Pseudoliparis swirei (Mariana hadal snailfish): 130205049
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Entry
130205049 CDS
T09868
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130205049 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
130205049 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
130205049 (pdlim5b)
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
Zn_ribbon_IS1595
PDZ_2
Motif
Other DBs
NCBI-GeneID:
130205049
NCBI-ProteinID:
XP_056288127
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Position
15:13191595..13223430
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AA seq
610 aa
AA seq
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MSRSYHVSLAGPAPWGFRLQGGKDFCMPLTISRLTDEGKAARAKMSVGDVILSINGISTD
GTNHLEAQNKIKACTGNLSLTLQRPSSAPKDGVPKDEPQEIIKPVPITHPATSTAYTKPS
SQPGAAYNKTARPFGGDSGVITASSPAAPTIPSQSSAFKPAGPSQPPQPPFLLKSSLPAT
DSPPANSVPRPGPARHTFTSPSASSSSSNSSSPARVTAPSSHPNVPQPSVYNTPINLYSN
TNACEAIIGQRRGLLQSQGLSEPFNGKPSVVLEDHASPLSDASKKRLIEDTEDWNSRTGT
SQSRSFRILAQLTGTENEPAPENSGKSLAVDKAPPPALHTSPAAKIFSKSAASPRNGNII
PTSTFKSPVAQSKPSFQPGGPPGFPKGGAAPSFGKVTNLPRAPDRPTPQPHPQDLNCVVQ
RAEHIPAGTRTPMCNKCNNVIRGPFLVAMGMSWHPEEFNCAHCHSSLAENGFVEERGQVY
CEHCYEQFFAPTCARCQQKILGEVMNALKQTWHVSCFVCVGCQQPIRGNTFHMEDGQPYC
EIDYYKMFGSSCHGCDFPIEAGDKFLDALGSTWHDTCFVCAVCSTSLEGQTFFSKKDKPL
CKKHAHTVAI
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaagctaccatgtctccctggctggcccggccccctggggcttcagactgcaa
ggagggaaggatttctgtatgcccctcaccatctcacggctgaccgatgaaggcaaagca
gccagagccaagatgagtgttggagacgtcattctgtccatcaatggcatttccacagat
ggcacaaatcacctcgaggcccagaacaagattaaggcctgcacaggcaatctcagcctc
actctacagagaccctccagtgcccctaaagatggagtacctaaggacgaacctcaagaa
atcattaagcccgtcccaatcactcaccctgccacgagcactgcatacaccaagccgtca
agtcagcccggtgctgcgtacaacaagaccgcccggcctttcgggggggacagcggcgtg
atcacagcttcctccccggctgcccccaccattccctcacagtcctccgctttcaagccc
gctggcccctctcagccaccgcagcctccgtttctgctgaagtcgagccttcccgccacg
gactcccctcccgccaactcggttcccaggcccggccccgctcgccacaccttcacgtcc
ccgtctgcatcttcctcctcatctaactcctcttctccagctcgagtgacagccccctcc
tcccatcctaatgtcccacagccctccgtctataacacaccgatcaacctctactccaac
accaatgcttgcgaggcgatcattgggcagaggcgcggccttttgcaaagccaggggctg
tcggagcccttcaatgggaaacccagtgtggtgctcgaggatcacgcgtccccactgagc
gatgccagtaagaagcgtctgattgaggacacagaggactggaactcgcgaaccggcacc
tcccagtcccgctccttccgtatcctggctcagctcaccggcactgaaaatgagcccgct
ccagagaacagtggaaagagtttggcagttgacaaagccccccctcctgccctgcacacc
tcgcctgcagccaaaatattttccaaatctgcagcatcacccaggaacggcaacatcatc
cccacttccacgttcaagagcccagtggcccagagcaagccttccttccagcccggaggt
ccaccaggtttcccgaagggtggagcagctccttcattcggcaaggtcaccaaccttccc
agagctccagatcggcccaccccgcagccacatccacaggacctcaactgtgtggtgcag
cgggcggagcacatcccagccgggactcgcaccccaatgtgcaacaagtgcaacaatgtc
atcaggggcccgttcctcgtggccatgggcatgtcgtggcaccccgaggaattcaactgt
gctcactgccactcctcgctggcagagaacggcttcgtggaggagagaggccaagtgtac
tgcgagcattgctacgagcagttcttcgctcccacctgcgcccgctgccagcagaagatt
ctgggggaagtcatgaatgccctgaaacagacctggcatgtgtcctgcttcgtctgtgtt
ggctgccaacaaccaatcagaggcaacacatttcacatggaggatggacagccatactgt
gaaatagactactacaagatgttcgggtccagttgccacggctgtgacttccccatcgag
gcaggggacaagttcctggacgctctgggatccacctggcacgatacctgctttgtgtgt
gcggtctgctccactagtctggaaggtcagacgttcttctccaaaaaagacaagccgttg
tgcaagaaacatgcccacactgtcgccatctga
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