Pseudoliparis swirei (Mariana hadal snailfish): 130205193
Help
Entry
130205193 CDS
T09868
Symbol
tnca
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
pswi04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130205193 (tnca)
04518 Integrin signaling
130205193 (tnca)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130205193 (tnca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130205193 (tnca)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130205193 (tnca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
Fn3_Dep-1_3rd
Pur_ac_phosph_N
Fn3_VIN3
DUF7949
NDNF_C
DUF4998
Motif
Other DBs
NCBI-GeneID:
130205193
NCBI-ProteinID:
XP_056288372
LinkDB
All DBs
Position
15:complement(18879497..18913553)
Genome browser
AA seq
2364 aa
AA seq
DB search
MGTRGVLGCLLLTALLSLSNAGLVKKILRHRRQTLEPPEELNITLPSAHRPVVFNHIYNI
NVPASSLCSVDLDAPESTQLGSTEATASSGEHFTEHTVDGENQIVFTHRINVPRQACGCA
KDLMGLKDLTGLKELMSRIEMLEGEVSLLRDQCNGDRACCGTQVTGVVGTKPYCHGHGNY
SAETCGCVCEPGWKGPNCTEPECPGNCQNRGRCVDGTCECFKDFAGADCTLEICPVDCGA
HGQCVGGVCICSDGFLGDDCSRTECLNNCRGRCEDGDCVCDEPWTGSDCSELNCPKDCND
RGRCQNGTCYCHEGYAGKDCGERTCANNCHGNGFCVNGQCDCAAGFSGDDCSRVTCLNDC
NGRGTCFNGMCICDVGYQGADCSQLACLNNCNRRGQCVNGQCACNVGFQGDDCAKLSCPN
NCRQRGRCVNGQCVCEEGFAGEDCSIRTCPSNCYGRGKCIEGRCVCQEGFTSEDCGEVSC
PRNCRNRGQCVDGQCVCNEGFSGEDCGQRACPNDCLTRGDCVDGKCVCGEGYSGHDCSVH
ACPGNCNNRGRCVGGRCTCASGYEGEGCAELSCLNNCRDNGRCLDGLCVCEEGYIGEDCS
EVSPPMDLSVGEVTSDTVDLSWDNEMLVTEYLVTYVPTSPGGLQMEFTVAGDKAAATVKE
LEPGIEYLINVYAVLSNKKSIPVSARVATELPKPDGVIFKSLKETSVEVMWDQLDISFDG
WEIYFRNTKEENGKVVTTLPPTQTHFLQSGLGPGQEYEVSINIIKNNTRGPQTSKKVTTK
IKGPRQVEVKDVTDSSALVGWSQPAAPTDRLTMLYWSTSDPSEETRVEMSPQVKQHSIDG
LRPDTEYTVSLVSRRGKLHSDPSNTTFTTAMDAPVDLQAVTQTDDSITLEWTNTQADVGE
YLVKYSPLSGSTHGEELVPRGPGDTTKATITGLKPGMEYGIGVTAVKKERESNPATTNAA
TDIDPPRDLKETQSTENTLTLRWRKPRAKVAAYRLVYVSGDGQVGEAEIPPAATSYVVSN
LMPGTSYTITLAAERGLKRSTPVTVSASTASFTFYLADTDDRELTTPPGSEDNVISFAYL
EPSDFPSSVGTEDEDEELTVSGVTPHGFDLTWKLKAHGAYDSLTVGYKDARRLWDAREAR
LPGDATGSRIQGLNASTEYQIELYGITGSQRSALLEAVAVTAPQPTSPGVLMLSIRDAPT
TAVETAAAQSPDPLRPLSTPDDGTMSSGAEPEGSSPDVPGDLEVHVTSTSFLVELGAHVT
IIPGSVRNTEIEGVSPSTLYDITLQGLLEGERSLPLKVVATTVEPKPMVHLTASDITWDG
FTASWSPTSGEFDSFVIEVTNLENLKESQNLSLSGDAFSLGISGLNPNTSYMVGLFGMYR
GSFLEPVYTQATTVNQPVVGKLYISNLTSESFSISWNGTEGEFDGFILEIIDSDWLMEPK
EYNVSRSVASHDVTGLRPSTDYIAYLYGTFKGSRTSAISIVASTAEEPDLSRLVVSNVTS
DRLYLSWRTGEKAFDVFIVEVRESALPSQAMGRTLAGDVRSAVMAGLKARTSYDIKLYAS
AGGQNTQPLFDVATTEDVPQLGPIAASSVSPHNLSLSWSAVSGHFDGFVVRVSDPEQQSD
TLEFKLPGEVRNFTVSNLMDATGYDIELYGISHGRHTPSVLAHAVTAPLPKVENLTISNL
TPYGFRVSWEVKQQQQQQQQQKEEEEEEEEELAPSSGGFTHFQIVVTDSGWLLEPQEFTL
PGNQSHLDIWGLITGIGYEVRLTGVSESGLLSRPLTTVAVTEAEPEVEHLFVSDVTADGF
