Pseudoliparis swirei (Mariana hadal snailfish): 130206115
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Entry
130206115 CDS
T09868
Symbol
rttn
Name
(RefSeq) rotatin isoform X1
KO
K16484
rotatin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pswi03037
]
130206115 (rttn)
Cilium and associated proteins [BR:
pswi03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
130206115 (rttn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RTTN_N
TPR_Trm732_C
Motif
Other DBs
NCBI-GeneID:
130206115
NCBI-ProteinID:
XP_056289867
LinkDB
All DBs
Position
16:complement(11936650..11967304)
Genome browser
AA seq
2251 aa
AA seq
DB search
MELSPLIKKIGHSLLEIRARALKNIICKLDHSLITVSDIVQEKMLFVYLLEWFNFPEVPM
QQEVLELLSTLSQHPSAAQMLRDVGAVDFLTQLSPNVEPRLRAVIDGTLDQLFHLPELVP
HHIMAYTQGQRSTTPTDRVSAVAPTVVPPEDHFPKMGYFHKTMPSHMDVPAQKIAVRESV
RCLKFSVFPWLTLTNTDRHILSSNESSLRSSNANLVRTSCELLCDVIMQDFPAEIFLQRP
SIVQNLLSLLRLGSGKGEASYLHLQALSCLRQLCVGLKRRLRFHQDPSFFSTKQDPVSQN
SSFSYSQEVRGTQRSQASSPAAECSPRPTVVGRTGQRASGDGQDGDAASTSASSHRGGAS
VQAVGQTPQSPADVAHLEISDLGEEDVLELQLQQFTLAQFTIATMEHAIPLLKTEGSHAL
HCVLELLCDAVLLLGDSVGELVWDDRSLVGMELKEKLQACMELLGDILIYHQSYSTDIPH
SSQVHHRIAYTGIAVFTIKFLQTILPPEKASDNLPENTATAIFHLCLDTSLGSLLPSIQD
TAVAYLEQANSDSHDLYRRVNRAALWMESTCNFLKEAQAEGEKNWLELLELADQAIDGLP
FHQHLPIIKECVHICSYLWKFDQPSPFLQTESQKLLLKLLSYPSLPVKMETYKHILNLVK
DCLGIQNVSRQESSACGGINFLIHHRVLYEISAFGLQDSAEKVNVAAKDILLFLLKGQLM
MTASTWDRFNEALYPVMPILQGYANTEESLGNCVLLISDMSDVARDNVFPSTAKLKAALR
LLFTKQPTVRIAAVRHILPHLTSDDDAHTTRPELDQTVISSLPNLFCLRNTLDITLDTSS
KSVLKVESVEKLFCILSSDTVDISLRRSAAEQLSVVLQDTAMHPVLKNLGITDKVVYFIT
GSVNGNQSLDCLLEPCVCILRKMVYADPSLRHSLAHRNRLLLTLLRASLILKENKGNGSD
IAVLMTLLLFDEIASIEIWSNTSNADVSLTPFSLPLSVIRRYNIPFQAATHHAVSPYCCV
LPSSSDLLTLAPARLALQVAWNTAWHSGIDNLLEELHGVSTDVTEFHPDLKLSEAQVVLL
QAVHLPTALQGCIKAIVTAAGHSSVTSALSRLSLYLLIDQLALPHIPTHSSRNTLHSLSW
QAAVTRFLQVRPASVEDERLLVAIVAFLNSYFKPMHTDYTSDPEDKDLRWILELLLNQET
ASILNLLLGVETQASTQSTGGPEELKNHVSQRLQKELTSFFNILLLRLTQTTDRLCLALA
GPFKSQLAVRLLQSLRVSDAPRFYGLPSLERTLQGMVSLTAQPGWSSHDSDLEPIFLCSK
YLSGLLEVISSFYVEWGGNSMSFMGKGVTKNAVICLLHLSHEMIVENKDKDIISQWSLGN
EAAAEEACAAQLGLAWLVPLWVDRDQEVRFASLGLGAALSSVPSGCQALCASCQNISGGL
WGTLLNILLDQQESSMVRREAAFILQNLMVMPMPANTEEAKDSHWQHPCVHDEVSGVSLV
GLPALRALLYHCHYFQHVALFASKCYRGRYTFHLQPHTGATCGPHPQESSSLNSENSLWF
WRCDAPAPTTSSSRPSSSLSTSSTVIRGSGPHTPKGPSPLGGAEDSPANRLLTQGQSDTD
ASDSLTSQDSRQGDTSALEPVVMVTPDLMTAHCGLLANLLAILPDFTLTAIQHHQLLPAL
ASLLDIGPIEKCLTELKTPNILSGEREDIRIQFASLLQFLSSFSKLLRSCVMVRKELIGQ
MDFLKQLLTTLVAVLMLDAKGLDAGTRDVVCACWADVFMLLATLVRRDSSAAYPSVSAAL
GRRWRTFAGTLSVCVNEKFPDPLLHTVALQFLSTMFTVETKSLGVEVTTSDSKHAPALSD
IVIGPSASQLCELLLQSFEKRTLQDPLKKLTARALMALLACSPAAQNHAAKAGLIDSSVE
QMKQIYSQLLLESVQPGKASHRKKHQEEGYLKDVKLTVEILRNALYRSDECKVVATDARL
TLALYALWPWLLLDDPTMEAVLELLCVYTANCTTACSCVCGGGPTAAPGSKGGPSSSLMQ
SVMKLASGVAPDNGPVQKLSFRLLANLAMSRDCRCLLQKNNFLQAFLLVPRPKAGGVKAT
