Pseudoliparis swirei (Mariana hadal snailfish): 130205955
Help
Entry
130205955 CDS
T09868
Symbol
drosha
Name
(RefSeq) ribonuclease 3 isoform X1
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130205955 (drosha)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130205955 (drosha)
03009 Ribosome biogenesis [BR:
pswi03009
]
130205955 (drosha)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130205955 (drosha)
Enzymes [BR:
pswi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
130205955 (drosha)
Messenger RNA biogenesis [BR:
pswi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
130205955 (drosha)
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
90S particles
RNase
130205955 (drosha)
Prokaryotic type
rRNA processing factors
130205955 (drosha)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
130205955 (drosha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
Motif
Other DBs
NCBI-GeneID:
130205955
NCBI-ProteinID:
XP_056289531
LinkDB
All DBs
Position
16:3074591..3149384
Genome browser
AA seq
1360 aa
AA seq
DB search
MSFHQDRGGVPPGQQHGSQQQSYRPSNLRPPPPPPVSQYHYDPQAPPTPSYHGSSGYLPP
RSDFMRYPPPVPSPTPGSLSQCPVRPPFPKPPGRQGFLEPPPHFPPPPLPGSSGGPASGS
QASAQNAYHPYMMPPPPPMPHPSMPPPMASQPVSYHSPYSVNYPHPHPPFPPPTYSPGYA
QSAAPFKPDHGFRQAGQYKYEKPPPPTEGRRSPERGYRHDDHKQKGGYGGDRHKMEFPGE
RKDRGRSPPDKRGRPEAGRYRSDYDRGRSSPRLRSRDRSRERYRHRESRRSPSPDRHRKR
PRSRSSSRDRKRGRWEDDRDRRSESSSGPSSRERSHASGRSRNSEDAAAADRDRERERDR
EKEKEKDEEKEEDQQLKPAWIRCTHAENNYSNDPMDQVGDSTVVGTSKLRSLYERFEEEL
GRRQQRAKAVRPMWDPPKTKLDEDPCAQACKTNGSSSESDVESDGEGSSCSSSSDSDVFD
VIAEIKRKKAHPDRLHEELWYNDPGQMNDGPLCKCSSKARRTGIRHSIYPGEEPVKPCRP
MNNNSGKLFHYRITVSPPTNFLTERPTVIEYDDHEYLFEGFSLFSHKPLTNIPLCRVIRF
NIDYTIHFIEEMTPENYCVQGLELFASYLFQDVLELYDWNLTGPEFLPSGCQRFHFMPRF
VRFLPDGGKEVLSMHQVLLYLLRSSKPLVPEEEIADMLQWEELEWQKYAEECKGMIVTNP
GMKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLA
NSPKVKQMDKQKLTQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPV
LTHHIRYHQCLMHLDKLIGYVFKERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQP
KYGDRKVHHMYMRKKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLTSVHLY
YLFPGLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFE
ALIGAVYLEGGLTESRQLFGRLLFKTEGLQEVWLNYPPHPLQVQEPQTDRQLIETSPVLQ
KLTGFEDSIGTLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH
FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQDFAITNDKTKRPVALRTKTLADLLESFI
AALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYK
TLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIE
RKYRQELKEMRRERERQEKETDGPAGSDSRPIESRDSHVH
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccaccaggaccggggcggagtgcctccgggccagcagcacggctcccagcag
caaagctaccgccccagcaacctgaggccgccgccgccgccccccgtctcccagtaccac
tacgaccctcaggctcctcccactcccagctaccacggaagcagcggctacctgccgccg
cgctccgacttcatgcgctaccctccgccggtgccgtccccgacgcccggttctctcagc
cagtgcccggtgcggcccccgttccccaagccgccgggccggcagggcttcctggagccg
ccccctcacttccccccgccccccctccccggctcctcggggggtcccgcgtcggggtcc
caggcgtctgctcagaacgcctaccacccgtacatgatgcccccgccgccgccgatgccg
cacccgtccatgcccccccccatggcgtcgcagcccgtgagctaccactccccgtactcc
gtgaactacccccacccccaccctccgttccccccgcccacctacagccccggctacgcc
cagagcgccgccccgttcaagccggaccacggcttcaggcaagcgggccagtacaagtac
gagaagccccccccgcccacggagggcaggaggtctccggagagaggctatcgccacgac
gaccacaagcagaagggtggctacggcggcgacaggcacaaaatggagttccccggagag
aggaaggaccgcgggaggagccctccggacaagcgcggccggccggaggcggggcggtac
