Pseudoliparis swirei (Mariana hadal snailfish): 130205464
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Entry
130205464 CDS
T09868
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130205464 (rc3h2)
04121 Ubiquitin system [BR:
pswi04121
]
130205464 (rc3h2)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
130205464 (rc3h2)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130205464 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf_CCCH_4
Prok-RING_4
zf-C3HC4
zf-C3HC4_4
zf-RING_4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
130205464
NCBI-ProteinID:
XP_056288840
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All DBs
Position
15:complement(11694709..11721172)
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AA seq
1151 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSSGHQPISLGCSHTVCKTCLHKLHRKACPFDQTPISTD
IDLLPVNCALLQLVGAQVPYVQQVSLSSAAEVENYEVCKVCVEELALYLKPISGAKGVAT
LSPSVLSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTITELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLTSLRPHLELLANI
DHNTDAPAPSWEELESVMLAVKLVVHGLVEFIQNFSKKSHDAPQPQANSKYKTSMCRDLR
QQGGCPRGTNCTFAHTQDELEKFRLRNKKSSSVGRTFPLAPGVMGKTFTMEGSIHTDVST
DMGQGLNGTGEDTDSLTEGVSSLTHPQLMSRGADMMEEMSRAAPNVSNEANGSNGLSTRN
TSGSTEQKPISPSRTPVNHSSASSPLTTVGRGDVGAPMPKHSQFMLRAPHPSQPSELYYQ
EPHSAYETPHYQPASGSYYQSTFHPPQKPCMARFLRSSNVPESSLPPSSYLSDPQASHPP
SSSLSGYPPHPPRDRMGAPAFHHHPGQPQYGPLAPAHGVYAPLYDSRRVWRPQLYHREDA
RSNSLPPEVLQSSVYQPPLRERFNSLDSNYCSGAEHRAGLHRDYGRVPLGYEDLFRRKQE
QWAHHHHHHNTNRPSQSSPIFTIDFATEHVESSGGQCVGCRFRGEESLAHYSPWSCGTIG
HCLSPFEPEMLAHTSTHSCSEHSELDSNGGGGGGGVSGSGNGVGKRWLHSLDHYRRLKDE
DPIIPFSEGPIISKWGAISRASRTGYHTTDPIQATACQGNANTTPINFKDYNHHLDHSDY
RWSSRGSDSSSHSSFLESEQLCASALHCRRTSISSGEKLVSDLQALQTAAYRRDRGRAES
EPDPERDIELELCALDLEVSDQQEIKSQESLDLATLQSQDASHLLPSLCSSPLLSSPVEE
HPHTEGPMTEKMDAHLLKKMAFRKSLSPGGLVSGGLGVGRLVLRTGPPLLGNTSTRACPE
TPGTEMLLNGS
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcggcccagtggactgagtttctgtcctgtcccatctgctacaatgag
ttcgacagcagcggccaccagcccatcagcctgggctgctcccacacggtgtgtaagacc
tgcctccacaaactgcaccgcaaggcctgccccttcgaccagacaccaatcagcaccgat
atcgacctgctgccggtcaactgtgccctgctgcagctggtgggggctcaggtcccatat
gtgcaacaggtgagcctgagcagcgcagcagaagttgagaactacgaggtgtgcaaggtg
tgcgtggaagagctggctctctacctaaaacctatcagcggagcaaaaggtgtggcgact
ctgagtccgagcgtgctcagtcggcccatgcagaggaagctggtgaccttggtgaactgc
cagctggtggaggaagagggccgtgtgcgggcggtgcgggcgggacggtcgctgggggaa
cgaaccataaccgagctcatcctgcagcaccagaacccacagcagctctctgccaacctg
tgggcagcggtgagggcgcggggctgccagttcctgggacccgctatgcaggaagatgct
ctgaagctagttttactggctctggaggacggctcagccttgtccaggaaggtgttggtt
ttgttcgtggtccaaaagctcgaggctcggttcccccaggcctccaaaaccagcatagga
cacgtggtgcagcttctctacagggcctcctgcttcaaggtcactaagcgggatgaagac
tcctcactgatgcagctgaaggaagagtttcgaacatacgaggctctccggagagaacac
