Pseudoliparis swirei (Mariana hadal snailfish): 130205626
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Entry
130205626 CDS
T09868
Symbol
sptan1
Name
(RefSeq) spectrin alpha chain, non-erythrocytic 1
KO
K06114
spectrin alpha, non-erythrocytic (fodrin)
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04210
Apoptosis
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
130205626 (sptan1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130205626 (sptan1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pswi04812
]
130205626 (sptan1)
Cytoskeleton proteins [BR:
pswi04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
130205626 (sptan1)
Intermediate filaments
Intermediate filament-binding proteins
130205626 (sptan1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
EFhand_Ca_insen
SH3_1
SH3_9
EF-hand_1
EF-hand_7
EF-hand_6
SH3_2
EF-hand_8
SH3_3
SH3_10
SCO1-SenC
Motif
Other DBs
NCBI-GeneID:
130205626
NCBI-ProteinID:
XP_056289085
LinkDB
All DBs
Position
15:complement(491177..540974)
Genome browser
AA seq
2417 aa
AA seq
DB search
MDTSGKVLETAEDIQERRQQVLDRYRRFKELSVVRRTKLEDSYRFQFFRRDADELEKWIQ
EKLQIASDENYKDPSNLQGKLQKHQAFEAEVQANAGAIIKLDETGQLMMSEGHFSSETIR
TRLEELHRLWDLLLLRTREKGTRLLQAQKLVQYLRECEDALGWISDKEAMASSEELGQDL
EHVELLQKKFEEFQTDLAAHEERVNEVNQLAARLAQEAHPEGELILRKQDEVNAAWQRLK
GLAQQRQGKLFGAAEVQRFNRDVDETISWIKEKEQLMASDDFGRDLASVQALLRKHEGLE
RDLAALEDKVNTLGGDAERLQQTHPHNAAQIHLKKDELVANWEQIRTLAAERHAHLNDSY
RLQRFTADFRDLTSWVTEMKALINADELANDVAGAEALLDRHQEHKGEIDAHEDSFRATD
EAGHALLSTGHYASDEVKDKLGVLSQEKEALLRLWEERRQQYEQCMDLQLFYRDTEQVDN
WMSKQEAFLLNEDLGDSLDSVEALLKKHEDFEKSLSAQEEKITALDEFATKLIQNSHYAK
EDVATRRDALLSRRNALHERAQTRRAALEDSFHLQQFFRDSDELKSWINEKMKTATDEAY
KDPSNLQGKVQKHQAFEAELSANQSRIDALQKSGQELLDGKHYASSEVAERMEEVGSQWK
KLLEATELKGIKLREANQQQQFNRNVEDIELWLYEVEGHLASDDYGKDLTSVQNLQKKHA
LLEADVAAHQDRIDGITIQARQFQEAGHFDADNIRKKQESLVLRYDALREPMAARKQKLS
DSLRLQQLFRDVEDEETWIREKEPIAASTNRGKDLIGVQNLLKKHQALQAEITGHDPRIK
AVTQKGEAMVEEGHFAGEEVQLKLGELHGRWASLKAKAGQRRQDLEDSLQAQQYFADANE
AESWMREKEPIVGSPDYGKDEDSAEALLKKHEALMSDLSAYGSSIHGLKEQAQSCRQQVA
PTDDETGKELVLALYDYQEKSPREVTMKKGDVLTLLNSTNKDWWKVEVNDRQGFVPAAYV
KKLDPTQSSSRENLLDEHGSIALRQDQIQSQLLLKEVCSVSVRMKQVEELYGALLESGDK
RKDMLEKSCKKFMLFREASELQQWIHEKENTLTNEELGSDLEQVEVLQKKFDDFQKDLKA
NESRLRDINKVASELESEGLMAEEAPMVQAQQQQQVQGAAPGQDEADRNTPSPWKNIRLA
VQTTANFNTIKELNNRWRSLQQLAEDRSNMLGSAHEVQRFHRDADETKEWIEEKNQALNT
DNYGHDLASVQALQRKHEGFERDLAALGDKVNSLGETAERLIQSHPEAVDDIQEKCTELN
TAWSSLVGRADQRKDKLGSSHDLQRFLSDFRDLMSWINGIRGLVSSEELAKDVTGAEALL
ERHQEHRTEIDARAGTFQAFEQFGQQLLLRGHYASPEVQQQLEALDRERAGLEKAWVQRR
MMLDQCLELQLFNRDCEQAENWMAAREAFLASDDKGDSLDSVEALIKKHEDFDKAINVQE
EKIAALQSFADQLVGADHYAKPEIFNRRNEVLDRWRRLKAQMIEKRSKLGESQTLQQFSR
DVDEIEAWISEKLQTATDESYKDPTNIQLSKLLSKHQKHQAFEAELHANADRIRGVIDTG
NTLIQRGACAGSEDAVKARLGALDEQWQFLVHKSSEKSHKLKEANKQQNFNTGIKDFDFW
