Pseudoliparis swirei (Mariana hadal snailfish): 130205606
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Entry
130205606 CDS
T09868
Symbol
thbs4b
Name
(RefSeq) thrombospondin-4-B
KO
K04659
thrombospondin 2/3/4/5
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04145
Phagocytosis
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
pswi04518
Integrin signaling
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130205606 (thbs4b)
04518 Integrin signaling
130205606 (thbs4b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
130205606 (thbs4b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
130205606 (thbs4b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130205606 (thbs4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130205606 (thbs4b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130205606 (thbs4b)
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130205606 (thbs4b)
Membrane trafficking [BR:
pswi04131
]
Endocytosis
Phagocytosis
Opsonins
130205606 (thbs4b)
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
130205606 (thbs4b)
Exosomal proteins of colorectal cancer cells
130205606 (thbs4b)
Exosomal proteins of bladder cancer cells
130205606 (thbs4b)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130205606 (thbs4b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
EGF
EGF_MSP1_1
cEGF
Motif
Other DBs
NCBI-GeneID:
130205606
NCBI-ProteinID:
XP_056289058
LinkDB
All DBs
Position
15:complement(17330140..17346943)
Genome browser
AA seq
939 aa
AA seq
DB search
MGVWTALILASQLLLKLSLHVEAQALVYDLLTSPDCLPDLLQGGLAEQGVREAFILTTFK
LQPRTGTSLFSLFNPRDNRKYFEFTVMGKLNRAVLRYLRSDKRMSSVTFNNLVLADGQQH
RLLFHLKGMQPPGPGGVELHLDCRLVETLRDLPAAFQGLPAGYGTVELKTMQARDQESLD
ELKLVVGDTFENVAALQDCHFQQKDSVQTLGVNTKQLSNQMLDLTKVINELKDVLIQQVK
ETSFLRNTISECQACGLGGTEVVKARCTALVCFRENMCIETADGVECGPCPDGYTGDGFN
CDDVDECQFNPCFPGVECVNTAPGFRCDACPLGYSGLAVEGVGILYAQTNKQVCDDIDEC
KDPNSGCAANSICSNSVGSYHCGSCNTGFTGDQVKGCKPAISCGNSLTNPCDANAQCIPE
RDGSVHCQCGIGWAGNGYLCGKDTDIDGYPDEKLKCKDLSCKKDNCKFVPNSGQEDADRD
SYGDACDADADGDGIPNEQDNCWLKANLDQRNSDKDSHGDACDNCRMVENPDQRDTDSDG
KGDACDDDMDGDGLKNFLDNCQLVQNRDQVDRDGDGVGDACDSCPDTPNPNQSDIDNDLV
GDSCDTNQDSDGDGHQDTKDNCPFVINSSQLDSDKDGLGDECDDDDDNDGIPDSLPPGPD
NCRLVPNSDQIDDNSDGVGDICESDFDQDKVIDRIDNCPENAEVTLTDFRAYQTVVLDPE
GDAQIDPNWIVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIFG
YQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSRSGPGEHLRNSLWHTGDTND
QVRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGTELVADTGVTIDTTMRGGRL
GVFCFSQENIIWSNLKYRCNDTLPEDFQEFSTHHGVDSL
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgtggactgccctgattctggcctcgcagctgctgttaaaactgagcttgcac
gtggaagcccaggctttagtctatgatctgctcacctcgcctgattgcctgccagacctg
ctgcaggggggtctggccgagcagggggttcgcgaggctttcatcctcaccacctttaag
