Pseudoliparis swirei (Mariana hadal snailfish): 130205959
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Entry
130205959 CDS
T09868
Name
(RefSeq) cadherin-20-like
KO
K06807
cadherin 20, type 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130205959
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Major cadherins
130205959
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
130205959
NCBI-ProteinID:
XP_056289537
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Position
16:complement(2895481..2906769)
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AA seq
776 aa
AA seq
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MGGSVLPLVAVCVLALLPLGILGRSSARVKRGWVWNQFFVLEEYTGLDPLYIGKLHSDMD
EGDGSIRYILSGEGAGTTFTIDDGTGDIHAIQRLDRERKAQYVLRAQARSRRTDRPLEPE
SQFIVKIQDINDNEPRFPDGPYRASVPEMSSIGTSVIQLTAVDADDPSYGNSARVVYSIL
EGQPYFSVDAKTGVVRVSLADMDRETRENYTVAVQAKDMGGQLGGLAGTTTVNITLEDVN
DNPPTFDQRLYQMSIPEVAPVGSVVGRIWARDRDTGVNAEMEYSIIDGDGRDTFAIATDP
THMFGIITVKRPLDFENKPSYTLKVEGSNSQQAPPPRGPFQDVTIVHVSVEDVDEPPRFD
RPAYGAELPEDAEVGTVVRTVAARDPDAANHTVRYSIDRSSDPEAFFYMEITTGALITMR
SLDREEVGWHNITVLAMEMSNPTQISSALVAVRVLDVNDNPPSLTHQQEAYVCDSAKAGQ
LIQTVAAVDRDEPLAGQHFNFRLAPEAVNNPNFTLRDNQDNTAWILTRRGGWSQRDQTVF
YLPIFISDGEQPVHTSTSTVTIRVCSCDHDGNVMSCNAEAHSLPASLSRGALIAILACIF
VLLVMILLMLSLRTHRKKPFLCDEEENVNENIVRYDDEGGGEEDTEAFDIGAMWNPREAH
RHPHRPPGTARQDMLPEIESLSRYVPQARVAGGADSSVRGYVLAKLLDADAGASPFDSLQ
TYAYEGEGSVAESLSSLQSGASNTDHEYDYLNDWGPRFTKLAEMYGVLETNPAPVW
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgggaggctccgtgctccccctggtggccgtgtgcgtcttggccctcctgcccctcggc
attctgggtaggagctctgcgcgggtgaagaggggctgggtgtggaaccagttcttcgtc
ctggaggaatacacgggcctggacccgctgtacatcgggaagctccactcggacatggac
gaaggcgacggctccatccggtacatcctgagcggcgagggcgccggcaccaccttcacc
atcgacgacggcaccggggacatccacgccatccagcggctggaccgcgagcggaaggcg
cagtacgtgctgcgcgcccaggcccggagccgccgcaccgaccggccgctggagcccgag
tcccagttcatcgtcaagatccaggacatcaacgacaacgagccgcgcttccccgacggg
ccgtaccgggcctcggtgcctgagatgtccagcatcggaacctcagtgatccagctcacc
gcggtggatgctgatgacccgtcgtacggtaacagcgctcgtgttgtctacagcatcctg
gaggggcagccctacttctctgtggatgccaagaccggtgtggtccgcgtgtccctggcc
gacatggaccgggagaccagggagaactacacggtggcggtccaggccaaggacatgggg
ggccagctggggggtctggccgggaccaccacggtcaacatcacgctggaggacgtcaac
gacaacccgcccacgttcgaccagcggttgtaccagatgagcatccccgaggtggcgccc
gtgggctccgtggtgggccgcatctgggccagggaccgggacaccggggtcaacgccgag
atggagtacagcatcatcgacggagacggccgggacaccttcgccatcgccaccgacccc
acccacatgttcggcatcatcaccgtgaagaggccgctggactttgagaacaagcccagc
tacaccctgaaggtggagggctccaacagccagcaggctccgccccctcgcggccccttc
caggacgtgaccatcgtgcacgtgagcgtggaggacgtggacgagccgccgcgcttcgac
cggccggcgtacggcgccgagctgccggaggacgccgaggtcggcaccgtggtgaggacg
gtggcggcgagggaccccgacgccgccaaccacaccgtgaggtactccatcgacaggtcc
agcgaccccgaggcgttcttctacatggagatcaccaccggggctctgatcacgatgcgt
tcactggaccgggaggaggtgggctggcacaacatcaccgtcctcgccatggagatgagt
aaccccacgcagatctccagcgccctggtggccgtgagggtcctggacgtgaacgacaac
ccgccctcgctgacgcaccagcaggaggcgtacgtgtgcgacagcgccaaagcgggacag
ctgatccagacggtggcggcggtggatcgagacgagccgctcgccggacaacattttaac
ttccgtctggctccggaagccgtgaacaaccccaacttcaccctgagggacaaccaagac
aacacggcgtggatcctgacccggcgaggaggctggtcccagcgggaccagaccgtcttc
tacttgcccatcttcatctccgacggcgagcagccggtgcacaccagcaccagcacggtg
accatccgcgtgtgcagctgcgaccacgacggcaacgtcatgtcgtgcaacgccgaggcg
cacagcctgcccgccagcctcagccggggggcgctcatcgccatcctggcctgcatcttc
gtcctgctggtgatgatcctgctcatgctctccctgcgcacccaccgcaagaagcccttc
ctgtgcgacgaggaggagaacgtcaacgagaacatcgtgcgctacgacgacgagggcggc
ggcgaggaggacaccgaggccttcgacatcggcgccatgtggaacccgcgcgaggcgcac
cgccacccgcaccgccccccgggcacggcgaggcaggacatgctgccggagatcgagagc
ctgtcgcggtacgtgccccaggcgcgcgtcgcgggcggcgccgacagcagcgtgcgcggc
tacgtgctggcgaagctgctggacgcggacgccggcgcctcgccgttcgactcgctgcag
acgtacgcctacgagggcgagggctcggtggccgagtcgctcagctcgctgcagtcgggg
gcgtccaacacggaccacgagtacgactacctcaacgactgggggccgcgcttcacgaaa
ctggcggagatgtacggcgtgctggagacgaaccccgcccccgtgtggtag
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