPSGSVTPGRGRRQLPQTPLTPRPAVSYKTAGSSPAPPHQVRVSRGRSEHERLHRGGGG
GHDESPPIPVTRIGSDPDLNRQAQVASRRALLGEDFQDDASGRGAARTGAASTSHGAADA
AAAQGRPGVVPNGYHFTLGVNSASGRGTGSLREREEEDWC
NT seq
6963 nt
NT seq
+upstream
nt +downstream
nt
atgatcctcgccacaattatcgccaactgcatcgtcctggccctggagcagcacctgccc
gccagcgacaagacgcccatgtccgagcgcctggacgacacggagccctacttcattgga
atattctgtttcgaggcggccattaagatcatcgccctgggcttcgcgttccacaaaggc
tcgtatctccgcaacggctggaatgcaatggacttcgtggtcgtcctcacgggcatcctg
gccacggtgggttcagactttgacctgcgaacactgcgggcggtgagagtgctgcggccc
ctgaaactcgtgtcgggaatccccagtctccaggtggtgctgaagtccatcatgaaagcc
atggtgcctctgctgcagatcggcctgctgctcttcttcgccatcctcatgttcgccatc
atcggcctcgacttctacatgggcaagttccaccgcacctgcttcaggatagagacgggt
gagagagcagcagactggccttgtggtctggagcctccggccaggacctgtcccaatggg
acccagtgcagggagtactggaccggacccaactttggcatcaccaactttgacaacatc
ctgtttgcggtgctcacggtgttccagtgcatcacgatggagggatgggtggacatcctc
tacaacaccaacgatgtagcaggaaacgcctggaactggctctacttcatccccctcatc
atcatcggatccttcttcatgctcaacctggtgctcggtgtcctctctggagagtttgcc
aaagagagagagcgcgtggagaagaggcaggagttcctgaagctccggaggcagcagcag
atcgagagagagctcaccgggtacttggagtggatctgcaaagcagaggaggtgttgctg
gaggaggaggatgagatcgcagaggagaagtcccctctggatggagcgtggtacaagagg
aaacagaaccttccagtcctgaaacgaggcaaagtcaagagaggtatcaacgacctgatc
ggcgatgaggagggtgaggatccttttgcagacatctcctccggtccccctcccggctct
ccgtttggtcgggccagcatgaagagcggcggcaagatggacagctcgtcgtacttccgg
cgcaaggagaagaggatgcgcttcttcatccgccgcatggtgaaggctccgagcttctac
tgtatcgtcctgtgcctggtgggcctcaacacgctgtgcgtggccatcgtccactacgac
cagcccgagtggctcacgacggccctctacacggccgagtttgtgttcctgggattgttc
ctgaccgagatgtccctgaagatgtacggcctcggagccaggaattatttccactcctcc
ttcaactgctttgatttcggggtgattgtggggagtattttggaggtgatctgggacatg
atcaaacccggggcctcgtttggcatcagtgtgctgagggccctgcgactgctccggata
ttcaaagtcaccaaatactggaactcgttgaggaacctcgtggtgtccctcctcaattcc
atgaagtccatcatcagcttgctcttcctcctcttcctcttcatcgtggtcttcgctctg
ctgggcatgcagctcttcggaggacagtttaactttgaagaagagacgccgacaaccaac
tttgacaccttcccagcagccatcctcactgtgttccagatcctgaccggcgaggactgg
aacgccgtgatgtaccacgcgatcgagtcccaagggggcgtccgccgagggatgttctcc
tccatctacttcatcatcctcacgctcttcgggaactacaccctcctgaacgtcttcctg
gccatcgccgtcgacaacctggctaatgcacaggagctcaccaaggatgaagaggagcag
gagaaggcggccaataagaagctggccctgcagaaagcgttggaggtgaaggaagtcagc
ccgatatcggcggccagcatctccatcgctgctcttgtaaagcagcgagaggttctctct
ctctctcgcagggcgtccatcaacagcattcagtcacctaaggagcagcagcgctcggca
aaggccatgtcagtgtgggagcagaggaccaatcagctgcggcggcacaacgtgcggacc
agcagcgaggctctgttcaacgagctggacccggaggagcgcctccagacggcctccacc