LSEVEALLASEDYGKDLASVNNLLKKHQLLEADVSAHEDRLKDLNGQADSLMAGTAVDTA
QVKVKRDAVNGRFAKITSMAAGRRARLNESHRLHQFFRDLDDEESWIKEKKLLVSSEDYG
RDLTGVQNLRKKHKRLEAELGAHEPAIQAVLDTGKKLSDDNTIGQEEIQQRLAQFVDHWK
ELKDLSGTRGQRLEESLEYQQFVANVEEEEAWINEKLNLVGSEDYGDTLAAVQTRTTYTQ
DGVTLSTRLVMMSSLCSGEKENSLKTDDYGRDLSSVQTLLTKQETFDAGLQAFQQEGISS
ITALQDQLLAAQHVQQRALQERHAALLQRWRQLLGDSAARRERLLQAQEHFRKVEDLFLT
FAKKASAFNSWFENAEEDLTDPVRCNSLEEIRALREAHEAFRASLSSAQADFGQLAELDR
QIKSYQVASNPYTWFTMEALEETWRNLQKIIKERELELQKEQRRQEENDKLRQEFAQHAN
AFHQWLQETRTYLLDGSCMVEESGTLESQLEATKRKHQEIRAMRSQLKRIEDLGAAMEEA
LILDNKYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARNTTGVTEEALKEFSMMFKHF
DKEKSGRLNHQEFKSCLRSLGYDLPMVEEGEPDPEFEAILDTVDPNRDGNVSLQEYMAFM
ISRETENVKSSEEIESAFRALSAENKPYVTKEDLYQNLSREQADYCLSHMKPFLDGKGRE
LPAAFDFVEFTRSLFVN
NT seq
7254 nt
NT seq
+upstream
nt +downstream
nt
atggacacctctggtaaagttctggagacggccgaggacatccaggagcgccgccagcag
gtgctggaccgctaccggcgcttcaaggagctgtccgtggtgcggcgcaccaagctggag
gactcgtaccgcttccagttcttccgccgcgacgccgacgagctggagaaatggatccag
gagaagctgcagatcgcttctgatgagaactacaaggacccctccaacctgcaggggaag
ctgcagaagcaccaggcctttgaagctgaggtccaggccaacgccggagccatcatcaaa
ctggacgagaccggccagctgatgatgagcgaggggcacttctcctccgagaccatccgg
acccgtctggaggagctccaccgcctgtgggacctcctgctgctgaggacccgggagaag
gggacccggctgctgcaggcccagaagctggtccagtacctgagggagtgtgaggacgct
ctgggctggatcagtgacaaggaggccatggcctcctccgaggagctgggccaggacctg
gagcacgtggagctgctgcagaagaagttcgaggagttccagacagacctggcggcccac
gaggagcgcgtgaatgaggtgaaccagctggcggcgcggctcgcccaggaggctcaccct
gagggcgagctcatcctccgcaagcaggacgaggtgaacgccgcctggcagcgcctcaag
ggcctcgcccagcagaggcagggcaagctgttcggggcggccgaggtgcagcgcttcaac
agggacgtggatgagaccatcagctggatcaaggagaaggagcagctcatggcctccgat
gactttgggagggacctggccagcgtgcaggctctgctgcgcaagcacgagggtctggag
agggacctggcggccctggaggacaaggtgaacaccctgggaggagacgcggagcggctg
cagcagactcatcctcacaacgcggctcagatccacctgaagaaagacgagctggtggcc
aactgggagcagatccgcacgctggcggcggagcgccacgcccacctcaacgactcctac
aggctgcagcgcttcaccgctgacttcagggacctgaccagctgggtgacggagatgaag
gctctgatcaacgctgacgagctggccaacgacgtggccggagccgaggctctgctggac
cggcaccaggagcacaagggagagatcgatgctcacgaagactccttcagagccacggac
gaagccggccacgccctgctgagcaccggccactacgcctcggacgaggtgaaggacaag
ctgggcgtgctctcccaggagaaggaggcgctgctgcggctgtgggaggagcgccggcag
cagtacgagcagtgcatggacctgcagctcttctacagggacacggagcaggtggacaac
tggatgagcaagcaggaggccttcctcctgaacgaggacctgggggactccctggacagc
gtggaggctctgctgaagaagcacgaggactttgagaagtcgctgagcgcccaggaggag
aagatcacggctctggacgagttcgctaccaaacttatccagaacagccactacgccaaa
gaggacgtggccacccgcagagacgctctgctgagccggcgtaacgctctgcatgagcgt
gctcagacccggcgcgcggcgctggaggactcgttccacctgcagcagttcttcagggac
tctgatgagctgaagagctggatcaacgagaagatgaagacggccacggacgaggcctac
aaggacccgtccaacctgcagggcaaggtgcagaagcaccaggccttcgaggccgagctg