RLSWAADDDLFDRYVIKIRDGKKFAHPREYSASGAERTKVLTGLMSGTEYEIELYGVTLD
ERSQPITGVAQTGLSTPRGLSFSEVTDSSAVVHWSMPRSPVDNYRIAYVPFEGGSPLVVT
VGGDVFETVLPDMIPGKMYQVSVSGVKGLEESDPSTDTVITALDRPQGLTAANVTDASAL
LVWQPSVATVDGYVITYSADSVSHVVERVSGNTVEFEMNSLVPGAHYTVGVHSLKEAQKS
DSAVTEFTTDVDPPRDLMAVNIQTDSATLTWKPPQAAVTGYTLTFSADGAIREVVLSPTA
SSYSMAALTGSTEYDVTLQAIAGTQRSRHVTTVFTTIGQLYRRPRDCAQIFLNGEASSGL
YAAYVNGEERPPIQVYCDMTTDGGGWMVFLRRQNGKLEFFRNWRNYTGGFGNMKDEFWLG
LSNLHKITNSGHYELRVDLRDGGESAYAQYDKLTIAEPKKRYKIYVGAYSGTAGDSMTYH
QGRPFSTFDNDNDIAVTNCALSYKGAFWYKNCHRVNLMGKYGDGSHSKGINWFHWKGHEH
SIEFAEMKIRPANFRHFESRKKRS
NT seq
7095 nt
NT seq
+upstream
nt +downstream
nt
atgggtacacgaggcgttctaggctgcctcctcctgaccgctttgctcagcttatctaac
gccgggctcgtgaagaaaatcctacggcatcgccgacagactctggaaccccctgaagaa
cttaacatcacgctgccgagtgcgcaccgtcctgtggttttcaaccacatctacaacatc
aacgttcccgccagttccctgtgctctgtggatctggacgctccggagagcacgcagctc
gggtctacagaggccacggcctcttcgggcgagcacttcaccgagcacacggtcgacggg
gagaaccaaattgtcttcacccaccgcatcaacgtacctcggcaggcctgtggttgcgcc
aaagacctgatgggcctgaaagacctgacgggcctgaaagaactcatgagccgaattgaa
atgctggagggagaggtttccttactgagggatcagtgcaacggtgacagggcctgctgc
ggcacacaggtcacgggtgtggtgggaactaaaccttactgccacggccatggaaactac
agcgctgaaacctgtggctgcgtatgtgagccgggctggaaaggacccaactgcactgaa
cccgagtgtcccggtaactgccagaaccgaggccggtgcgtcgacggaacgtgcgagtgc
tttaaggacttcgccggagcggactgcacactcgagatctgccctgtggactgcggagca
catggccagtgtgtcggaggtgtttgcatctgctcggatggtttccttggcgacgactgc
tcgcgaaccgagtgtctcaacaactgccgcggccgctgtgaagacggagactgcgtgtgt
gacgaaccctggaccggctccgactgctctgagctcaactgccccaaagactgcaacgac
cgcgggcgctgccagaacggcacctgctattgccatgaggggtacgccgggaaggactgc
ggcgaacgcacctgcgccaacaactgccacggcaacggtttctgcgtaaacggccagtgc
gactgcgccgccggcttcagcggagacgactgctctcgggtcacctgcctgaacgactgt
aacggcagaggtacctgcttcaacgggatgtgcatctgcgacgtcggctaccaaggcgca
gactgcagccagttggcgtgcctgaacaactgcaaccgcagaggccagtgcgtaaacggg
cagtgtgcctgcaatgtcggcttccagggagacgactgcgccaagctttcctgcccaaac
aactgccgccaaagggggcgctgcgtcaacggccagtgcgtgtgcgaggagggcttcgcc
ggagaggactgcagcatcaggacctgcccctcgaactgctacggacgcggcaagtgtatt
gagggtcgctgtgtgtgtcaagagggattcaccagcgaggactgcggtgaggtgagctgc
cccagaaactgtcgaaatcgcggccaatgcgtggacgggcagtgcgtctgcaacgagggc
ttctccggagaggactgcggtcagagagcttgtcccaacgactgcctgacccgaggcgat
tgcgtggacggcaagtgcgtctgcggggaaggctactcgggccacgactgctcggtgcac
gcctgtccgggtaactgcaacaacagggggcgctgcgtcggcggacggtgcacgtgtgcg
agcggttacgaaggagagggctgcgcggagctgagctgcctcaacaactgccgggacaat
ggccgctgcctggacggtctgtgcgtctgcgaggagggatacatcggagaagactgctcg
gaagtgtctcctccaatggacctatctgttggcgaggtcacctctgacacggtggacctg
tcctgggacaacgagatgctggtgaccgagtacctcgtgacgtacgtgcccaccagtccc
ggcggtcttcagatggagttcactgtggcgggagacaaagcggcggccaccgtcaaagag