ctccacctgcacccggacgccaagacccacctggaccggcctctggtggtggaggaggag
gcggcgggcaagaacggggacaggtcgcccggcgggaagtcgcccggcgggaggtcgccc
ggtgggaagtcgcccggcgggaggtcgcccggcgggaggtcgcccggcgggaagtcgccc
ggcgggaagtcgcccggtggcaggtcgcccgccggcaggtcgcccgacgcggcgtgggag
gagtcgggggatcccggggtgggagacaacctccaccacgcgcacgcccggaagcaccac
cgccaccgcgaccggaacggggagagcagggagggggccggcgaggtccgggggggaggg
aggcaccacacccaccacagccggagcagaggaggtcacaacgccgacggcgccccggcg
agagagaggaggggaggaggaggaggaggagggggggaggggcaccggcaacaccaccag
gccggctcccccgagcgggaggaggaggagagggaggaggccgatgactgtcgagaagag
aggggccaccgccaccatcacgcccatcggccgccgaaggaaggcaacgggctgatggcg
aacggagagcggcggggccggggtggtggagggggaggaggaggaggaggaggaggaggg
ggggacagtaacggagagaggaaggggcgctgctcccgtctggtcagagctcagtcgact
ctggacgcaggcgactgtaagaggaacaggagcggagcgccgggcgccagggagaggcag
ccggattctgaggaggacggcctcgcctccagccctctgcagccgatgcggagcccctcg
agtccgggagagaagcaagaggacgccgacaaccagaagaactccaccagggccagccag
gccggcctcaacagcagcagcgccatcctcatccccgtcaccatcaccgccccccccgga
gacaccaccatcatacccatgaacaatatcgactgcgacaacttccgactcgacgaggag
aagaaagacctggaggaggacgaggaggcggctgacgggcctcggcagatccttcccttc
agctccatgttcgtcttcgggcagacgaaccccgtgcggcggctgtgtcactacgtggtc
aatctgcgctactttgagatgtgcatcctgatggtcatcaccatgagcagcatctccctg
gccgccgaggaccccgtgcaggccaacgcgccgcgcaacaacgttctcaagtatctggac
tacgtcttcacgggcgtcttcaccttcgagatggtgttcaagatgatcgacttgggactg
ctgctccaccccggagcttatttccgtgacctgtggaacattctggacttcatcgtggtc
agcggggccctggtggccttcgcctgctcagggacgaagggcaaggacatcaacaccatc
aagtccctgagggtcctccgagtcctgcggccactcaagaccattaagcgtcttcccaag
ctgaaggcggtgttcgactgcgtggtgaactccctgaagaacgtgctcaacatcctcatc
gtctacatgctcttcatgttcatcttcgccgtcatcgccgtgcagctcttcaaagggaag
ttcttctactgcaccgacgagtccaaaggcctggagaaggactgcaggggtcagtttctg
gattacgaccgggacgacgtggcggctcagcccagagagtggaagaagtatgagttccac
tacgacaacgttctgtgggccttcctgacgctcttcaccgtgtccacgggggaaggatgg
ccgctggtcctgaagcactcggtggacgctacgtacgaggaccagggccccagccccggc
ttccgcatggagatgtccatcttctacgtggtctacttcgtggtgttccccttcttcttc
gtcaacatcttcgtggctttgatcatcatcaccttccaggagcaaggagacaaggccatg
tcggagtgcagcctggagaagaacgagagggcttgcatcgactttgccatcaacgccaag
ccgctgaccagatacatgccggaaaacaagcagtcctaccagtacaagatgtggaagttc
gtggtgtcgccgccgttcgagtacgccatcatgactttaattgccctcaacacggtcgtg
ctgatgatgaagttctacggagctccggacctgtacgagtccatgctgaaatacctgaac
atcgtcttcacggccctcttcacgctggaatgcatcctgaagatcattgccttcggtcca
ctgaattacctgaaagccgcctggaacgtgttcgacttcgtgaccgtgctcggaagcatc
acagacatcctggtcacagagattcaggacaagatgatcaacctgagcttcctgaggctg
