Pseudoliparis swirei (Mariana hadal snailfish): 130205912
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Entry
130205912 CDS
T09868
Symbol
arfgef1
Name
(RefSeq) brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1
KO
K18442
brefeldin A-inhibited guanine nucleotide-exchange protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
130205912 (arfgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130205912 (arfgef1)
Membrane trafficking [BR:
pswi04131
]
Endosome - Golgi transport
Arf GTPases and associated proteins
Arf GTPase associated proteins
130205912 (arfgef1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec7
BIG2_C
Sec7-like_HUS
DCB
Sec7-like_HDS
Motif
Other DBs
NCBI-GeneID:
130205912
NCBI-ProteinID:
XP_056289433
LinkDB
All DBs
Position
16:complement(10938749..10995120)
Genome browser
AA seq
1937 aa
AA seq
DB search
MLEGRKTKNMFLTRALEKILADKEVKKAHHSQLRKACEVALEEIKEESEKLSSSPPSEEG
KSGSSTLPPIKSKTNFIEADKYFLPFELACQSKCPRIVITSLDCLQKLIAYGHLTGSAPD
NTAPGKKLIDRIIETICACFQGPQTDEGVQLQIIKALLTAVTSQHIEIHEGTVLQAVRTC
YNIYLASKNLINQTTAKATLTQMLNVIFARMENQALTNHKLSWSLASRKRDRQLQEAKQL
ERERHRQHTEPDSPQLQAHIHPPVKGLSQEANGAVTSPTPSSTVPSTPSTPSTPAAEGRS
VSGEQDEQREQEEPGEQGPPNESPDPENGSNFCEAENEQTEADQATAAQNAAAQQHPEAV
EEEETPNYDEKAHEIVQSILQEVVNTVAGGHCLDPTKLCSDTKESGGEGEPTESDPAEAV
TEGTQSSLEDEGTVGSDSEHVHTNGIPGTPISASFTPSLPDDRLSLSSNDTQESGAAPGQ
PPGAKFSHILQKDAFLVFRSLCKLSMKPLSDGPPDPKSHELRSKVLSLQLLLSILQNAGP
VFKTNEMFINAIKQYLCVALSKNGVSSVPEVFELSLSIFLTLLSHFKTYLKMQIEVFFKE
IFLYILETSTSSYDHKWMVIQTLTRICADAQSVVDIYVNYDCDLNAANIFERLVNDLSKI
AQGRGGHELGTTTLQELTLRKKGLECLVSILKCMVEWSKDQYVNPNSQTSLGQEKLSEQE
STETKAPETINRYGSINSLDSTASSGIGSYSTQMSGTDNPEQFEVLKQQKEIIEQGIDLF
NKKPKKGIQYLQEQGMLGTTPEDLAQFLHQEERLDSTQVGEFLGDNDHFNKEVMYTYVDQ
MDFQGKDFVSALRTFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAY
SIIMLTTDLHSPQVKNKMTKGQYIKMNRGINDSKDLPEEYLSAIYNEIEGKKIAMKETKE
ITMKSNKQSVASEKQRRLLYNVEMEQMAKTAKALMEAVSHVQAPFTSATHLEHVRPMFKL
AWTPFLAAFSVGLQDCDDMEVASLCLEGIRCAIRIACIFCIQLERDAYVQALARFTLLTA
SSGISEMKQKNIDTIKTLITVAHTDGNYLGNSWHEIMKCISQLELAQLIGTGVKTRYISG
TVRGKEGFITSTKEQSNDEYLGLVGGTVDRKQIASIQESIGETSSQSVVVAVDRIFTGST
RLDGNAIVDFVRWLCAVSMDELASPTHPRMFSLQKIVEISYYNMGRIRLQWSRIWEVIGD
HFNKVGCNSNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTIR
DMVVRCISQMVNSQAANIRSGWKNIFSVFHLAASDQDESIVELAFQTTGHIVTNVFEKHF
AATIDSFQDAVKCLSEFACNASFPDTSMEAIRLIRHCAKYVSERPQAFKDYTSDDMNVAP
EDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEVMKTYGHTFEKHWWQDLFRIVFR
IFDNMKLPEQQTEKAEWMTTTCNHALYAICDVFTQYFESLNGILLDDILAQLYWCVQQDN
EQLARSGTNCLENVVNLNGEKFSLETWDKMCNCMLDIFKTTVPNALLTWKPAGAVGEHST
TQSLSDKQLDSISQKSVDIQSRCDDQHSISSADRVAMENRRQSQYSAASGMCEDGSRSRT
PIKVQEQRLFTALLIKCVVQLELIQTIDNIVFFPATSKKEDAENFAAAQRDASCTTSVSV
ETQDQGMYSHLTSEQLFKLLDCLLESHGFAKTFNSNNEQRTLLWKAGFKGKSKPNLLKQE
TSSLACGLRILFRMYIDESRQDVWEEVQRRLLGVCSEAVAYFLALTSESHREAWTSLLLL
FLTKVLKLSDERFKVHASRYYHLLCEIMQFDLIPELRAVLKKFFLRIGLVFHIAQLPGPQ
PAHIEQEADGEVVEEAE
NT seq
5814 nt
NT seq
+upstream
nt +downstream
nt
atgcttgagggcagaaagacgaaaaacatgttcctcacacgagctttggaaaagatcctg