ctcgaacccggcatcgagtacctgatcaacgtctacgccgttctgagcaacaagaagagc
atccccgtcagcgcgagggtggccacggagcttccaaaaccagatggtgtaatattcaaa
tcgttaaaagagacctcagtggaggtgatgtgggaccagctggacatctccttcgatggc
tgggagatctatttccgtaacacgaaagaagaaaacgggaaagtggtgaccaccctccca
cctactcaaacccactttctccagtcaggcctgggaccgggacaggagtacgaggtctct
attaacatcatcaagaacaacaccagaggtccccaaacatccaaaaaagtcacgaccaag
atcaaaggcccccggcaggtggaggtgaaggacgtgacggactcctccgccctggtgggc
tggtctcagccggcggctcccacggacagactcaccatgttgtactggtccacctcggac
ccctcggaggaaaccagggtggagatgtccccccaggtcaagcagcacagcatcgacggc
ctgaggcccgacaccgagtacacggtgtcgctcgtctccaggagaggaaagctccacagt
gacccttccaacaccacattcactacagccatggacgcccccgtggacctgcaggctgtg
acccagactgacgacagcatcactctggagtggaccaacactcaagctgacgtcggcgaa
tacctggtgaaatacagtcccctctctgggtcgactcacggtgaagaactggtcccacga
ggacctggagacaccaccaaagccaccatcactgggctgaagccggggatggagtacggg
attggtgtgaccgccgtgaagaaggagagggagagcaaccccgccactaccaacgctgca
accgatatcgatcctcccagagacctgaaggaaacgcagtccacagagaacaccctcacc
ttgaggtggcggaaaccccgggccaaggtcgccgcctaccggctggtgtacgtctccggg
gacggccaggtcggggaggcggagatcccgcccgcggcgacgagctacgtcgtgtccaac
ctgatgcccggaacgagctacaccatcactctggctgcagagaggggcctcaagaggagc
acgcccgtcaccgtgtctgcatccacagcctctttcacattttatttagctgacacagac
gaccgtgagctcacgactcctccgggctcggaggacaatgtcattagctttgcgtattta
gagccctccgactttccgtcctcagtgggaacggaggatgaggatgaggagctgacggtc
tcgggcgtcacgccccacggatttgacctcacgtggaaactaaaggctcacggcgcctac
gatagtctgacagtaggatataaagacgctcggcgattatgggatgccagagaggcccga
cttcctggagatgccactggctctcgaatccagggcctgaatgcatcgacagaatatcaa
atagaactttatggaattaccggtagccagagatctgcgctactcgaagcggtcgcagtc
acagcgccccagcctacctctccaggtgtgctcatgctgagcatcagagatgccccgacc
actgctgtggagacagcagcggctcaaagtccagatcccctccgtcctctaagcactccc
gatgacggtaccatgagctccggggccgagcccgagggctcgagcccggacgtaccgggg
gacctcgaggtccacgtcacctccaccagctttctggtggagctcggtgctcatgtgacc
ataataccaggaagtgtgagaaacactgaaatagagggtgtgtccccctccacactatat
gatatcacattgcaagggctgttggaaggggagcgatctttacctctcaaagttgttgct
acgacagtagagccgaagcccatggtgcacctcaccgcctctgacattacatgggacggc
ttcactgcgtcctggagccccaccagtggggaatttgacagctttgtcattgaggtcaca
aacttggagaatttgaaggagagccagaacctcagtctgtccggagacgcgttcagcctg
ggcatctccgggctgaaccccaacaccagctacatggttggcctgtttgggatgtaccgg
ggctccttcctggagcccgtgtacacccaagccaccacagtgaatcaaccagtggttggc
aaactatatatctcaaacttaacgtcagagagcttttcaatctcctggaacggcactgaa
ggagaatttgatggttttatcctggagataattgattccgattggctgatggagccaaag
gaatataacgtatcccgcagtgtggcgtcccacgacgtaacggggctcaggcccagcact
gactatatagcctacctctatgggacattcaagggatcccgaacaagcgctatcagtatt
gttgcatcaacagccgaagagcctgatttgtccaggctagttgtttctaacgttacctca
gacagattgtatctgtcgtggcggacaggagagaaggcctttgatgtctttatagtcgaa
