Pseudoliparis swirei (Mariana hadal snailfish): 130205806
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Entry
130205806 CDS
T09868
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130205806 (ythdc2)
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130205806 (ythdc2)
Spliceosome [BR:
pswi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130205806 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
R3H
OB_NTP_bind
DEAD
HA2_N
Ank_2
AAA_19
ATPase
Ank
nSTAND3
Ank_4
AAA_22
Ank_5
SRP54
AAA_30
AAA_23
AAA_16
Ank_3
AAA_7
PhoH
Motif
Other DBs
NCBI-GeneID:
130205806
NCBI-ProteinID:
XP_056289319
LinkDB
All DBs
Position
15:1606505..1631907
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AA seq
1391 aa
AA seq
DB search
MSSAGSASHKPARSQHSRHHGSASKGFKDIHIDEEVKISMNLSLERFHYSDQREMEFPSS
LSSTERAFIHRMAQSLGYISKSKGKGPTRFLTIKKKSGADKPRPNMPLAVSHNSLYFIRS
LLQRFPISNKERSDMQPTNKNAVSVAAESDGSCERNRASGRIHNGIPMVPRRRNPSELDS
FRSALPVHERQDEIVQLIGGNRVVLVVGETGSGKTTQIPQFLLDECSRNGDPCRIFCTQP
RRLAAIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLTFCTSGVLLRTLMAGDASLT
TVTHVIVDEVHERDGLTDFLLTKMRDVLQKIPTLKLILSSAALDIDLFLKYFGSCPVIHL
VGRQFEVKEFFLEDILMLTDFNNKDMKKYKEETQRKEKKQKCLTEWCNAVEEEKLRSSVS
AAGLLQDGSALDTLAENEAEQLEPWLLKEMDSCISNIFLNEDQDVFIQLFNLILYESVSV
DYRHSDTGASPLMVAAARGFITQMEQLLSMGADINMKASNGWTALDFAKHFQQADAMDLL
KSSIPLGEGSSPDESALLQAEGADMSAEEQELLKLYHHSFDDEQVDMDLIMDLLHNICST
TSEGAVLVFLPGYDVIVSLRDRILYDDKRFSSHADRFQVFTLHSDMQTLDQKRAMKNSPP
GVRKIILSTNIAETSITINDVIFVIDSGKVKEKSFDTLSHVSMLKTVWISKASALQRKGR
AGRCRPGICFRLFSRLRFNNMLEFQVPQLLRMPLQELCLQTKLLAPSSCPVAEFLSKAPQ
PPAAHAIKNAVQMLKTIDAMDQSEDLTDLGYHLADLPVEPHLGKMVLCAVVLKCLDPILT
IACTLAYRDPFVLPAQASQKRAALHNRKCFTSTSFSDHMALLRAFQAWQKARSEGWERSF
CEKNFLSQATMDMILGMRTQLLGQLRAIGFVRARGGSDIRDVNLNSENWAVVKAALVAGM
YPNLVHIDQETSLFSSNREKKVHFHPTSILNQAQPKENGIAKPAQALPTDWLIYDEMSRG
HRMASVRCCSVMTSVTVAVFGGCAKLPSSALQEPAAQRATDGSGDASDSETEELSEMRID
DWLVFHLDKEAAGLVFELRQKWQNLFIKRIRCPSKPWSQQDEAIIRTLVSVLAAEEQAAG
LQQPTGIGQRPRPMSSEDGPQASMKSSRNGPQLPPSTTNDKPRSVPASWSLLQGKAPHRE
EASSTPLKPASEESSGSSSCSVSLDSPSFSPCSSSSGKQTTKPASPPQLLFSSVRYFIMK
SSNVRNIDISQQKGIWSTTPSNEAKLTKAFLENSAIILVFSVQGSGHFQGYARLTSVVSQ
ESGQDWGFMGLGGVFSVEWIHKESLHFQGSQHILNPWNENKKVQISRDGQELEPQAGSQL
LQLWDRASAVQ
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtgctggttcagcctcacacaaacccgccaggagccaacactcccggcaccat
ggctccgcctccaaaggcttcaaagacatccacatcgacgaggaagtcaagatctcgatg
aacctctcgctggagaggttccactacagtgaccagagagagatggagttcccctcctcg
ctgtccagcaccgagcgggctttcattcatcgcatggctcagtccctgggttacatttcc
aagagcaaagggaaaggaccgactcgcttcctcaccatcaagaagaagagcggcgccgac
aaaccccggcctaacatgccgctggcggtctcccacaactccttgtatttcatccgcagc
ctccttcagaggttccccatcagcaataaggaacgcagcgacatgcagcccaccaacaaa
aatgctgtgtctgttgctgcagaatctgacggcagctgtgagaggaacagagcgagcggc
cgcatacacaacggcatccccatggtgccgcgcaggaggaacccgtcggagctggacagc
ttccggagcgcgctgcccgtgcacgagcgccaggacgagatcgtccagctcatcggagga
aaccgggtcgtgttggtggtgggagagaccggctccggaaagacgacacagatcccgcag
ttcctgctggacgagtgcagcaggaacggagacccctgcaggatcttctgcactcagccc
agacggctggccgccatcgctgtggccgagagagtggcggcggagagaggagagagcgtg
ggccagaccgtcggttaccacatccggctggagagcagggtctcgcctaagacgctgctg
accttctgcaccagtggagtgctgctccgaactttgatggctggagacgccagcctgacg
acggtcacacatgtcattgtggacgaggtgcatgaacgtgacggtctgaccgacttcctg
ctcaccaagatgagggatgtgctgcagaagattcccacgctcaagctgatcctgtccagt
