Pseudoliparis swirei (Mariana hadal snailfish): 130205431
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Entry
130205431 CDS
T09868
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130205431 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130205431 (mtrex)
03041 Spliceosome [BR:
pswi03041
]
130205431 (mtrex)
03009 Ribosome biogenesis [BR:
pswi03009
]
130205431 (mtrex)
03016 Transfer RNA biogenesis [BR:
pswi03016
]
130205431 (mtrex)
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130205431 (mtrex)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
130205431 (mtrex)
Spliceosome [BR:
pswi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130205431 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
130205431 (mtrex)
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
Pre-60S particles
Helicases
130205431 (mtrex)
Transfer RNA biogenesis [BR:
pswi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
130205431 (mtrex)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
130205431
NCBI-ProteinID:
XP_056288777
LinkDB
All DBs
Position
15:17608987..17626188
Genome browser
AA seq
1030 aa
AA seq
DB search
MADAFGDELFSVFDDEQQTTASKKISACLTPEIGNNDTDMDTAPSATGKREADNDGGEEM
VFGKKPKHETVSDLNLAEVMPQVKVEQVETVEGCSHEVALPASDKYKPLKPRVGKAAKEY
PFVLDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSN
QKYREMYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEIMREVAWVVFDEIHY
MRDPERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWITHLHKQPCHVVYTEFRPTPL
QHYVFPSGGDGLHLVIDENGDFREDNFNTAMQVLRDAGDSGGGSGGKWDPRGRKGGTRGP
SNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQAAKLDFNNDAEKRLVEQVFNNAVDCL
SDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINM
PARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPSVGKQL
LKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKMEKYEKE
YHKIEIPNEESVFTYYKIRQQLAKLGNEIQAFIHKPKYCLPFLQPGRLVKVKNEDADFGW
GVVVNFCKKTNVKACTDSDPLIVVEVLVHCSKDSVKEARTEAAKPAAPGETGEMEVVPVM
LHLLTAISSVRLYIPKDLRPFDSRQLMLKSIQEVQKRFPDGLPLLDPVDDMGIKDSELKK
VIQKVEAFEHRMYSHPMHSDPNLEAAYSLCEKKALIAADVRAAKQELKKARTVLQMDKLK
CRKRVLRRLGFAGPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQATALLSCF
VFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSAEAKLDIDEEAYLNQFKPHLMDVVFA
WANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGITKIKR
DIVFAASLYL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcttttggagacgagttgttcagcgtgtttgacgatgaacaacaaaccacc
gccagtaaaaagatatctgcgtgtctgacaccagaaattgggaacaatgacaccgacatg
gatactgctccgtctgccacgggcaagagggaggccgacaatgatggtggagaggagatg
gtgtttgggaagaaacccaaacacgagaccgtttctgacctgaatcttgcagaggttatg
ccccaagtgaaggtggagcaagttgaaactgtggaaggatgctcacatgaggtcgctctt
cccgccagtgataaatataaaccactgaaaccgagagtggggaaagcagccaaggagtac
ccgtttgttcttgacccattccagcgtgaagccatcttatgtatcgacaacaacgagtct
gtgcttgtttctgcacacacctctgctggcaagactgtctgtgctgaatatgccattgca
ctggccctcagagagaaacagagagtgatcttcaccagccccatcaaagccctctccaac
cagaagtacagagaaatgtacgaagagttccaggatgtcggactgatgactggcgacgtc
accatcaaccccactgcctcctgcctcatcatgacaacagagatcctgaggagcatgctg
taccgagggtctgagatcatgagggaagtggcgtgggtcgtctttgacgagatccattac
atgagagatccagagcgtggtgtggtttgggaggagaccattattctgcttcctgacaat
gtgcattacgtcttcctgtcggccaccatccccaatgccaggcagtttgccgagtggata
acccacctccataaacagccgtgccatgtagtctacacagaattccgtcccactccactg
caacactacgtctttccatcaggaggcgacggactccacctcgttattgatgagaacgga
gatttcagagaggacaatttcaacaccgccatgcaggtgctgagagatgccggagactca
gggggcggctcggggggcaagtgggacccgagagggcggaaaggaggcactagaggcccg
tccaatgtgttcaagatcgtaaagatgatcatggagagaaacttccagcccgttatcatt
ttcagcttcagcaagaaagaatgcgaggcctacgctctgcaggcggctaagctggacttt
aacaacgatgccgagaaacgtctggtggaacaagtgttcaacaacgcggtggactgtctt
tctgacgaagacaagaaactccctcaggtggagcatgtgctgccgctgttgaagaggggg
ataggaattcaccacggaggccttctgcccatcctcaaagagaccatagagatccttttc
tctgagggcctcataaaggccctgtttgcgacagagacgttcgccatgggcatcaacatg
ccggctcgcactgtgctcttcaccagcgcacgcaagtttgatggcaagaaccaccgcttt
attacatcaggtgagtacatccagatgtctgggcgagccggtaggagaggaatggacgac
agggggattgttatcttcatggtggacgagaagatgagtccctctgtgggcaaacagctg
ctcaagggctcggcggaccctctgaacagcgccttccacctgacctacaacatggtgctc
aacctgctgcgtgtggaggagatcaaccccgagtacatgctggaaaagtccttctaccag
ttccagcactacagggctttgcctggtgtcgtggagaaaatggagaagtatgaaaaggag
taccacaaaattgagatccctaatgaagagagtgtgttcacttactataaaatccgacag
cagctggccaaactgggtaatgagatccaagcgttcatccacaaacccaaatactgcctc
cccttcttgcagcccgggcggcttgtcaaggtgaaaaatgaagacgccgactttggctgg
ggagtcgtcgtcaacttctgcaagaagacgaacgtgaaggcctgcaccgactctgatccg
ctgattgtggtggaggttctggtccactgcagtaaggacagtgtcaaggaggctcggact
gaggctgctaaacctgctgctccaggggagactggagagatggaggtggtcccagtgatg
ctccatctcctgaccgccatcagctcagttcgcctttacatccccaaagacctgaggccc
tttgacagcagacagctcatgctcaagtctattcaggaggtgcaaaaacgtttcccagat
ggcttgccgctgctcgaccccgtcgacgacatgggcatcaaagactctgagctgaagaaa
gtgattcagaaagtggaggccttcgagcaccgcatgtactcccaccccatgcacagcgac
cccaacctggaagctgcgtactccctctgtgagaagaaagctctgattgcagcagacgtc
cgagcggccaagcaagagctgaagaaagctcgcaccgtgctgcagatggacaagctgaag
tgccggaagagagtcctgcgacgcctcggcttcgccggcccgtctgacgtcatcgagatg
aaagggagggtcgcctgtgaaatcagcagtgccgatgagctcctgctgacggagatggtg
ttcaacgggctcttcaacgatctgacggcggaacaagccaccgccctgctgtcgtgcttc
gtcttccaggagaatgccagtgagatgcccaagctgaccgaacaactagccgctcccttg
agacaaatgcaggagtgtgcaaagcgcatcgccaaagtgtcggcagaggccaagctggac
atcgacgaggaggcctacctgaaccagttcaagcctcacctcatggacgtggtgttcgcc
tgggccaacggcgccaccttcgctcaaatctgcaagatgactgacgtctttgaagggagc
atcatccggtgcatgcgccgcctggaggaagtcctgaggcaaatgtgctctgcagccaag
gcaatcggcaacaccgagctggagaacaagttcgccgaaggaataacgaagatcaagaga
gacattgtgtttgctgccagtctctacctctaa
DBGET
integrated database retrieval system
