Pseudoliparis swirei (Mariana hadal snailfish): 130205287
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Entry
130205287 CDS
T09868
Name
(RefSeq) chondroitin sulfate proteoglycan 4-like
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pswi00535
]
130205287
04091 Lectins [BR:
pswi04091
]
130205287
Proteoglycans [BR:
pswi00535
]
Cell surface proteoglycans
Others
130205287
Lectins [BR:
pswi04091
]
C-Type lectins
Others
130205287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
TMEM154
Motif
Other DBs
NCBI-GeneID:
130205287
NCBI-ProteinID:
XP_056288521
LinkDB
All DBs
Position
15:complement(9187887..9207143)
Genome browser
AA seq
2538 aa
AA seq
DB search
MGSLVAHLFLLLLISTGHVYGVSFYGDGYIHLRTVEASIQTLLHVRFRTSSPASMLFLAA
GRRDFLLLELLSGRLQVRLDLGSGERSLQSEMGIHLGDLAWHTVELTHDHHNVNMTVDRN
SHTSLRMPGPDLELSVEDGLFVGGTAGLKHPFLLNISAGFRGCVDEVVFNEHNLLSSLRP
YSGYTSVHEVSLGCSPQFSATDVDSVSFFSSKSFIFLPPWERPQEGVFECEMYPSAREED
GMVLYSSGHQGGFVAIEIRDGNMVATIGNGESSKAELRSRTHVHSNHTWYPIRLHLLPNS
IQLKVGEELVQATLSLELQDIQLNGPLFLGGLDEEARGEARRAGLLSAVPGGEPAGRGGS
FKGCLREIRVNTQRTGLPHATITKDITVGCKTAQVPDAASTTSPTDHPEFDVITKQPIAN
NKKNSNFLLLRKLEVLEGGRAALEPKHMRVNLDFRKLGIHPSRLMFRIEGQPVHGQLRLD
LSLDTDGILGEGQERTITIGEIDRTFSMLDLWQGRVIYIHSGSEDQKDFFMFSVFSINKK
ALPVFQKGKRLHRFDISVSPVNDAPVLSLPEGNLFTLLEKSKRQLTTDVLRVWDPDSSRA
ELVFSSLGDLNTEVGHLEHQEYPGRAINLFSLNDLEEGKIFFVHTGVPTSRLALRVSDGL
KLSNTVVLRIMALSLEHKLVNNTGLEVNQGEASIITTTHLAVQVNLNHQAVEIRYDVTEP
PQYGELQRLHSSGDWKAATSFSQKLLEKERIRYLSTYRGIQTQKSNITDYFKCNISIGSR
ATEEVVFPVTVRWILFKVTRSKMEVNGVQSAAVTPKDLHVISKGVKVNESNLHFRLLTVP
KKGQLFLDNSALQRNSTFSQNDVTDGLMEYELLNTPQHDTRDTFSFQVFSTHADSTAYDF
RINIKAESTAITVVNKGLSILEGGSRVINKDILFTHTASNQEVHYSITVSPKHGQLRRIN
LSNSTSMNDNIVTFTNQDITAERIVYVHDDSESKQDSFAFQMMVYKANKRTSKKDDGNSA
EHTFNISVQLVNDERPVRVVDKVFHVARDGQRLVTLRDLRYRDDDSDFEDNWLVYTRRGI
PMGELVLSSDTSHKLYEFTQRDLEQNKVLFVHRGVSFGRFVLFVSDGKHYVSTMLEVRAQ
DPYLQVENNTGLMVQRGGLITLTSANLSIFSNLDIRDPQEVTFEVFRPPKHGILCFNDGD
CVTAAGAVSIFTQRDLVAGRLEYRHDGSRELSDGFNVTAKRRETHLDFGVMIKIRLESHQ
RPPTVISNHPVVVAEGQYVSISKEHLEVVHDDSQPSQIVFTVQSPPTLGFLQRFTSNDTH
QINNGEQLPLNETQPPGVTEQPTHSFTQEDLNQGWIIYHQQAAGRTNDSVLLEATNGVTR
VGPIRLEIDIIPILLPLQVSDLTLDEGSSLPLTTDIIKVANHHFSGMNFLYQVIVPPQHG
YLEHSRIPGMPISAFTHTEVEREYISYIHDGSDTLKDNFTIVANQTEIRKHSLPCTAHIN