gatgctcagatcgtccacattgccatggaggccggcctacgaatttcccccgagcagtgg
tcttctctgctgtacggagacctggtccacaagtcacatatgcagtctattatcgacaag
ttgcagtctccagagtcgtttgcgaagagcgttcaagagctaacgatcgttctgcagagg
acgggagaccctgccaacctcacaagccttagaccacatctagagctcctcgccaacata
gaccacaacacagatgccccggcaccatcatgggaggagctggaaagtgtgatgctggct
gtgaagttggtggttcatggactagtggaattcatccagaacttcagcaagaagagccac
gatgctccgcagcctcaggccaacagcaagtacaagaccagcatgtgtcgagaccttcgt
cagcaaggaggctgtccgagaggaaccaactgtacctttgcacacacacaggatgagctc
gagaaatttagactgagaaacaagaagagcagcagcgtgggccgcactttcccgttagca
ccgggggttatgggtaaaaccttcaccatggagggaagcatccacacagatgtgtcgaca
gacatgggtcagggcctcaatggcacaggggaggacacagactccctgacagagggagtg
tccagcctgactcacccacaactcatgtccagaggggctgacatgatggaggaaatgagt
agagcggcgccaaatgtatccaacgaggcgaacggatccaacgggctatctacccgaaac
acatctgggtcaactgaacagaagcccatctcaccctccaggaccccagtcaaccactcc
tcagcgtcatctcccttgacaacggttgggcggggtgatgtgggcgctcccatgcccaaa
catagtcagttcatgctgcgtgcaccacatccttctcagccgtcagagctgtactatcag
gagccccactctgcatatgaaacgccccattatcaaccagcctcaggttcgtactaccaa
tcgacttttcatcctcctcaaaaaccctgcatggctcgcttccttcgatcctccaacgtc
ccagaatcctctctgccgccctcctcctaccttagtgaccctcaagcgtcgcacccacct
tcctcctctctatcggggtacccgccacacccgcctagagatcggatgggagctcctgcc
ttccatcaccacccggggcagcctcaatatgggcctctggctccggctcatggtgtttat
gcccccctctacgacagcaggagagtatggaggcctcagctgtaccacagagaggatgcc
aggagtaactcactgcctccagaggtgctgcagtcctccgtctaccagcctccactcagg
gagagattcaactctctagacagtaactactgctctggagctgaacaccgtgcaggccta
cacagggattacggccgtgttcctctcggctacgaggatctgttcagaaggaagcaggaa
cagtgggctcaccatcaccaccatcacaacaccaacaggccctcccagtcctccccgatc
ttcaccatcgattttgcaactgagcatgtggagagcagtggaggccagtgtgtggggtgc
aggttcagaggcgaggaaagcttagcacactactccccgtggtcctgtggtaccatcggc
cactgtctcagcccctttgagcccgaaatgctcgcgcacacctcaactcactcctgctca
gagcactcggagttagacagcaatggcggtggaggaggaggtggagtcagtggcagcggg
aatggcgtcgggaagcgatggctccattcattggatcattaccggcgcttgaaagacgag
gacccgatcattccctttagtgaggggcccattatctccaagtggggtgccatatccagg
gcatctcgcacgggctaccacaccaccgaccctatccaagccacggcctgccagggcaac
gccaatacgacacccatcaactttaaagattataaccaccacttggatcacagcgactac
aggtggagctccagaggatccgactcctccagtcactccagtttcctagagagtgagcag
ctctgtgcatcagcgcttcactgccgtcgaacttcgataagcagcggtgagaaacttgtg
tcagatctgcaagcccttcagaccgccgcctaccgccgggatcggggccgggccgaaagc
gaaccggacccggaacgagacatcgagctcgaactgtgcgccctcgacttggaggtttca
gaccagcaggagatcaagtctcaggagtctttagacctggccaccctgcagtctcaggat
gcgtcccacctcctcccatcactctgctcctctcccctcctctcctctcctgtggaggag
catccccacacagagggtcccatgacagaaaagatggacgctcacctgctgaaaaagatg
gccttcaggaagtctctgtctcctggagggttggtctcaggaggtctcggcgttggcagg
cttgtgctgcgtactggacctcctctactggggaacacatcgacccgggcttgtccggaa
acgcccgggacagagatgctgctgaatggaagctaa
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