gtcagagagtctgctttgccctcgcaggcgatggggcgcactctggcgggagacgtgcgc
tccgcggtcatggccgggctcaaagcgcgcacaagctacgacataaagctgtacgccagc
gccgggggccagaacacacagcccctgtttgatgtagctacaacagaggatgttccccag
ttggggcccatagcggcttcatctgtgagcccacataacctcagcttgtcctggagcgcc
gtgtcgggccactttgatggctttgttgtccgggtcagtgaccccgagcagcagtctgac
acgctggagttcaaactgcccggtgaagtgcgtaactttaccgtctctaacctgatggat
gccacaggctacgatattgaactgtacggtatttctcacggccgccacactccctctgtg
ttggcccacgccgtcacagctcctttgcctaaagtggaaaacttgaccatttccaacctc
accccctacggcttccgtgtgtcgtgggaggtgaagcagcagcagcagcagcagcagcag
cagaaggaggaggaggaggaggaggaggaggagttagcgccctctagtggcggcttcaca
cattttcaaatagtggtgactgactctggctggctgctggagcctcaggagttcactctg
ccaggaaaccaaagtcacctggacatctggggcctcatcaccggcataggctatgaggtc
aggctgaccggggtgtcagagtcggggcttctctctcggcctctgacgacagtggctgtg
acagaggccgagccagaggtggagcatctcttcgtctcggacgtcacggccgacggtttc
cgtctgtcgtgggcggccgacgacgacttgttcgaccgatacgtgatcaagataagagac
ggcaaaaagttcgctcaccctcgagagtacagcgcgagcggcgccgagcgaaccaaggtg
ttgaccggcctcatgagcggcaccgagtacgaaatcgagctttacggcgtcacgttggac
gaacgctcccaacccattactggggttgctcagacaggcctgagcactccaagaggactc
agcttctccgaggtgacggactcctcggcggtggttcactggtccatgccgcgctctccg
gtggataactaccgcatcgcctacgttccctttgaaggaggaagccccctggtggtgact
gtgggcggcgacgtgttcgagaccgtgctgcccgacatgatcccgggcaaaatgtaccaa
gtgtctgtgagtggtgtgaagggtcttgaggaaagtgaccccagcactgacactgtaatc
acagctttggacagacctcagggtctaactgcagcgaatgtcaccgacgcctcggccctg
ttggtgtggcagccgtctgtggccactgtcgatggctacgtcattacgtacagcgcggat
tcagtgtcccatgtggtggagcgtgtttctgggaacacggtggagtttgagatgaactcc
ttggttccaggagctcactacacagttggagtacactctctgaaggaagctcagaagagt
gactctgctgttactgaattcaccaccgatgtggatcctcctcgtgatctgatggctgta
aacattcaaactgacagtgcgactctcacgtggaaacctccgcaggcggctgtgactggt
tacacactcaccttctcagctgacggtgctatcagggaagtggtgctcagcccgacggcg
tcctcttacagcatggctgctctgacgggctccacagagtacgacgtgacgcttcaggcc
atcgccgggacccagaggagtcgtcacgtgactaccgtcttcacgaccatcgggcagctg
taccgacgccctcgggactgcgctcagatcttcctgaacggagaggcgagctccggcctg
tacgccgcgtacgtgaacggcgaggagcggccgcccatccaggtgtactgcgacatgacc
acggacggcggggggtggatggttttcctcagacgccagaatggaaagttggaattcttc
aggaattggaggaactacaccggtggcttcgggaacatgaaggatgagttctggctgggt
ctctccaacctccataaaatcacaaattctggccactacgagctgcgagtggacttgagg
gatggcggggaatcggcctacgctcagtacgacaagctcaccatcgcagagccgaagaag
cgctataagatctacgtcggggcgtacagtgggacagcaggcgactccatgacgtaccac
cagggtcggcccttctccaccttcgacaacgataacgacatcgccgtcaccaactgcgcc
ttgtcgtacaaaggcgccttctggtataaaaactgtcatcgtgtcaacctcatggggaaa
tatggtgacggcagtcacagtaaggggatcaactggttccactggaagggccacgaacac
tcaattgaatttgcagagatgaagattaggccggccaacttcagacattttgagagcaga
aaaaagcgatcgtag
DBGET
integrated database retrieval system