SVGGGLLGLWLRLLVSLSFAEDGQQSIFRVTGALELLADLAPHRHHALLTLHNLCFCPAN
KPHVIANDKAVKVFLCCLNSKEMETRSMGASALWALLHNNQRAKTTLKCPSVRLRLEEAR
SISKKDAEIKQDPLSAYLLKCLENLSQLLNN
NT seq
6756 nt
NT seq
+upstream
nt +downstream
nt
atggagttatctccgcttataaagaaaataggtcattctttgttggagataagagctcgc
gcattaaagaacatcatttgtaagctggaccactccctgattactgtctccgacattgtc
caggagaagatgctttttgtgtatctccttgagtggttcaatttccccgaggtgccaatg
cagcaggaggtcctcgagttgctatcaacgttgtcccagcatcctagtgcagcccagatg
ctaagagacgttggggcggtggacttcctcactcaactgtctcctaatgtggaacccaga
ctgcgagctgtcatagatggaaccctggaccagctgttccatctacctgagctagtccct
catcatataatggcctacacgcagggacagcgttctacaactccaacagatcgggtgtct
gcagtagcacctacagtcgttccacctgaagaccattttcctaaaatgggctatttccac
aagaccatgccaagccatatggatgtaccagctcagaagatagcagtacgcgagtctgtg
aggtgtctcaagttttctgtgtttccatggctgactttgacaaacacagacagacacata
ctttcatccaatgagagttctctaaggagcagtaacgccaacttggtgcgaacctcatgt
gaacttctgtgtgatgtcattatgcaagactttcctgctgaaatcttcctgcaaagaccg
agtattgtacagaaccttctttccctgttgaggctggggtcgggtaaaggcgaggcaagc
tacctccacttgcaggcgctttcctgcctgcggcagctttgtgtggggctgaagaggaga
ctacgctttcatcaggatccaagctttttctctacaaagcaagatcccgtgtcccagaac
tcgtccttctcctactcccaggaagtgcgtgggacccagcgttcccaggcctcatctccg
gcggcagagtgctctccacggcccactgtggtgggccgcacgggccagagggccagtgga
gatggccaagatggagatgcagcttccaccagtgccagctcgcacagagggggagcatca
gtccaggccgtcgggcagacgccccagtcacctgcagacgtggcccacttggaaatttct
gacctgggtgaagaagatgttctggagttgcagttacagcagttcactttggctcagttc
actattgccaccatggaacatgccatcccactgcttaaaacagagggttcgcatgcgctc
cattgtgttctggagctgctgtgtgacgccgtcctcctgcttggggacagtgtcggtgag
ctggtctgggacgatcgcagcctggtggggatggagctgaaggagaagctgcaagcctgc
atggaactattgggggatatcctcatctaccatcaaagctattcaacagatattccccac
agctctcaggttcatcacagaatagcctacacaggcattgctgtattcaccattaaattc
cttcagaccatcctccctcctgaaaaggctagtgacaatctcccggaaaacacagcaaca
gctattttccacctgtgcttggacacttcattgggaagtttattacccagcatacaagac
accgcggtggcctacttggagcaggcgaactccgacagccatgacctctacaggagggtg
aaccgtgctgctctttggatggaatccacttgtaactttctcaaggaagcacaagctgag
ggagaaaagaactggttggagttgctggagctggcagaccaagccatagacggcctcccg
tttcaccagcacttacccatcatcaaggaatgtgttcacatctgctcttacctgtggaag
tttgatcagcccagtccattcctccaaacagagagccagaaacttctcctcaagctgctg
tcctatccgtcactgcctgtcaagatggaaacatacaaacacattttaaacctggtcaag
gactgccttggcatccagaatgtgtcacgacaggaatcgtcagcctgcggtggaatcaac
ttccttatccaccacagggtactctatgaaataagtgcttttggactgcaggattctgca
gagaaggtcaacgtcgctgccaaggatatcctgctgttcctgctcaaaggacaattgatg
atgacagcatcaacctgggacagattcaatgaggcactttacccggtcatgcccatatta
cagggttatgccaatactgaagaatcactgggaaactgcgttctgctgataagtgatatg
tcggacgtggcaagagacaacgtgtttccaagcacagccaagctaaaagcagcgctccga
cttctttttaccaaacaacccactgtgagaattgcagcagtgcgacacatcctgccccac
ttaaccagcgacgatgatgctcacacaaccagaccagagctggatcaaacggtgatctcc