gccgacaaggaggtgaagaaggctcaccattcgcaattgcgcaaagcctgcgaggtggca
cttgaggaaatcaaagaggaatcagaaaaattaagttctagtccgcccagtgaagaagga
aaatcgggttccagcacgttaccgccgatcaaatcaaagaccaacttcattgaggccgac
aagtacttcttgccatttgagctggcatgtcagtccaaatgtccccgcatcgtcatcacc
tcgctcgactgtttacagaagctgatagcgtacggccacctgacgggcagcgccccggac
aacacggccccgggcaagaagctcatcgaccggatcatcgagaccatctgcgcttgtttc
caagggccgcagacggatgagggcgtgcaactacagatcattaaggctctgttgacagcg
gtgacttcccagcacatagaaatccacgagggtactgtgctgcaggccgtccgcacgtgt
tacaacatctacctggccagcaagaacctcatcaaccagaccacggccaaggccacgctc
acgcagatgctcaacgtcatcttcgcgcgcatggagaatcaagcacttacaaatcacaag
ctatcttggtctctggcctccagaaagcgtgaccgccagctacaggaagcaaagcagctg
gagagagagcggcaccggcagcacactgagccggactccccccagctccaggcccacatc
cacccaccggtcaagggtctgtcccaagaggccaacggggccgtcacctctccaaccccg
agcagcaccgtcccatccaccccgtccaccccctcgacacccgccgcggagggcaggtct
gtgtctggggagcaggacgagcagagggagcaagaggagcctggagagcaggggcccccc
aacgagagcccagatccagaaaatggttcaaatttctgcgaggctgagaatgaacagact
gaggcagatcaagccacagcagcacagaatgcagcagcccagcagcatccagaggcagtt
gaggaggaggagacgccgaactacgacgaaaaagcccatgaaatcgtgcagagtattttg
caggaggtggtcaatactgttgcaggaggacactgcttggaccccacaaaactttgctct
gacaccaaggagtccggcggcgagggcgagccgacggagtcggacccggctgaagcggtg
accgagggcacccagagctccctggaggacgagggcactgtgggtagcgacagcgagcac
gtccacacaaacggcatccccggcacgcctatttctgccagcttcaccccctcactgccg
gatgacaggttgtccctctcgtccaatgacactcaggagtctggagcagcgccgggacag
ccgccgggggcaaaattctcccacatcctccagaaagatgcctttcttgtctttcgctca
ctctgcaagctgtcaatgaaaccgctgtccgacggaccaccggatcccaagtcccatgag
ctgcgatcgaaggtcttgtccctccagctgctgctgtccatcctgcagaacgccgggccc
gtcttcaagactaacgagatgttcatcaacgccatcaagcagtacctgtgcgtggccctg
tccaagaatggcgtctcctccgtgcccgaggtctttgagctctcgctctccattttcctc
actctgctctcccacttcaagacgtacctcaagatgcaaatcgaggtgttcttcaaggag
attttcctgtacattcttgagacgtccacaagctcctacgaccacaagtggatggttata
caaacgctcacgaggatatgtgcagatgcccagagtgtggtggacatctacgtgaactat
gattgtgacttaaatgctgcgaacatatttgagcggttggtcaatgacctctcaaaaata
gcgcagggtcgcggaggccatgagctcggcacaacaaccctacaggagctgaccctaaga
aagaaaggccttgaatgtctcgtgtccatcctgaaatgtatggtcgaatggagtaaagac
caatacgtcaaccccaactcccagaccagccttggccaagagaaactatcggaacaggag
agcaccgagaccaaggccccggaaaccatcaaccgctatgggagcattaactctctggac
tccacggcctcgtctggtatcggtagctacagcacccagatgtcaggtactgacaacccc
gagcagtttgaggtcctcaaacagcaaaaggagatcattgagcaaggcattgacctgttt
aacaagaaaccaaagaaaggaatccagtacctccaagagcaaggcatgctgggtacaacc
ccagaggatcttgctcagttcctgcaccaggaagagaggcttgattcgactcaggtggga
gaattcctcggagataatgatcatttcaataaagaggtgatgtacacctacgtggatcaa
atggacttccaaggcaaagactttgtttctgcgctgaggactttcttggagggctttcgg
ctccccggagaggcccagaagatcgaccggctcatggagaaatttgcagcgagatatctt
gaatgcaatcagggacaaaccctctttgccagtgcagatacggcatacgtcctggcctac
tcgatcattatgttgacaacagaccttcatagtccacaggtgaagaataaaatgacaaaa
gggcaatacatcaagatgaaccgcggcatcaacgacagcaaagatctacccgaggaatat
ctctcggccatttacaacgagatcgaaggaaaaaagattgccatgaaggagacgaaagag
atcaccatgaaatccaacaagcagagtgtggccagcgagaagcagaggcgtctgctgtac
