Pseudoliparis swirei (Mariana hadal snailfish): 130205178
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Entry
130205178 CDS
T09868
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130205178 (vldlr)
Membrane trafficking [BR:
pswi04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
130205178 (vldlr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
EGF_3
EGF
Motif
Other DBs
NCBI-GeneID:
130205178
NCBI-ProteinID:
XP_056288347
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Position
15:7529872..7569716
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AA seq
843 aa
AA seq
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MVSSAPGLLLLPMLIYLQHCIQVNGTKTECEASQFQCGNGRCIPSVWQCDGDEDCTDGSD
ENSCVRKTCVEMDFVCRNGQCVPKRWHCDGEPDCEDGSDESVEICHMRTCRVNEFSCGAG
STQCIPNFWKCDGEKDCDNGEDEVNCGNITCAPNEFTCASGRCISRNFVCNGEDDCGDGS
DEVECAPSSCGPSEFPCGNSSCIPASWVCDDDVDCQDQSDESPSRCGHHPTPPAKCSSSE
MQCRSGECIHKKWRCDGDPDCKDSSDEANCPVRTCGSDQFKCDDGNCILGSKQCNGLRDC
ADGTDEVGCKNMTQCIGPEKFKCRSGECIEMSKVCNKARDCPDWSDEPIKECNLNECLLN
NGGCSHICKDMVISFECDCTPGLQLIDYKTCGDVNECLNPGICSQICINLKGGYKCECHN
GYQMDPTTGVCKAVGEEPCLIFTNRRDIRRLGLERKEYTQIVAQQRNTVALDADFNRHMI
FWADLGQKAVYSTVLDKQDVGIHKKVIDNVQTPVGIAVDWIYKNLYWSDLGSKTISVANF
NGTKQKVLFNKGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVATDIQWP
KGITLDLIKGRLYWVDSKLHMLCSVDLNGDNRKKVLQSSEYLAHPFALTVFEDRVFWTDG
ENKAIYGANKFTGSDVVTLASNLNDPQDIIVYHELIQMSGTNWCVEKGENGGCSYMCLPA
PQINKHSPRYTCVCPEGQELAADGHRCKPEVNVSTSIQVNSTARGSTAAWAILPVLLLVM
AVGGGYLMWRNWQLKNQKSMNFDNPVYLKTTEEDLNIDITRHGANVGHTYPAISIVSTED
DLS
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggtttcgtccgctccggggctccttctgctcccaatgctaatatatctccagcactgc
attcaagtaaacggtacgaagactgaatgtgaggccagccagtttcagtgtggaaacggg
cgctgcatcccgtctgtctggcagtgtgacggagatgaggactgcaccgatggcagtgac
gagaactcctgtgttagaaagacttgtgtggagatggactttgtatgtcgcaacggccaa
tgtgtcccgaaacgatggcactgtgatggggagccagactgcgaggatgggtcagacgag
agcgtagaaatctgccacatgaggacgtgtcgtgtgaacgagtttagctgcggagcgggc
tccactcagtgtatccccaacttctggaaatgtgatggcgagaaggactgtgacaacgga
gaggacgaggtcaactgtggcaatatcacttgtgctccaaatgagttcacgtgcgccagc
ggccgttgcatctcccgcaactttgtgtgtaacggcgaggacgactgtggtgacggctct
gatgaggtggagtgtgcgccgtcctcatgtggtcctagtgagttcccgtgtggaaactca
tcgtgcatcccggccagctgggtgtgtgatgatgacgttgactgccaggatcagtcagat
gagtccccgtctcgttgcggccatcatccgacaccaccagccaagtgttcatccagtgag
atgcagtgccgctcaggagagtgtattcacaagaagtggaggtgtgatggagaccctgac
tgcaaggacagcagcgacgaagccaactgtcctgtacgcacttgtggatcagatcagttc
aaatgtgatgacggcaactgtatcctgggcagcaagcagtgtaacggcctcagagactgc
gccgatggaacggacgaagtcggctgtaaaaacatgacccagtgtatcggaccagagaag
ttcaagtgtcgcagcggggagtgtatcgagatgagcaaagtgtgcaacaaggcccgagac
tgtcctgactggagcgacgaacccatcaaggaatgcaatctgaacgagtgtctcctgaac
aatggtggctgctctcacatctgcaaagacatggtgatcagctttgagtgtgactgcaca
cctggacttcagctcatagactacaagacctgtggagatgttaatgagtgtctgaatccc
ggcatctgcagtcagatatgcatcaacctgaagggtggatacaagtgcgaatgccacaac
ggctaccagatggatccgaccaccggagtctgcaaagcagtcggtgaggagccctgcctg
attttcaccaaccgacgtgacatacgtcgtctgggtctggagaggaaggagtacactcag
attgtggcgcagcagaggaacacggtggctctggatgcagactttaatcggcatatgatc
ttctgggctgacctgggccagaaggccgtgtatagcactgtgctggacaaacaagatgtc
ggcatccacaagaaagtgatcgacaacgtccagactcctgttggaatcgccgtggactgg
atctataaaaacttgtactggtctgatctcggcagcaaaaccatttctgtagccaatttc
aacggaaccaagcagaaagttctgtttaacaaaggcctcaaagaaccggcatccatcgct
gtggatccgctgtctgggtttctgtactggtccgactggggcgaaccggccaagattgaa
aaatctggtatgaacggagtggacagacaggttttggtggcgacagacatccagtggcct
aaaggaatcaccctggatctgatcaaaggcaggttgtactgggttgactcgaagcttcac
atgctctgcagcgtcgacctgaacggagacaacaggaagaaagtactccagtcttcggaa
tacctggctcatcccttcgctctcactgtgtttgaggatcgcgtcttctggacagatggc
gaaaataaagccatctacggtgcgaacaagttcacaggctccgatgtggtgacgctggcc
agcaacctgaatgacccccaggacatcatcgtataccacgagctgatccagatgtctggc
actaactggtgtgtagagaaaggtgaaaatggaggctgtagctacatgtgcctgcctgcg
ccgcaaatcaacaaacactctcccagatacacctgtgtgtgtccagagggacaggagctg
gctgctgacggccatcgctgcaaacctgaggtaaacgtgagcacgtcgatccaggtgaac
tccacagccagagggtctactgctgcctgggccatactacctgtcttgctgctggtgatg
gcagtggggggcggctacctgatgtggcgaaactggcagctaaagaaccagaagagcatg
aactttgacaaccccgtctacctgaagaccacagaagaagaccttaacatcgacatcacc
cggcacggcgccaatgtagggcacacctatcctgcgatttcgattgtgagcacagaagac
gatttatcatga
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