ttgcagcccaggaccggaaccagtttgttttccctgttcaacccccgggacaacaggaag
tactttgagttcacggtgatgggaaagctcaaccgagccgtgctgcgctacctgcggagt
gacaagaggatgagctcggtgaccttcaacaacctggtgctggcggacggccaacaacac
cgactcttgttccacctgaaggggatgcagccgccggggccgggcggggtggagctgcat
ctggactgcaggctggtggagacgctcagagatctcccggccgccttccaaggtttgccg
gcgggctacggtacggtggagctgaagaccatgcaagccagggatcaggagagtttagac
gagctcaagctggtggtcggggacacgtttgagaatgtagcggctctacaggactgccac
ttccaacaaaaggactctgtccagactctgggggtcaacacgaagcagctgtccaatcaa
atgctggacttaaccaaggtgataaatgagctgaaagacgtcctcatccagcaggtcaaa
gagacctcctttctcagaaacaccatttcagagtgtcaggcgtgtggtctgggtggtact
gaggtggtgaaagcaaggtgtaccgcgttggtctgtttccgtgagaatatgtgcatcgag
acagcagatggtgtcgagtgcggcccgtgtcccgacggctacaccggggacggattcaac
tgtgacgacgtggacgagtgccagttcaacccctgcttccccggcgtggagtgtgtgaac
actgccccgggcttccgctgtgacgcctgtccgctgggctacagcggcctggccgtggag
ggggtgggcattttgtatgcccagaccaacaaacaggtctgtgacgacattgacgaatgt
aaagatcccaacagcggctgcgctgccaactccatctgctccaactccgtgggctcctac
cactgcggcagctgtaacacaggtttcacaggagatcaagtgaagggctgcaagccagcg
atcagctgcggcaacagcctgacgaacccgtgcgacgccaacgcccagtgtattccagag
agagacgggtcagtccattgtcagtgtggaattggctgggccggtaatggatacctgtgt
gggaaggataccgacattgacggctacccagatgagaaactcaaatgcaaagatttgagc
tgtaaaaaggataactgcaagttcgttcctaactccggtcaagaggatgcggacagggat
agttatggagacgcctgtgacgccgatgccgatggggacggtatacccaacgagcaggac
aactgctggttgaaagccaacttggaccagaggaacagcgacaaggacagccatggagac
gcctgtgataactgccgcatggtggagaaccctgaccagagggacaccgacagcgacggc
aaaggagacgcctgcgacgacgacatggacggagacggcctgaagaactttttagacaat
tgccagcttgtccagaaccgagaccaggtggaccgggacggagatggagtgggagacgcc
tgtgacagctgccccgacacccccaacccaaatcagtcggacattgacaatgacctggtt
ggagactcctgtgacacaaaccaagacagtgatggcgacggtcatcaggataccaaggat
aattgcccattcgtaataaatagctcccagctggacagtgacaaagacgggctgggagac
gagtgtgacgatgacgacgacaacgatgggatccctgactccttaccaccgggaccagac
aactgccggctggtaccgaattctgaccagatcgatgacaatagtgatggagttggagac
atctgtgagtccgacttcgaccaggacaaagtgatcgacaggattgacaactgtcctgag
aatgctgaggtcaccttgactgacttcagggcctatcagacggtggtgctggaccccgag
ggcgacgctcagatcgaccccaactggattgttttgaaccagggaatggaaattgtgcag
accatgaatagtgacccaggactggctgttggctacacggctttcagtggcgtggacttt
gaaggaaccttccacgtgaacacagtgaccgacgacgactacgccggcttcatcttcggc
taccaggactcgtcctccttctacgtggtgatgtggaagcagaccgaacagacctactgg
caggccacgcccttcagagcggtggccgagcccggcatccagctgaaggcggtgaagtct
agatcgggccccggggagcacttgaggaactcgctgtggcatacgggagacaccaacgac
caggtgcgtcttctgtggaaggacccccgaaatgtgggctggaaggacaaggtgtcctac
cgctggtacctgcagcaccgcccacaggtcggctacatcagggcgaggttttatgaagga
actgagctagtggccgacaccggcgtgaccatcgacacgaccatgaggggagggcggctc
ggcgtgttctgtttctctcaggaaaacatcatctggtccaatttgaaataccgctgcaac
gacaccctcccggaggacttccaggagttcagcactcaccacggtgtcgactcgctctga
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