aatgtggagatggagcaaatggccaagacggccaaggctctgatggaggccgtcagccac
gtccaagcacccttcaccagcgccacacatctggagcacgtcaggcccatgttcaagttg
gcatggacacccttcctggcagccttcagcgtaggtctccaggactgcgatgacatggag
gtggcttccctgtgtctggagggcatccgctgcgccatcaggatagcatgcatcttctgc
atacagttggagagggatgcctatgtccaggccttggcgaggttcaccctgctgacagcc
agttctgggatctcagaaatgaagcagaagaacattgacaccatcaagaccctcatcact
gtggcccacaccgatggcaactacctgggcaactcttggcacgagatcatgaagtgcatc
agtcagctggagctggctcagctaatcgggacaggagtgaagacacgctacatctcaggc
acggtgcggggcaaagagggtttcattacaagcaccaaggagcagagcaacgacgagtac
ctgggtctagttggagggacggtggaccgtaagcagattgccagcatccaggagtccatc
ggagagaccagctctcagagtgtggtggtggctgtggaccggatattcaccggttctacc
agactggatggtaatgcaatagttgattttgtgcgctggctgtgtgctgtgtccatggat
gagctggcctcgcccacacacccacgtatgttcagcctgcaaaagatagtggagatctcc
tactacaacatgggccgcatcaggctgcagtggtccaggatctgggaggttatcggagac
cactttaacaaggttggctgtaattccaatgaagacgtggcgatctttgccgtggactct
ctcaggcaactgtccatgaagtttctggagaagggggagctggctaacttcagattccag
aaagacttcctgaggccttttgagcacatcatgaagaagaacaggtctcccaccatcaga
gacatggtggtgcgctgcatatcccagatggtcaactcccaggcagcaaacatccgctca
ggctggaagaacatcttctctgtcttccacctggccgcttcggaccaggacgagagcatc
gtcgagctggccttccagaccaccggccacatcgtcacgaatgtatttgaaaaacacttt
gcggccacaatcgactccttccaggacgccgttaagtgtctgtcggagtttgcctgtaat
gcctcgttcccggacaccagcatggaagccatccgcctcatccgccactgcgccaaatac
gtctcagagaggccacaggccttcaaagactacaccagcgatgacatgaatgtggcgcct
gaggaccgcgtgtgggtccgggggtggttccccatcctcttcgagctctcctgcatcatc
aacaggtgtaagctggatgtccggaccagagggctcacagtgatgtttgaagtgatgaag
acctacgggcacacctttgagaaacactggtggcaagaccttttcagaattgtcttcagg
atctttgacaacatgaagctgccggagcaacagaccgagaaagccgagtggatgaccacc
acctgcaaccatgcactttatgccatctgtgatgtcttcacccaatactttgagtccctc
aatggcatcctgctggatgatattctggctcagctctactggtgtgtgcagcaagataat
gagcagcttgcccgttcaggcaccaactgtcttgagaacgtcgtcaacctgaatggagag
aaattctccctggagacctgggacaagatgtgcaactgcatgctggacatctttaagacc
accgtcccaaacgcgctgttaacatggaaaccagcaggagcagtgggagaacactcgaca
acacagagcctgtcagacaaacagctggactccatttcccagaagtcagtggatattcag
tcccgctgtgacgaccagcattccatcagcagtgctgatagggttgccatggagaaccgt
cggcagagtcagtacagcgcagcctcgggcatgtgtgaagacggctccaggagcaggacc
ccgataaaggtccaggagcagcgcttgttcacggcgttgctgataaagtgtgtcgtgcag
ctggagctgatccagactattgataacatcgtgttttttccggccaccagtaagaaggaa
gatgctgagaactttgctgcagctcagcgggatgcctcgtgtacaaccagcgtctcagtg
gagacccaggaccagggcatgtacagccacctgacctcagaacagctcttcaagctgctg
gactgcctgctggagtcgcacggcttcgccaagacgttcaactccaacaacgagcagcgg
accttactgtggaaagcaggtttcaaaggaaagtcgaagcccaacctgttgaagcaggag
accagcagcctggcgtgtggcctgcgcatcctgttccgtatgtacatagacgagagccgc
caggacgtctgggaggaggtccaaagacgactgcttggtgtgtgcagtgaggctgtggcg
tacttcttggctctgacctcagagagccaccgagaggcctggaccagcctgctgctgctc
ttcctcaccaaggtgctgaagctcagcgacgaacggttcaaggtgcacgcgtcccgatac
taccacctgctgtgtgagatcatgcagttcgacctgatccccgagctgcgggccgttctc
aaaaagttcttcctgcgcatcggcctcgtgtttcacatcgcacagctgcccgggcctcag
ccggcgcacattgagcaggaggcggacggcgaggttgtggaggaggccgagtga
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