aggtccgactacgaccgggggcggagctccccccgactccggagccgggaccgcagcagg
gagcggtaccgccaccgggagagccggaggtcgccgtcgcccgaccggcaccggaagaga
ccacgaagccgctcctccagcagagacaggaagcgcggccgctgggaggacgaccgcgac
cggcggtcggagagctcctcgggcccgagcagccgggagcgcagccacgcctccggcagg
agccgcaactcggaggacgccgccgccgccgaccgggaccgggagagggagcgcgaccgg
gagaaggagaaggagaaagacgaggagaaggaggaagaccagcagctgaaacccgcctgg
atccgctgcacgcacgccgagaacaactactccaacgaccccatggaccaagtgggcgac
tccacggtggtgggcaccagcaagctgcgctcgctgtacgagcgcttcgaggaggagctg
gggaggcggcagcagcgggccaaggccgtccggcccatgtgggacccccccaagaccaag
ctggacgaggacccctgtgcccaggcctgcaagaccaacggcagcagcagtgagtctgac
gtggagtctgacggcgagggcagctcgtgctccagcagctccgactcggacgtgttcgac
gtcatcgccgagatcaagaggaagaaggctcaccccgaccggctgcacgaggagctgtgg
tacaacgacccgggccagatgaacgacgggcccctgtgtaagtgcagctccaaggccaga
cgcacggggatccgccacagcatctacccgggggaggagccggtgaagccgtgccgtccg
atgaacaacaactctgggaaactgttccactaccggatcaccgtgtccccgcccaccaac
ttcctgaccgaaaggccgacggtgatcgagtacgatgaccacgagtacctgttcgaaggc
ttctctcttttctcccacaagcctctcactaacatcccgttgtgccgcgtgatccgcttc
aacatcgattacaccatccacttcatcgaggagatgacgccggagaactattgcgtccag
ggtttggagctgtttgcctcgtacttgttccaggacgtcctcgagctgtacgactggaac
ctgacaggtccagagttcttgccctccggatgccagcggttccacttcatgccgcgcttc
gtccgcttcctcccggacggggggaaggaggtgctgtccatgcaccaggtgctgctctac
ctgctgcgcagcagcaagccgctggtgcccgaggaggagatcgccgacatgctgcagtgg
gaggagctggagtggcagaagtacgccgaggagtgcaagggcatgatcgtcaccaacccg
ggcatgaagccgagctcggtgcgcatcgaccagctggaccgggagcagttcaaccccgac
gtcatcaccttccccatcatcgtgcactttgggatccgcccggctcaactcagctacgca
ggagacccccagtaccagaagctgtggaagagctatgtgaaactgcgccacctgctggcc
aacagccccaaggtcaagcagatggacaagcagaagctgacgcagagagaggaagctctg
cagaagatccgtcagaagaacacgatgcggcgcgaggtgacggtggagctgagcagccag
ggcttctggaagaccggcatcaggtctgacgtctgtcagcacgccatgatgctgcccgtc
ctcacccatcacatccgctaccaccagtgtctgatgcacctggacaagctcatcggctac
gtcttcaaggagcgctgcctcctgcagctggccatgactcaccccagccaccacctcaac
ttcggcatgaaccccgaccacgcccgcaactcgctctccaactgcggcatccggcagccc
aagtacggcgaccggaaggtccaccacatgtacatgaggaagaagggcatcaacacgttg
atcaacatcatgtctcgcctgggccaggacgacccctccccctccaggatcaatcacaac
gagcggctggagttcctgggcgacgccgtcgttgagttcctcaccagcgtgcacctgtac
tacctgttccccggcctggaggagggcggcctcgccacctacagaacggccatcgtgcag
aaccagcacctggccatgctcgccaagaagctggagttggaccgcttcatgctctacgct
cacgggccggatctgtgccgggagtcggacctgcggcacgccatggccaactgcttcgag
gctctcattggcgccgtgtatctggaggggggcctcacggagtcccggcagctcttcgga
cgcctgctcttcaaaaccgagggcttacaggaggtctggctcaactaccccccccacccc
ctgcaggtccaggagccccagacggaccggcagctcatcgagacgtctccggtcctccag
aagctgacgggcttcgaggactccatcgggacgctcttcacacacgtgcgcctcctggcg
cgggccttcaccctgaggaccgtgggcttcaaccacctcacgctgggccacaaccagagg
atggagttcctgggcgactccatcatgcagctggtggccacggagtacctcttcatccac
ttccccgaccaccacgagggacacctcacgctcctgcgcagctcgctggtgaacaaccgc
acgcaggccaaggtggcggaggagctgggcatgcaggacttcgccatcaccaacgacaaa
accaagaggcccgtcgccctgcgcaccaagacgctggccgacctgctggagtctttcatc
gccgccctctacatcgacaaggacctggagtacgtgcacaccttcatgaacgtctgcttc
ttcccccggctgaaggagttcatcctgaaccaggactggaacgacccaaagtctcagctg
cagcagtgctgcctgaccctgaggacggagggcaaggagcccgacatccccctgtacaag
accctgcagaccgtggggccgtctcacgcccgcacctacaccgtggccgtgtacttcaag
ggggagcgcatcggctgtggcaaggggcccagcatccaacaggcggaaatgggagccgcg
atggacgcgctcgagaaatataacttcccgcagatggctcatcagaagcgcttcatcgag
cgtaaataccgacaggagctgaaggagatgaggcgggagcgcgagcgccaggagaaggag
accgacgggccggcaggaagcgacagccggccaatcgagagccgcgactcccacgtccac
tag
DBGET
integrated database retrieval system
