Pseudoliparis swirei (Mariana hadal snailfish): 130205611
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Entry
130205611 CDS
T09868
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pswi03009
]
130205611 (ddx55)
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130205611 (ddx55)
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
Pre-60S particles
Helicases
130205611 (ddx55)
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
SBF_like
HMUDK_HMUD1
Motif
Other DBs
NCBI-GeneID:
130205611
NCBI-ProteinID:
XP_056289066
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All DBs
Position
15:23209443..23214991
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AA seq
589 aa
AA seq
DB search
MDGSTEGTWDGLPVKLTDEILQTLEEVKFTHMTPVQSACIPLFMSNKDVAAEAVTGSGKT
LAFVIPIIELLLRREDKLKKMQVGALVITPTRELALQISEVMALFLQKFPQFTQILLIGG
TNPMDDVEKFKDKGAHVVIATPGRLEDMFRRKADGLDLASSVRSLDVLVLDEADRLLDMG
FEASLNTILGHLPKQRRTGLFSATQTQELEKLVRAGLRNPVRISVKEKGVAASAVAQKTP
SRLCNYYTICRTENKFNQLVAFLRQHKLEKHLIFFSTCACVEYYGRALETLVKRVTVHCI
HGKMRSKRNQIFADFRALKNGILVCTDVMARGIDIPDVNWVLQYDPPSSACAFVHRCGRT
ARIGNQGNALVFLLPMEESYVNFLSINQKCPLQRMVLSGEALDVLPRVKALSLADRAMFD
RGMRAFVSFVQAYAKHECSLIFRIKDLDLARLARGFALLRMPKMPELKGKTFPGFTRTPL
DTDAIRYKDKQREKQRQKMLLELQQKLKEPPPPRRSFIRNKSWSKQTTKKERRKKRSAKR
KLEEGSDVEDEDMKELLDDTRLLKRLKKGKISKEDFEKQMASESGAEEA
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggacggctcgacggaggggacgtgggacggtttaccggttaaactcaccgacgagatt
ttacagacgctcgaggaagtgaagttcacccacatgacacctgtccagtccgcttgcatt
ccgctcttcatgagtaacaaagacgtggctgctgaggcggtgaccggcagcgggaagacg
ctcgccttcgtcatccccatcatagagctgctcctgaggagagaggacaagctgaagaag
atgcaggtcggggctctggtcatcacccccacacgagagctggcccttcagatcagtgaa
gtgatggcgctgttccttcagaagttccctcagttcacgcagattctgctgatcggtggc
accaacccgatggacgacgtggagaagttcaaagataaaggggcccacgttgtgattgcg
acaccgggccgcctggaggacatgttccggaggaaggcggacggtctggacctggccagc
tcggtccggagtctggacgtgttggttctggacgaggcggaccggctgctggacatgggc
ttcgaggccagtctgaacaccatcctgggccacctgcccaaacagaggcggacgggcctg
ttctcggccacgcagacccaggagctggagaagctggtgcgggccggcctcaggaacccg
gtgcgcatctcggtgaaggagaagggcgtggcggcgagcgccgtcgcccagaagacgccg
tcccgcctctgcaactactacacgatctgcaggacggagaacaagttcaaccagctggtg
gcgttcctccgtcagcacaagctggagaagcatctcatcttcttcagcacctgtgcgtgc
gtggagtactacggccgcgcgctggagacgctggtcaagagggtcacggtgcactgcatc
cacggcaagatgaggagcaagcgcaaccagatcttcgccgacttccgggccctgaagaat
ggcatcttggtgtgtaccgacgtcatggcgagagggatcgacatccccgatgtcaactgg
gtgctgcagtacgatcctcccagcagcgcctgtgcgtttgtgcatcgctgcggacgcacg
gctcgcatcggtaaccagggcaacgccctcgtcttcctgctgccgatggaggagtcctac
gtcaacttcctgagcatcaaccagaagtgccccctccagaggatggtgctgtcgggggag
gcgctggacgtgctccccagggtgaaggccttgtctctggccgaccgcgccatgttcgac
cgcggcatgcgggccttcgtgtccttcgtccaggcctacgccaaacacgagtgcagcctc
atcttcaggatcaaagatctggacctggcccgtctggctcgtggcttcgcgctcctccgc
atgccgaagatgccggagctgaaggggaagacgttccccggcttcacgcgcacgccgctg
gacacggacgccatccgctacaaggacaagcagcgcgagaagcagcggcagaagatgctg
ctggagctgcagcagaagctgaaggagccgccgcccccccgccggagcttcatcaggaac
aagtcctggtccaagcagaccaccaagaaggagcgccgcaagaagaggtcggccaagagg
aagctggaggagggctctgacgtggaggacgaggacatgaaggagctgctggacgacacg
cgcctcctcaagcggctgaagaagggaaagatcagcaaggaggacttcgagaagcaaatg
gcgagcgagtcgggggccgaggaggcgtga
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