VTPVNDETPVVSTNKGLKVWVDSVTEITTDDLSAEDSDTPQPEGLEFIVTPPSNGHLALK
GAPSRQILNFTQNHIQTGQLMFMHSGALSGGFHFQVNDGVNFAPRQIFRTTAHSLVLTLQ
RNHPMEVYPGSVTPISEQELQAVTNDVSDMRRNHSVVFAVTDPPKLGSLVQRMPDNSTRN
IVTFTQRMVKDGVILYDQNKPQSVGWSAADAFSFTVSSPPAFLPPHTFTILISDQANAHP
DSPQHKTRLLSNAGAVVAEGGRVTIDRSKLDASNLLGKVPEPHRKDHHILYRLISPPRHG
VLSIHGQNVTRNQPDFSQVTLNKFGVTYVHDDSETTSDSFTFRAWVAPLDLFSSSSSALS
SSSSSSSSSPLYSASSSTLSALDVGSQRRATDSLEVTETFNITVTPVNDQPPLIRSRAPS
MKVVVGESVVLGPDNLQVEDHDTPPEELHYLVFSKPNNGYLTLGERLEPVTSFTQYDVNH
GRLHFIQQGEPSTGVFHFNVTDGHHRPLYKMFSLEVIKPSVSMVNNTGLSLVQGKTAVVL
TTNQFAAQTNSRRQVNITYSVTAHPRHGRIAINDQEVTTFRHEDLQSGRVVYHMTDLSES
EDSFQVSVSASSPGVDFGNVTAQMVNVTVRPLIYLREQVRVPSGIAVKLGKAMIDASELA
RISRADPVFQVLSPPKHGKLVKMTSDPNRASEVLKSFTFSDVVQGRVAIEETLSDSDSKS
ALASAGGHAPATPLNDSFIFMLRAGNVQPAKGELHFTIYPHHQMHRGPSSSNTDGTSREQ
TTTQLPTQNKTTGRGGGRGGSTAVSGDRVGLPPHILSHKNQNRTQHKLRPHSRWGNHTRS
GSHGGRSGGRAEGMGRGPQPHTPSDSDKYAPAIPPDIQPVHVEILPRPASDPLLIILPLL
ACLFLIIILVVLILGFRRRKEKQARLRLLQQLAAVTIPPGGSPYLGRAERSVAMPSVVVT
PLGPTSCPSSPRIPLNPRRRSLAPGVTFWGPFEADGAGGDGKIRGGKIIEKDMVNAGFQT
ALRSRSSTPTLKGNQYWV
NT seq
7617 nt
NT seq
+upstream
nt +downstream
nt
atggggagtcttgttgctcatctgtttctgctcctgctgatctccacgggacacgtctat
ggagtgtcattctatggggatggatacatccacttgcggacagtggaggcgtccattcag
acgttgctccatgtgcgttttcgaacctccagtccggcgagcatgctgtttctggcagcc
ggacgccgagacttcctgctgctggagctcctctctgggcgcctgcaggtccgtttggac
ctgggctcaggtgagcgttcactacagtcagaaatgggcatccatcttggcgacctggcg
tggcacaccgtggagctgacccacgaccaccacaacgtcaacatgaccgtggaccggaac
tctcataccagccttcgtatgccaggaccagatctggagctcagtgtggaggacggactt
ttcgttggcgggaccgccggactgaagcacccattccttctcaacatctctgctgggttt
cgaggctgtgtagatgaagtagtgttcaatgagcacaacctgttgtctagcctaaggcct
tattctgggtacacgagcgtccacgaggtctctctcggctgcagtccacagttttcggca
acagacgtagattctgttagctttttcagctctaaatcttttatctttctcccgccgtgg
gaaaggccacaagagggagtgtttgaatgtgaaatgtacccttctgcgagagaagaagat
ggcatggtgctgtatagctctggccaccaggggggatttgttgccatcgagatcagagat
ggtaacatggtggcaacgataggaaatggagaaagcagtaaggctgagctgcgttctcga
acgcatgttcacagcaaccacacatggtaccccatccggctgcacctgctgcccaacagc
atccagctgaaggtgggtgaggagttggttcaggccaccctgagtctggagctccaggac
atccagctcaatgggcctctcttcctgggagggctagatgaagaagcacggggagaggca
aggcgcgctgggttgttgtccgctgtccctgggggtgaaccggcgggccgaggagggtcc
tttaaagggtgcctccgagaaattagggtgaacactcaaagaacaggccttcctcatgcc
