Pseudoliparis swirei (Mariana hadal snailfish): 130205956
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Entry
130205956 CDS
T09868
Symbol
si:ch211-230g15.5
Name
(RefSeq) polyhomeotic-like protein 1
KO
K11458
polyhomeotic-like protein 3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
130205956 (si:ch211-230g15.5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130205956 (si:ch211-230g15.5)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
130205956 (si:ch211-230g15.5)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
zf-FCS_1
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
130205956
NCBI-ProteinID:
XP_056289533
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Position
16:complement(2758326..2771602)
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AA seq
1245 aa
AA seq
DB search
MDREPVRQSQSERGEAANGSSAAAPDSTPTPPRLTPNPMLLDSPAPTLTPTTSSPPPPLT
PAPSVSAGHAPKAAAAAAALAPSPHILVPAPPKLTTTATAALRTYSRPILPSPPGAPKTS
PPKQTPPSLLLLPLSSSSSPVASSTTSPLLIHPPPPPPPSSSPATHSSAAGVSTKTSAGL
TNGNTRPVTMTTSTPITPFHTPASPPGRQVPQAHPAGTPGLVRANQSLSPVRQRVSQHTL
LLGKGLKGSGPDQVLLRAQMLILTSAMRPSLSSSSSSPSSSSPPSSNPASVTLQSLTLRP
PPPGALTIPPSLRLKPPPLSRPHAPLFPPLRPRPQPDAAAPECPNAPGRHLSVMPPTLYS
PVRAVPLRPRLHSPNGHNRAAAPRQTSPLQPIAAAARPQPPGPSGRPPPQTGQSQRGPPS
VAATPPSASSRFERSPSAARQLQIIALSSGRQPCTYGHAVRSASPVAEPSGQSKRTLSAG
VLPLPLSPSLTKNTSPPSLLSPSSPPSQPGPQTATRRGEPRDGEEQREKARGRGEASVGK
DPRGGRGDHREGRGDHREKREEKPPEGGLGGRRDQEVETAGEEEQMEVTEEGRGDGERGE
EKKMAEEETGETPMDQSENRTGQVLHQGQKMDLTSTPDAVKESGVEPKHVLGLIPVTAPV
PGTAPVPGTAPVTALIRVPVPVPVRAPARAPVTAPLPVPVPVTDPVTALVRALLPVPVTA
PVRASARAPVTAPLPVPVSVPVPVTAPLPVPAQVPVPALVRVPVPAPVPVTVPLPAPLPA
PVPAPVPALVRVPVPAPVPEVSLQSPRPPESHRDLQPVSQEDFCEDMSMQSDNQSALSSL
SSQSPPSSPFLTPSTENPPPLLPARTALGRSRRPAKAEAGLLGQSGDESESSDQSAGGPW
EPRAWPEGRQVLTHLVEGFVIQEGLQPFPVNRSSLLVQKQVTQPEEVNGTNGSSALPDML
PVAVLDALPDALPDALPDALPDALLDSTPDATPDATKQAMRSSESEAEGAGNTDNHGNRS
AHRDRTVLHCQFCGKRGHAHNFMRSKRFCSTSCARGFNVRLTKRLRALSASSRSDRPRPV
LNRAESVPGKPLLLRLSRDLWSAGRREKEAADEEEEDEDMEQDTEGGREEEEEDDGKEEE
DPAVAMTARMERRAARRAARRSSAPPLTTPTSTFKPGPSQWSVEDVTTFIHTLPGCGDVA
EAFRLQEIDGQALLLLTEDHLMTSMSIKLGPALKICAHINALKNQ
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggaccgggagccggttcgccagagccaatcggaacgcggcgaggccgccaacggaagc
agcgccgcggcgccggactcgacccccacccctcctcggctcacgcccaaccccatgctg
ctggactccccggcgcccacgctgacgcccaccacctcctcccctcctccccctctcacc
ccggcgccctccgtctccgccggccacgcccccaaagcggcggcggcggcggcggcgttg
gctccatctccccacatcctggtcccggctccacctaaactcaccaccactgcaaccgcc
gccctccgcacgtactcccgccccatcctcccctccccgccgggcgcccccaaaacatct
ccccccaaacaaaccccgccctctcttcttcttcttcccctttcctcctcttcctccccg
gttgcgtccagcaccacctcgcccctcctcatccatcctcctcctcctcctcctccttct
tcttctcctgcaacgcacagcagcgccgccggcgtgtcaaccaagacctccgccggcctg
accaatgggaacacgaggcccgtaaccatgacgacctccacaccaatcacgccctttcac
acgccggcgagcccacctggcagacaggtaccacaggctcatcctgcgggcacacctggt
cttgtgcgagccaatcagagcctgtctccggtgaggcagagggtatcccagcatacattg
ctcctggggaaaggtctcaaggggtctggtccagaccaggtgctgctgagagctcagatg
ctgattcttacgtctgccatgcgaccttccctgtcctcctcctcttcctccccctcttcc
