Pseudoliparis swirei (Mariana hadal snailfish): 130205484
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Entry
130205484 CDS
T09868
Symbol
otpa
Name
(RefSeq) orthopedia homeobox a
KO
K24901
homeobox protein orthopedia
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130205484 (otpa)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
130205484 (otpa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
OAR
Homeobox_KN
DUF1509
Motif
Other DBs
NCBI-GeneID:
130205484
NCBI-ProteinID:
XP_056288873
LinkDB
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Position
15:19360677..19365589
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AA seq
332 aa
AA seq
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MLSHADLLDARLGMKDAAAELLGHREALKCRLGGGGPDPGHSGGELGPGSDGVEGATMLP
GDDISGGGGGGGGGGGGGSNAVQVNSKEQEKQNNNSNNNNRSQSQSQSQSQKQKRHRTRF
TPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTSNVFRS
PGTLLPTHHHGLSQFPSAAAAAAVAMGDSLCSFHANDTRWATAGMPGVSQLQLPPSLGRQ
QAMAQSLSQCSLGAGQPHNSMGLSNMSNGSGLQSHLYQPTFPGMVPASLSGPTNMTHSPQ
LCSSPESEVWRGTSIASLRRKALEHTVSMSFT
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgctatctcatgccgacctcctggatgctcgcctcgggatgaaggacgcggccgcggag
ctgctgggccaccgggaggctctgaagtgccggctcggcggaggagggcctgaccccggg
cactccgggggggagctcggcccgggctcggacggcgtggaaggagccacgatgctcccg
ggcgacgacatcagcggcggcggaggaggtggaggtggaggaggtggtggaggatccaac
gcggtgcaggtgaacagcaaagagcaggagaagcagaacaataacagcaacaacaacaac
aggagccagagccagagccagagtcagagccagaaacagaagcggcaccggacccgcttc
acgccggcgcagctcaacgagctggagaggagcttcgccaagacgcactacccggacatc
ttcatgcgggaggagctcgcgctgcggatcggcctcacggagtcccgcgtgcaggtctgg
tttcagaaccgacgcgccaagtggaagaagcgcaagaagacctccaacgtcttccggtct
ccgggcaccctgctgcccacgcaccaccacggcctgtctcagttcccgtccgcggcggcg
gcggcggccgtggccatgggcgacagcctgtgctccttccacgccaacgacacccgctgg
gccacggcggggatgcccggtgtgtctcagctgcagctgccgccgtctctgggccgccag
caggccatggcgcagtcgctgtcccagtgcagcctcggcgccgggcagccgcacaactcc
atgggtctgtccaacatgtcgaacggctccgggctccagtcgcacctctaccagcccact
ttccccgggatggtgcccgcgtccctctcgggccccaccaacatgacccactcgccgcag
ctgtgcagctccccggagagtgaggtgtggagagggacaagcatcgcgtcgctgcgccgc
aaagcgctggagcacacagtgtccatgagcttcacctag
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