tcggccaatcagagccgcatcgacgctctgcagaagtccggccaggagctgctggacggg
aagcactacgcctcctcggaggtggccgagcgcatggaggaggtgggctcccagtggaag
aagctgctggaggccacggagctcaaaggcatcaagctgcgggaggccaaccagcagcaa
cagttcaacaggaacgtggaggacatcgagctgtggctgtacgaggtggagggccacctg
gcctcagacgactacggcaaagacctgaccagcgtccagaacctgcagaagaagcacgcg
ctgctggaggccgacgtggctgctcaccaggaccgcatcgatggcatcaccatccaggct
cgccagttccaggaggccggacactttgacgccgacaacatccgcaagaagcaggagtct
ctggtgctgcggtacgacgccctgagggagcccatggcggcgcgcaagcagaagctgtcc
gactccctgaggctgcagcagctgttcagagacgtggaggacgaggagacctggatcagg
gagaaggagcccatcgctgcctccaccaacagaggcaaagacctcatcggggtccagaac
ctgctgaagaagcaccaggcgctgcaggcggagatcaccggacacgacccccgcatcaag
gctgtgacccagaagggagaggccatggtggaggaaggccactttgctggcgaggaggtg
cagctgaagctgggggagctgcacggccgctgggcctccctgaaggccaaggcgggccag
cggcggcaggacctggaggactcgctgcaggcccagcagtactttgccgacgccaacgag
gccgagtcctggatgagggagaaggagcccatcgtggggagcccggactacggcaaggac
gaggactccgccgaggcgctgctgaagaagcacgaggccctgatgtcggacctgagcgcc
tacggcagcagcatccacgggctgaaggagcaggcccagtcctgcaggcagcaggtggcg
cccacggacgacgagacgggcaaggagctggtcctggccctgtacgactaccaggagaag
agtccccgcgaggtcaccatgaagaagggggacgtcctcacgctgctcaacagcaccaac
aaggactggtggaaggtggaggtgaacgaccggcagggcttcgttcctgctgcctacgtg
aagaagctggacccgacccagtcctcgtccagggagaacctgctggacgagcacggcagc
atcgccctgcgccaggaccagatccagagccagctgctcctcaaggaggtctgcagcgtg
tctgtgcgcatgaagcaggttgaagagctgtatggggctctgctggagtcgggggacaag
aggaaggacatgctggagaagagctgcaagaagttcatgttgttccgggaagccagcgag
ctgcagcagtggatccacgagaaggagaacacgctcaccaacgaggagcttggctccgac
ctggagcaggtggaggtgctgcagaagaagtttgacgacttccagaaggacctgaaggcc
aacgagtctcgcctgagggacatcaacaaggtggcgtctgagctggagtctgagggcctg
atggcggaggaggccccgatggtccaggcccagcagcagcagcaggtgcagggagctgct
cctggacaggatgaagccgaccgcaacacgccgtctccatggaagaacatacgtctggct
gttcaaactacggccaactttaataccatcaaggagctcaacaaccgctggaggtctctg
cagcagctcgctgaggaccggagcaacatgctggggagcgcccacgaggtgcagaggttc
cacagggatgctgatgagaccaaggagtggatcgaggagaagaaccaggcgctcaacacg
gacaactacggccacgacctggcgagtgtccaggccctgcagcgcaaacacgagggcttt
gagagagacctggcggcgctgggggacaaggtgaactctctgggggagacggcggagcgt
ctgatccagtcccacccggaggccgtggatgacatccaggagaagtgcacggagctgaac
acggcgtggagcagcctggtgggccgggccgaccagcgcaaggacaagctgggcagctcc
cacgacctgcagcgcttcctgtctgacttcagagacctgatgtcctggatcaacggcatc
cgaggcctggtgtcctcggaggagctggccaaggacgtgacgggggccgaggcgctgctg
gagagacaccaggagcaccgcaccgagatcgacgcccgcgccgggaccttccaggccttc
gagcagttcggccagcagctgctgctgcggggccactacgccagccccgaggtgcagcag
cagctggaggccctggaccgggagagggccggcctggagaaggcctgggtgcagcgccgc
atgatgctggaccagtgcctggagctgcagctcttcaacagggactgcgagcaggcggag
aactggatggcggcgcgcgaggccttcctggcgagcgacgacaagggggacagcctggac
agcgtggaggcgctcatcaagaagcacgaggacttcgacaaggccatcaacgtgcaggag
gagaagatcgcggctctgcagtcgtttgccgaccagctggtgggagccgatcactacgcc