gcagctctggatatcgatctgttcctgaagtactttggctcctgccccgttatccacctc
gtaggaagacagttcgaggtgaaggaattctttctggaagacattctgatgctgacggac
ttcaacaacaaagacatgaagaaatacaaagaggagacccagagaaaggagaagaagcag
aagtgtctgacggagtggtgtaacgccgtggaggaggagaagctgaggagctctgtgtct
gcagcgggcctcctgcaggacggcagcgccctggacacgctggctgagaacgaggcggag
cagctggagccgtggctgctgaaggagatggactcgtgcatctccaacatcttcctcaac
gaagaccaggatgtgttcatccaactcttcaacctcatcctctacgagagcgtgagcgtg
gactacaggcatagcgacacgggggcgtcgcctctgatggtggctgcagctcgagggttc
atcacgcagatggagcagctgctcagcatgggggcggacatcaacatgaaggcatccaac
ggctggaccgctttagacttcgctaaacacttccagcaggccgacgcgatggacctactc
aagtcttccattcctctgggggaggggagcagcccggacgagtccgctctgctgcaggct
gagggtgccgacatgagtgctgaggagcaggagctgctcaaactctaccaccacagcttc
gatgacgagcaggtggacatggacctcatcatggacctgctgcacaacatctgctccacc
accagtgaaggtgccgtcctggtctttcttcctggatacgatgtgatcgtgtccctcagg
gaccgcatcctgtacgacgataagaggttctccagccacgctgacaggttccaggtgttc
acgctacattcagacatgcagactctggatcagaagagagccatgaagaactctccccct
ggggtcaggaaaataatcctttccaccaacatcgctgagacgagcatcacgatcaacgac
gtgatcttcgtcatcgactcggggaaggtcaaagagaagtcctttgataccctcagccat
gtgtccatgttgaagacggtgtggatctccaaggccagcgctttgcaacggaagggaaga
gccggccgctgcagacctgggatctgcttccgcctcttcagtcgactccggttcaacaac
atgctggagttccaggttccacagctgctgcggatgccgctgcaggaactgtgtctgcag
accaagctgctggctccctcctcgtgtccagtagctgagttcttgtccaaagctcctcag
cctccggctgcacacgccatcaagaacgctgtgcagatgctaaagacgatagacgctatg
gaccagtccgaggacctgaccgacctgggctaccacctggccgacctccccgtggagccc
cacctgggcaagatggtgctgtgcgccgtggtgctcaagtgcctggaccccatcctgacc
atcgcctgcacgctggcctaccgggaccccttcgtgctgccggcccaggcgtctcagaag
agagccgcgctgcacaaccgcaagtgcttcacctccacctcgttcagcgaccacatggcc
ctgctgagggccttccaggcgtggcagaaagcccgcagtgaaggctgggagaggtccttc
tgcgagaagaacttcctgtcgcaggccaccatggacatgatcctgggcatgaggacgcag
ctgctggggcagctccgagcaatcggcttcgtgcgagcccgtggaggcagcgacatccgg
gacgtgaacctgaactctgagaactgggccgtggtgaaggcggcgctggtggccggcatg
taccccaacctggtgcacatcgaccaggagacctcgctgttctccagcaaccgggagaag
aaggtccacttccaccccacctccatcctgaaccaggcccagccgaaggagaacggcatc
gctaagccggcccaggccctgcccaccgactggttgatctacgacgagatgagccgaggc
caccggatggcgagcgtccgctgctgctccgtgatgacctccgtcaccgtggccgtgttc
ggaggctgcgccaagctgcccagctccgccctgcaggaacccgctgcacagagagctaca
gacggctcgggggacgccagtgacagtgagacggaggagctgtctgagatgaggatcgat
gactggctcgtgttccacctggacaaggaggctgcaggtctggtgtttgaactcaggcag
aagtggcagaacctgttcatcaagaggatccgctgtccttcaaagccctggtcccaacaa
gatgaggccatcatccggaccctggtgtctgtgctggcggccgaggagcaggcagcgggc
ctgcagcagcccacggggatcggccagcggccccggcccatgtcctctgaggacgggccc
caggcttcaatgaagagctccaggaacggcccccagctgccccccagcaccaccaacgac
aagcctcgtagcgtgccggcctcctggagcctcctccaggggaaagccccgcacagagaa
gaggcctcctccacgcccctcaagccggcctctgaggagtcctccggcagctcctcctgc
tccgtgagcctggacagcccctccttcagcccctgctcctcctcctcggggaagcagacc
acaaagccagcgtctcctccccagctgctcttctcctccgtgcgctacttcatcatgaag
agcagcaacgtgaggaacatcgacatctctcagcagaaaggcatctggtccaccacgccc
agcaacgaggccaagctcaccaaggccttcctggagaacagcgccatcatcctggtcttc
tccgtccagggctcgggacacttccagggctacgcccgcttgacgtcggtggtcagccag
gagagcggccaggactggggcttcatggggctcgggggggtcttcagcgtggagtggatc
cacaaggagagcctccacttccagggctcccaacacatcctcaacccctggaacgagaac
aagaaggtccagatcagcagggacggacaggagttggagccccaggccggcagccagctg
ctgcagctgtgggacagagcctccgcggtccagtga
DBGET
integrated database retrieval system