accatcaccaaggacatcactgtaggctgtaagacggcgcaagttccagatgcggcgtcc
accaccagcccaacagatcatcccgagtttgatgtcatcaccaaacaaccaattgccaac
aataagaagaacagtaactttctgttgctgagaaagctagaagttttggagggaggccgg
gcagcactggagcccaaacacatgagggtgaatctggattttcggaaattgggcattcat
ccatctcgattgatgttccgcattgaggggcagcctgtccacggccagctccggctggac
ctcagtctcgacactgatgggattctgggcgaggggcaggagaggactatcacaatagga
gagattgaccgcacgttcagtatgctggacttgtggcagggccgggtgatatacattcac
agtggttcagaggaccagaaggacttcttcatgttttcggtgttctccatcaataagaag
gcgcttcctgtatttcaaaagggtaagcgcctgcatcggtttgatatcagcgtcagtcct
gttaatgatgcgccggtgctcagcctgccggagggaaacctgttcacgttgttggagaag
tccaaacgacagctgacaacggatgtgctgagggtgtgggaccctgacagcagtcgtgca
gagctggtgttcagctccctgggagacctcaacactgaggttggacatcttgagcaccag
gaataccctggcagggccattaacttgttctctctgaatgatctggaggagggtaagatc
ttctttgtccacactggggtccccacctcccggctggcgctcagggtcagcgacgggctg
aagttgagcaacacggtagttttaaggatcatggcgctgtccctcgaacataaactggtg
aataacaccggactggaggtgaaccaaggcgaggcttccatcatcacaaccactcacctt
gcagtgcaagtcaatctgaatcatcaggcggtagaaatccgctatgacgttacagagccg
ccacaatacggtgagctccaacggttgcactcaagtggcgactggaaagcggcaacttcc
ttctctcagaaacttctggaaaaagaacggatccgatacctcagtacctaccgcggcatt
cagactcaaaagagcaacatcactgattacttcaaatgtaacatcagcatcggttcccgg
gccactgaggaggtggttttccccgtcacggtacgctggatcctctttaaggtcacgcga
agcaagatggaggtcaacggtgttcagtctgctgccgtcactcccaaggaccttcatgtg
atctcaaagggtgttaaagtcaatgagagcaacctccacttcaggcttctaacagtgcca
aagaaagggcagctgttccttgacaacagcgctctccaaaggaactcaaccttcagccaa
aacgatgtcacggatggcttgatggagtacgagctgctcaacacgccgcagcatgacaca
agagacaccttcagctttcaggtgttttcaacgcatgccgactcaacagcttacgacttc
agaatcaacatcaaagccgagtcgaccgccatcaccgttgtaaacaagggcctttcgatc
ctggaaggaggaagtagagtcatcaacaaagacatcctgttcactcacacagcaagtaac
caggaggtgcactacagcatcacggtgagccccaagcacgggcagctgaggaggatcaac
ctctccaactcgacttccatgaacgataacattgtgacatttacaaatcaggatatcacc
gcggagaggatcgtgtacgttcacgatgacagcgagagcaagcaggattccttcgctttt
caaatgatggtttacaaagcgaacaaacgcaccagcaagaaggacgacgggaactcggcc
gagcacacctttaacatctctgtgcagctcgtcaacgatgagaggcctgtcagggttgtc
gataaagtttttcacgtagctcgcgatgggcagaggttggtgacgttgcgtgaccttcgt
taccgggacgacgactctgactttgaggacaattggttggtgtacacgcggagggggatt
cccatgggagagctggtgctgtccagtgatacgagtcacaagctgtacgagttcacacag
