Pseudoliparis swirei (Mariana hadal snailfish): 130205036
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Entry
130205036 CDS
T09868
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1-like isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130205036
03041 Spliceosome [BR:
pswi03041
]
130205036
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
130205036
Spliceosome [BR:
pswi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
130205036
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_Nup35
Nup35_RRM_2
RRM_3
Calcipressin
Motif
Other DBs
NCBI-GeneID:
130205036
NCBI-ProteinID:
XP_056288107
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Position
15:complement(19083152..19093858)
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AA seq
387 aa
AA seq
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MDDDQPKTLYVGNLSRDVTEALILELFGQIGPCKSCKMIVDTAGHDPYCFVEFYEYRHAT
ATIAAMNGRKILGKEVKVNWATTPTSQKKDTSSHFHVFVGDLSPEITTDDIKAAFAPFGK
ISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPAPKTT
NETPNAKQLSFDEVVNQSSPSNCTVYCGGVTTGLTEQIMRQTFSPFGQIMEIRVFPDKGY
SFVRFNSHEAAAHAIVSVNGTSIEGYVVKCYWGKETTDMVSPIQQVQMSQQNTVSFAAQP
YSQWGQWYSNTAAQQIGQYVPNGWQVPSFGVYGQTWDQQGYNHLHAGAGWTGVGAVSNGA
MVEPGQGVNGAVLTNTAGMSTAGYHTH
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atggacgatgaccagcctaaaaccctgtatgtggggaatctgtcccgggacgtgacagag
gccctcatcttggagttgtttggccagattggaccctgcaaaagctgcaaaatgatagta
gatacggcaggtcacgatccgtactgctttgtggagttctatgagtatagacatgccact
gccacaatcgcagccatgaatggtcggaaaatactgggtaaggaggtcaaagtcaactgg
gccacgacgccaaccagccaaaagaaagacacaagtagtcacttccacgtctttgttgga
gatttaagtcctgaaatcacgacggatgacataaaagcagcttttgctccgtttgggaaa
atatcggattgtcgagtggtgaaagacatggccacaggtaaatctaaaggctatggcttt
gtctccttcttcaacaaatgggatgcggagaacgccatccagcagatgggaggccagtgg
ctgggaggacggcagatcaggaccaactgggccaccaggaagcctgccccgaaaactaca
aacgagacacccaacgccaagcagctatcttttgatgaggtggtgaaccagtccagcccc
agcaactgcaccgtctactgcggcggagtcacaacaggtctcacagagcaaatcatgaga
cagaccttctcgcctttcggccaaataatggaaatccgcgttttcccagacaaaggctac
tcgtttgtgaggttcaactcccacgaagccgcagctcacgccatcgtgtccgtcaacggg
acgtccatagagggctacgtggtgaagtgttactggggcaaagagacgacggacatggtt
agccccatccagcaggtacagatgtcacagcagaacacggtgagcttcgcagcgcagccc
tacagtcagtggggtcagtggtacagcaacacggccgcccagcagatcgggcagtatgtg
cccaacggatggcaggtgccgagcttcggggtctacggacagacctgggatcagcagggc
tacaatcatttacacgccggagccggatggacaggcgtgggcgccgtgagcaacggggcc
atggtggagccggggcagggcgtcaacggcgccgtgctcaccaacacggccggcatgagc
accgccggctaccacacccactga
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