Pseudoliparis swirei (Mariana hadal snailfish): 130205059
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Entry
130205059 CDS
T09868
Symbol
pms1
Name
(RefSeq) LOW QUALITY PROTEIN: PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130205059 (pms1)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
130205059 (pms1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
130205059
NCBI-ProteinID:
XP_056288150
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Position
2:complement(5026871..5045287)
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AA seq
874 aa
AA seq
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MKQLPPDTVRLLSSTQVITSPLNVVKELMENSLDAEASSIDIKLENYGLDRIEVRDNGLG
IKAADTPVMAVMHFTSKICSNEDLERLETYGFRGEALGSVCSVAEVAVITKTEEDDVSTQ
YTLSFTGEIVSQKPSHLGRGTTVSVLKLFKNMPVRRQYYSSNKKCKEELKKIQELLVAYA
IIKPGLRLTLIHNKVVIWQKATAADHRSALLATLGAVVVANLLPCHHHQEQPEILLEGFF
PKPGADYSSTSSSGTDKTFIFVNNRPVHQKDVMKLLRQHYTAQYPNDPIRNRYPTAMLKI
TVPPSSVDVNLTPDKTQVLLHDKEAVLTALDALLVSLYGYRHDGGDPPAEKRETSPSSQS
AERVNGLGNLRDRFLNEAPEHGAAARATSAAASLDRRLSNGSSSSSVAEDWVVDRFPAGL
ETDVSLCDDETAQSKDRISAEXWSRGTALTDPVSGEPLRPVEIHRPSKHSRSDSDEIESR
SVSDKKAFNAITEKRAALTAYDLISNRAMRAPLSPAGLFEKEARAEVLREKPTAGLQEIS
DTVHQRWKNLREEERKKYEEKAKKHLEHHDQRTKLASAEGPGETSFSTPRGQKRKAPLSN
QQLLDQLFSAQPQKKTRNPAAPPKPSRLLPCSVAALRLRLRRLSSQSAEAPRGLRLVNRL
ASPGAWVILRGQKLMLLNPFRVEEALLFKRLLENNILPAVSLQNPIQLTDGSLGGAAYTE
ALCDMEKQSPELSGGVLFSDPRLVANGFKIKLTPGLTSAERHLEVTAMADCVPFLGVDDL
GEILTAVLHRKARAVHECRPLKVTNYLQGEAVRLARQLPTNLSREDVEETLLRMDRQLAE
NNRTCIHGRPFLQHLSDVPSTDQEAKALLRPLEL
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagctgcctccggacacagtccggctgttgtccagcacccaagtcatcacctct
ccgttgaacgttgtgaaagaactgatggaaaattccctggacgccgaagcttcgagcatc
gacattaaactggagaactacggtttggaccggatagaagtgcgcgataacggccttgga
atcaaagccgccgacactcccgtgatggccgtgatgcacttcacctcgaagatctgtagc
aacgaggacctggagcgcctggagacgtacggcttcagaggggaggcgctgggctccgtc
tgctccgttgccgaggtggctgtcatcacgaagacggaggaggatgacgtcagcacccag
tacacgcttagcttcacgggggagatcgtgtcccagaagccgtctcacttgggtcgaggc
acaaccgtgagcgtactgaagctgttcaagaacatgccggtgagacgtcaatactactcc
tcgaacaagaagtgcaaggaggagctgaagaaaatccaggagctgctggtggcctacgcc
attataaaaccgggcttgaggctcacgctcattcacaataaggtggtgatctggcagaag
gccacggcggccgaccacagaagtgccctcctggctacgctgggagccgtcgtcgtcgcc
aacctgctcccatgccaccatcaccaagagcaaccggagattcttttagaaggctttttt
cccaaacccggagcggattactcctctacgagctcttccggcactgacaagacattcata
ttcgtcaacaaccggcctgtccaccaaaaagatgtaatgaagttgctacgtcaacactac
accgctcagtatccgaatgacccgatccggaaccgctatcccaccgccatgcttaaaatc
acggttccaccgtcgtcagtcgacgtcaatctgacacctgacaagacccaggttcttctt
cacgacaaggaagctgtgctgaccgcattagatgcattactggtttctctctacggctat
cggcacgatggtggtgaccccccagctgagaagcgtgagacgtccccctcgtcccaaagc
gcagagagggtcaacggtctgggtaacctgcgcgatcgcttcctcaacgaggcgcccgaa
cacggcgccgcggctcgagcaacgagcgccgccgcttcgctggaccgccggctctccaac
ggcagctcctcgtcctccgtggcggaggactgggtggtcgaccggttccccgccgggctc
gagaccgacgtctctctctgcgacgatgagacggctcaaagcaaggaccggatatcggcc
gaangctggagccgggggacggctctgaccgaccccgtgtcgggagaacccctgcggccc
gtcgagatccaccggccctccaagcacagccgttccgactccgacgagatcgagagtcgg
agcgtctccgacaaaaaggcgttcaacgccatcacggagaagcgggctgctctgacggcc
tacgacctgatcagcaaccgcgccatgagggcgccgctatctcccgccggcctgttcgag
aaggaggccagagccgaggtccttcgggagaaacctacagccggcctgcaggagatcagc
gacaccgtgcaccagaggtggaaaaatctgagggaggaagaacgtaagaagtacgaggag
aaggctaaaaaacacctggaacaccacgaccagaggaccaagttggcttcggctgagggc
cccggggagacgagcttcagcaccccgaggggccagaaacgcaaagcgccgctgtccaac
cagcagctgctggaccagctcttctcagcacagccccaaaagaagacgaggaaccccgcg
gcgccgccaaagccctcgcggctcctcccctgcagcgtcgccgccctccggctgcggctg
cggcgcctctcgtcccaaagcgccgaggcgccgcggggcctccgtcttgtaaaccggctg
gcctctccgggcgcctgggtcattttacgcggtcagaagcttatgttgttaaacccgttt
cgagtggaggaggccttgctgtttaagagactcctggagaataatatacttccagcagtg
agtctccagaaccctatccagttaacagatgggagtctggggggggctgcatacacagag
gctttgtgcgacatggagaaacaaagccccgagctgagcggaggggtcctcttctccgac
cccaggctcgtggctaacggctttaaaatcaaactcactccaggcctcacgtcggccgag
agacatctggaagtgacggcgatggcagactgcgtgcctttcctcggcgtggacgacctc
ggggagatcctgacagccgtgcttcacaggaaggcccgggccgtgcacgagtgccggcca
cttaaagtcacaaactacctgcaaggggaagcagtacgactcgcccgtcagttacctaca
aatctatccagggaagacgtggaggaaactcttctccggatggatcggcagctcgctgag
aacaaccgaacctgcatccacggacgacctttcctccagcacctgtctgacgtcccgtct
acggaccaggaagcgaaagctctgctgaggcctctagagctgtga
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