cgggacctcgagcagaacaaagtgctgtttgtccacagaggtgtgagttttgggcgtttt
gtgcttttcgtatcagatgggaaacattatgtttcaacaatgctggaggtgagggcgcag
gatccttaccttcaggtcgagaacaacacgggcctcatggtccagcgaggtgggctcata
accttgacctctgccaacctcagcatcttcagcaacctcgacatccgagacccgcaggaa
gtgacatttgaggtcttccgtccacctaaacacggcatactctgctttaatgatggagat
tgtgtaacagcagccggcgcagtttcaatattcacccagcgagatttggtggcggggcgc
ctggagtatcggcacgacggcagccgtgagttgtcagatgggttcaatgtaacagcaaaa
aggagggaaacacatctggattttggagtgatgataaaaatccgcctagaaagccaccag
aggccgccaacggtcataagtaatcatccagtggtggtggcggagggacagtatgtctcc
ataagcaaggagcacttggaggtggttcatgatgacagccagccctcacagatagttttt
accgtccaaagtcctcccaccctgggctttctccagcggttcacctccaacgacacgcat
cagatcaacaacggagaacagctgcccctcaatgaaacacagccacctggcgtcacagag
cagccaacacattccttcacccaggaggatctcaaccagggatggatcatctaccaccag
caggctgcaggacgcaccaacgactctgtcctgttggaggcaaccaacggggtcacgagg
gtcggacctatcaggctagagattgacatcatccctatcctgctccctcttcaggtgtct
gacttgaccctcgatgaggggtcgtccctgccactgaccactgacatcatcaaggtggcc
aatcatcacttctcagggatgaacttcctgtaccaggtcatcgttcctccgcaacacgga
tacttggagcacagccggatcccggggatgcccatcagtgctttcactcacactgaggtg
gaacgtgagtacatctcatatatccatgatggcagcgacacactgaaagacaactttacc
attgtggccaatcagacggaaatcaggaagcacagtctgccctgcactgctcacatcaat
gtcacgccggtcaatgatgagactcctgttgtttcaaccaacaaggggctgaaggtgtgg
gtggattcagtgacagaaatcaccacagacgatctgagtgcagaggattcggacactcct
cagcctgagggactggagttcatcgtcacaccaccaagcaacggacacctggccctgaag
ggggccccctccagacaaatcctgaacttcacccaaaatcacatacagactggacaactg
atgttcatgcacagtggtgctttatcgggtggctttcacttccaggtgaacgacggtgtg
aactttgcccctcgacagattttcaggacaactgcccactccctggtcctcaccttgcag
agaaaccatcccatggaggtctacccaggctctgtgacgccaatctctgagcaggagctt
caggccgtaacaaacgatgtcagcgacatgaggagaaaccactcggtggtgtttgcagta
accgatcctcctaaactcggcagcctggtccaacgtatgcccgacaactcgacgagaaac
attgtcacgttcacacagcgcatggtgaaagatggggttattctgtacgaccagaacaag
ccacagtcagtgggctggtcggctgcagacgccttctctttcaccgtttcctctcctcct
gctttccttcctccacacaccttcaccatcttaatctccgatcaggccaacgcgcatccc
gacagccctcaacacaagaccaggctgctgagcaacgcaggtgcggtggtggccgaggga
ggcagggtgacaattgaccggtctaaactcgatgcatccaatctccttgggaaagtccct
gagccgcaccggaaggaccaccacatcctgtaccgcctgatttccccgccgcgccacggg
gttctgtctatacatggacagaacgtcaccaggaaccaacctgatttctctcaagtcacc