aagccggagatcttcaaccggcgcaacgaagtcctcgacaggtggcgccggctgaaggct
cagatgatcgagaagcgctccaagctgggcgagtctcagacgctgcagcagttcagcaga
gacgtggacgagatcgaggcgtggatcagcgagaagctgcagacggccacggacgagtcc
tacaaggaccccaccaacatccagctttccaagctgctgagtaagcaccagaagcaccag
gcctttgaggccgagctccacgccaacgcagaccggatccgaggcgtcatcgacacgggg
aacacgctgatccagagaggagcgtgtgctggcagcgaggacgccgtcaaggcgcgcctc
ggggccctagacgagcagtggcagttcctggtccacaagtcttcagagaagagccacaaa
ctgaaggaagccaacaagcagcagaacttcaacaccggcatcaaggactttgacttctgg
ctgtcagaggtggaggctctgctggcctctgaggactacgggaaggacctggcctccgtc
aacaacctgctgaagaagcaccagctgctggaggccgacgtctctgctcacgaggaccgg
ctgaaggacctgaacggccaggccgacagcctgatggccggcaccgccgtggacacggct
caggtgaaggtcaagcgcgacgccgtcaacgggcgcttcgccaagatcaccagcatggcg
gccgggcggcgggcgcggctcaacgagtcgcaccggctgcaccagttcttcagggacctg
gacgacgaggagtcctggatcaaggagaagaagctgctggtgagctcggaggactacggc
cgagacctgaccggagtccagaacctgaggaagaagcacaagaggctggaggcggagcta
ggagctcatgagcccgccatccaggcggtgctggacacggggaagaagctctctgacgac
aacaccatcggccaggaggagatccagcagaggctggcccagtttgtggaccactggaag
gaactcaaggacctgtctggaaccaggggccagaggctggaggagtccctggagtaccag
cagtttgtggccaacgtggaagaggaggaggcgtggatcaacgagaagctgaacctggtg
ggcagcgaggactacggggacacgctggccgctgtgcagacacgcaccacctacacgcaa
gatggcgtcacgctaagcacacggcttgtgatgatgtcatctctgtgttcaggtgagaag
gagaacagcctgaagactgacgactacggccgagacctgtcctccgtccagaccctgctc
accaagcaggagacgtttgacgcggggctgcaggccttccagcaggagggcatcagcagc
atcacggcgctgcaggaccagctgctggcagcgcagcacgtgcagcagcgcgcgctgcag
gagcgccacgccgcgctgctgcagcgctggaggcagctgctgggcgactcggccgcccgc
agggagcggctgctgcaggcgcaggagcacttcaggaaggtggaggacttgttcctgacc
ttcgccaagaaggcgtcggccttcaacagctggttcgagaacgcggaggaggacctgacg
gacccggtgcgctgcaactcgctggaggagatccgggccctgcgcgaggcccacgaggcc
ttcagggcctcgctgagctcggcgcaggccgacttcggccagctggccgagctggaccgg
cagatcaagagctaccaggtggcctccaacccctacacctggttcaccatggaggcgctg
gaggagacctggaggaacctgcagaagatcatcaaggagcgagagctggagctgcagaag
gagcaacgacgacaagaggagaacgacaagctgcgccaggagttcgctcagcacgccaac
gccttccaccaatggctgcaggagacacggacgtatcttctggacgggtcgtgtatggtg
gaagaatctggaaccctggagtctcagctggaggccaccaagcgtaagcaccaggagatc
cgcgccatgcgcagccagctgaagcggatcgaggacctgggggccgccatggaggaggcc
ctgatcctggacaacaagtacacggagcacagcacggtgggcctggcgcagcagtgggac
cagctggaccagctgggcatgaggatgcagcacaacctggagcagcagatccaggcccgg
aacacgactggagtgacggaggaggcgctgaaggagttcagcatgatgttcaagcacttt
gacaaggagaagtctggccgtctgaaccaccaggagttcaagtcgtgtctgcgctctctg
ggctacgacctgccgatggtggaggagggagaacccgacccagagttcgaggccatcctg
gacaccgtggaccccaacagggacgggaacgtgtcgctgcaggagtacatggccttcatg
atcagccgcgagacggagaacgtgaagtccagcgaggagatcgagagcgccttcagagcc
ctgagcgcggagaacaagccctacgtcaccaaggaggatctctaccagaacctgagccgg
gagcaggcggactactgcctgtcccacatgaagccgttcctggacgggaagggccgcgag
ctgccggccgccttcgacttcgtggagttcactcgctcgctgttcgtcaactga
DBGET
integrated database retrieval system