tcctctcctccttcctctaaccctgcctctgtgacgctccagagtctcaccctgaggcct
cccccccccggggccctcaccatccctccctcccttcgcctcaagccgcctcccctctct
cgcccccacgcccccctcttcccccccctcaggccacgaccgcagcccgacgccgccgca
ccggagtgcccgaacgcgcccggacgccacctctccgtcatgcctccaactctttactct
ccggtccgagccgtccccctgaggccccgcctccattctccaaacggtcacaacagggcg
gcggcgccgcgccagacctcgcccctgcagccaatcgccgccgccgccaggccgcagccg
cccgggccgagcggtcgcccgccgcctcagacgggccaatcgcagcgcggcccgccgtcc
gtcgccgccacccccccgtcggcctcgtcccgcttcgagcgctcgccgtccgcggcgagg
cagctgcagatcatcgccctctcttcgggtcgccaaccctgcacgtacggccacgccgtg
cggtcggcgtcgcccgtcgccgagccgtccggccaatcgaagaggacgctgagcgccggc
gtgcttcctcttcctctcagcccgtcgttgacaaaaaacacctcgcctccgtccctcctg
agtccgtcgtcgcctccgagtcaacccggccctcagaccgcgacccggagaggagagccg
agggacggcgaggagcagcgggagaaggcgcgaggcagaggggaggcgagcgtcggtaag
gacccgaggggggggaggggcgaccacagggaggggaggggcgaccacagggagaagagg
gaggagaaaccgccggagggaggcctcggcggtcgcagggaccaggaagtggagacggcc
ggagaggaagagcagatggaggtgactgaggagggccggggtgacggagagagaggtgag
gagaaaaagatggcggaggaggagacgggagagacgcccatggaccagtctgagaaccgg
accggtcaggttctccaccagggacagaagatggatctgacctccacgcccgacgccgtt
aaagagtccggcgtggaaccgaaacacgtcctgggtctcattccagtaacagccccagta
ccaggtacagccccagtaccaggtacagcgcctgtaacagctctaataagagtcccagta
ccagtcccagtaagagccccagcaagagccccagtaacagccccgctaccggtaccagtc
ccggtaacagacccagtaacagctctcgtaagagccctactaccagtcccagtaacagcc
ccagtcagagcctcagcaagagccccagtaacagccccactaccagtaccagtctcagta
ccagtcccagtaacagccccactaccagtaccagctcaagtcccagtaccagctctagta
cgagtcccagtaccagctccagtcccagtaacagtcccactaccagccccactaccagcc
ccagtaccagccccagtaccagctctagtacgagtcccagtaccagctccagtcccggag
gtctctctccaaagtccaaggccaccagagtctcatcgggacctgcagccggtctcccag
gaggacttctgtgaggacatgtccatgcagtccgacaaccagtcagcgctgtccagcctc
tcctcccagtcccccccctcctcgcccttcctcaccccctcgacagaaaatcctcccccc
ctcctccccgctcggaccgccctcggcaggtcgcggcgcccggccaaagcagaggcgggg
cttctcggccagtcgggagacgagtccgagagctccgaccaatcggcgggcggtccctgg
gagccgagggcgtggcctgaggggcggcaggttctgactcacctggtggagggcttcgtc
atccaggaggggctgcaaccgtttcctgtgaaccgctcgtccctgctggttcagaagcag
gtgacccaaccggaggaggtgaacgggaccaatgggagctcagcgttgccggacatgttg
ccggtcgcggtactggacgcgttgccggacgcgttgccggacgcgttgccggacgcgttg
ccggacgcgttgctggactccacgccggacgccacgccggacgccacgaaacaagcgatg
cgctccagcgagtcggaggccgagggagccgggaacaccgataaccacggcaaccggtcg
gcgcaccgcgacaggaccgtgctgcactgccagttctgcgggaagcgaggccacgcccac
aacttcatgcggtccaagcgcttctgctccacttcctgtgcgcgcgggttcaacgttcgt
ctgacgaagcgtctgcgcgcgctgagtgcgagtagtcggtccgataggccacgcccagtc
ctgaacagggcggagtctgttcctgggaagcctcttctcctacgactgtctcgtgatctc
tggagcgccgggcggcgtgagaaggaggcggcagacgaggaggaggaggatgaagacatg
gagcaggacaccgagggaggaagagaggaggaggaggaagatgacgggaaggaggaggag
gaccctgccgtcgcgatgacggcccggatggagcgccgggcggcacggagggcggcgagg
aggtcgtccgcccccccactgaccacccccaccagcaccttcaaacccggcccctcccag
tggagcgtggaggacgtgacgaccttcattcacacgctgccaggctgcggcgacgtggcc
gaagcgttccggctgcaggagatcgatggccaagctctgctgctgctgacggaggaccac
ctgatgaccagcatgagcatcaaactgggtccggctctcaagatctgtgctcacatcaac
gcactgaagaaccagtga
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