ctaaacaagtttggcgtgacgtatgtccacgatgactcggagacaacgagcgacagcttc
actttccgggcctgggtggctcctttggatctcttctcctcttcctcgtctgctttatcc
tcctcctcctcgtcctcttcctcttcccctctctattcagcctcatcgtcgaccctttcg
gcattagatgttggttctcagcgccgtgccacggacagcctggaggtgacggagacgttc
aacatcacagtgacaccggtcaacgaccagccgccactcatcaggagcagggccccgagt
atgaaggtcgttgtcggtgagagtgtcgtactgggaccagacaatctgcaggttgaggac
catgacacccctccagaggagctgcactaccttgtgttcagcaagccaaacaacggctac
ctgacgctgggggagaggctggagccggtgacctccttcacccagtatgacgtcaaccac
ggccgcctgcactttatacagcagggagaaccctcaacaggtgttttccactttaacgta
accgacggtcatcatcgtccactctacaagatgtttagtttggaggtgataaagccctcc
gtctccatggtgaacaacactggcctgtcattggttcaaggcaagaccgctgtggtcctg
acaaccaaccagtttgcagctcagaccaacagtcgccggcaggtcaacatcacctactcc
gtcaccgcacaccctcgccacggacgcatcgccattaacgaccaggaagtcacaaccttc
cgccatgaggacttgcagtcaggacgtgtcgtctatcacatgactgatctcagcgaatca
gaggacagcttccaagtctcagtgtcagcctcgtcacccggcgttgacttcggaaatgtg
acagcacagatggtgaatgtaactgtgaggcctctgatctacctgagggagcaggtcaga
gtgcccagtggtatcgccgtgaagctcgggaaagccatgatcgatgcctccgagctggcg
agaatcagccgagccgacccggtctttcaggttctgtcacctccgaaacacgggaaacta
gtcaagatgacctctgacccgaaccgagcatcagaggtgctgaagtcatttacgttcagc
gatgtggtgcagggccgggtcgccatcgaggagactctcagtgacagtgacagcaaatca
gcactcgcatcggctggaggccacgcccccgccacacctctcaatgattcgttcatcttc
atgctgagggctggaaacgtccaaccggcgaagggcgagctccacttcaccatttatccc
caccaccagatgcatcgtggtccaagcagttcaaatacagacggtacgagtcgtgaacaa
acgacgacccaacttccaacacagaataagacgaccggaaggggaggcgggcgagggggt
tccacggcggtcagcggggaccgggttggtttgcccccccacattttgtcacataagaac
cagaacaggacacagcacaagttgaggcctcacagccgctgggggaatcacacacgcagc
ggcagtcacggaggaagatcggggggtcgtgcagagggaatgggtcgcggcccacagccc
cacactccttctgactcagacaagtatgctccagcaatccctcccgacatacaaccggtc
cacgttgagatcctccctcggcccgcctccgaccctctcctcattatcctgccgctgctg
gcttgtttgttcctcattataatcctcgtcgttttgattttggggttccgccgccgcaag
gagaaacaggcccggctgcggctcctccagcagctcgctgcagtgacaataccccccggg
ggcagcccgtacctgggccgggcagagcggagcgtggctatgccctccgtggtggtcacc
ccgctgggccctacaagctgcccaagctcccctaggatacctttaaatcccagaaggagg
agtctggcccctggggtgaccttctgggggccatttgaagctgatggagcaggtggagat
ggaaaaattagaggtggtaagattattgaaaaagatatggtaaatgcaggattccaaaca
gctctgagatctaggtcctctactccgactcttaaaggaaaccagtactgggtttga
DBGET
integrated database retrieval system