ttccgggcggctcgtctcatcaagctgctgcggcagggctacaccatccgcatcctgctg
tggactttcgtccagtccttcaaggcgctgccgtacgtctgcctgctcatcgccatgctg
ttcttcatctacgccatcattggaatgcaggtctttgggaacatccggctgagcgaagag
acggcgataaaccaccacaacaacttccagacctttttccaggccttgactcttctcttc
aggagtgcgacgggcgaggcgtggcatgagatcatgttggcgtgcctcagtaaccggccg
tgtgacagcctctcgggaaccacggggaaggagtgcgggagcgacttcgcctacttctac
tttgtgtccttcatcttcctctgctccttcctgatgttgaacctgttcgtcgccgtcatc
atggacaactttgagtacctgacgagagacgcctccatcctggggcctcaccacctggac
gaatacatccgcgtgtgggcggagtacgaccctgcagcctgcgggaggatatgctatcag
gatatgtacaaattgttgcgttttatctcccctcccctgggcctggggaagaagtgcccc
aacagggtggcgtataagcggttggtgaggatgaacatgcccattgcagaagaccggacg
gtgcacttcacctccaccctgatggccctgatccgcaccgccctggagatcaaactggca
tctggcgtcctggcgcagcatttgtgcgacgccgacctgaagagggagataaaccgggtc
tggcccagcctatcacagaagaccgtcgacctgctggtgacgccccctaaatacaacgag
ctgactgtggggaaagtctacgccgctctgatgatctttgactactacaagcagacttgt
gccaagagactccagcagcagcattcagggggccagcagagtaaactgggggcgttgttc
cgtcccatgatgcaactcactcgcacacagcaaatagagccaccgttctgcatccccaag
aagcccctcccacctccacctgagccagaggctaagccagaagcactgcccaccacctgc
atcccctcggtgaacagggaccccatactaaaccagagaagtgccatcaaacattcccag
tcgggggatgtctctcaggcggcacaacagaggcccagagtccggaggaaactccagaga
ggccagtcagaggacgtgccctattccccccagcctcaggaatttgtggaactgaagcaa
gtggaggacgaatcggacacagaggactatccgagcatggagggccactgccgagcggct
tctctgccccgactcaacgcagagtactaccggagccaccctcgccacgcccccgggacc
cacctggcaccaatcgttgacctcagtcccatcaggcgctcggcgtcctcgctgatgccg
ccgcgttgctaccgggaggtcggcggcctgtcggagtacgacctggagcggcccggccag
gaggaccgagcccagcaccaccaccaccaccaccgctgccatcgccggagggacagagac
aagaagcagaagtctctggacaaagctgcgtccatgcagccgtccagcaccgtcgactcc
ttcaccgacccctcggccgacgggctgtccagggagcgagcgagggagcgtgaccgcggc
cggcctcacgagcggcggcaccactcgtccgccggggagacgcagcgctacttctccttc
agccgggaccaggaccacagccggtccgccgggcccagccggtccacgtcgcccggagac
gggcaggacgccgtcttcatcaagcagctcggtagcgctgtggtcaaagccggccccgga
ccgctcccctccggttccgtcactccgggccgcgggcgccgccagctccctcagacgccg
ctgaccccgcgccccgccgtctcctacaagaccgccggctcctcgccggcgccgccccac
caggtccgcgtcagccgcggccgctcggagcacgagcggctccaccgcggcggcggcggc
ggccacgacgagtccccgccgatccccgtcacgcgcatcggctcggaccccgacctgaac
cggcaggcgcaggtcgcctcccggcgggcgctcctcggggaggacttccaggacgacgcg
agcggccgcggcgcggccagaaccggcgccgcctcgacctctcacggagcagcggacgcc
gccgccgcgcaggggaggccgggcgtggttcccaacgggtaccacttcaccctcggggtc
aactccgcctccgggcgaggaacgggaagtctccgggagcgggaggaggaggactggtgc
taa
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