tcgctccccaacctcttctgcctcagaaacactttagacatcacactggacacgagcagc
aagtctgtcctcaaggtggagtcggtggagaagctgttttgtatcctgtcctcggacact
gttgacatctctctgagaagatcagctgcagagcagctatctgtagtgcttcaagacacg
gcaatgcacccagtgctgaagaatcttgggattacagacaaagtagtctatttcattaca
ggcagtgtaaatggcaaccagagcttagattgcctgctggagccgtgtgtatgtatcctg
aggaaaatggtgtatgctgatccatcgctgaggcacagtctggcacatcgcaaccgcctg
ctcctcacactgctcagggcatccttgatattaaaggagaacaagggcaatggaagtgac
atcgctgtcctgatgactttactgctatttgatgaaattgccagtattgaaatatggtca
aacacatccaacgcagatgtgagcctcacaccattctccctgccactctcggtgatacgc
aggtacaacatccctttccaggcagcgacgcatcacgctgtcagcccgtactgctgtgtc
ctgccctcgtcctctgacctcctgaccctggctcccgcccgccttgccctgcaggtggcc
tggaacactgcatggcattctgggatagacaacctccttgaagagctacatggcgtctct
accgatgttactgaatttcatcctgacttgaagctatcagaagcacaggttgtattgttg
caggcagtgcatcttcccactgcgctacagggctgcatcaaggccatcgtcacggcagca
ggacacagctcggtgacctccgccctctccagactgagcctctatttactgattgaccag
ctggccctccctcacatccccacccacagtagcagaaacacccttcactccctcagctgg
caggcagcagtgacgaggtttctccaggtgcgtccagccagcgttgaggatgagcggttg
ctcgtggccattgttgcttttctgaattcctacttcaaaccgatgcacacagattataca
tctgacccagaagacaaggacctgcgctggatactggagctgcttctcaaccaggagact
gcatccattcttaatttgctccttggtgtggagacccaggcctcgactcagagcacaggg
gggccggaggagctgaagaaccacgtgagccagaggctgcagaaagaactcaccagcttc
tttaacatcttgctgctccgacttacgcaaaccactgaccggctatgtctggcattagcc
ggccctttcaagagccagctggcagtccgtttgcttcagagcctgagggtctctgatgcc
ccccgtttctatggccttcccagcctggagagaacactgcagggcatggtcagtctgact
gcccagcctggctggagctcccacgactctgacctggagcccatcttcctctgctccaag
tatctcagtgggctattagaggtgatctcatcattttatgtagagtggggaggcaactcc
atgtctttcatggggaaaggtgtgaccaagaatgctgtcatctgcttgcttcacctgtcc
catgagatgatcgtcgagaacaaggacaaggacatcatttcccagtggtctttggggaac
gaggcagctgctgaggaggcctgtgccgctcagcttggtttggcctggctcgtcccgcta
tgggtcgaccgcgatcaagaggtgaggtttgccagtctgggtttaggtgcagctctgtcc
tctgtgcccagcgggtgccaggccctgtgtgccagctgtcagaacatcagcggaggtctg
tggggcacgttgctcaacatcctcctggatcagcaggagagcagcatggttcgcagagag
gctgcttttatcctgcagaacttgatggtgatgcccatgcctgccaacacagaggaggcc
aaggactcccactggcagcacccgtgtgtccatgatgaggtgtctggtgtgtctctggtg
ggtcttccagccctccgggctctgctttaccactgtcactacttccaacacgtggctctc
tttgcctccaaatgttaccgaggcaggtacactttccacctgcagcctcatactggcgct
acctgtgggcctcatcctcaggaaagcagttctctgaattctgagaactctctgtggttt
tggagatgtgacgcccctgcaccaactaccagctccagcagaccctccagctccctctcc
acatccagcaccgtgataagaggttcaggaccacacaccccgaagggtccctccccattg
ggcggtgctgaagattcccctgccaacagactgctgactcaaggccagagtgacacagac
gccagcgactcgctgacctcccaagactcgcgccagggcgacacctcagccctggaaccc
gttgtcatggtaactcctgacctcatgacagcccactgtggcctgctggctaacctgctg
gccatcttgccagacttcaccctcaccgccatccaacaccaccagctcctcccagcgctg
gccagtctgctggatatcgggcctattgagaaatgtctgactgagctgaagacacccaac
atcctatcaggggagagagaagacatcaggatccagtttgcctccctccttcaattcctg
tccagcttctctaaactgctgcggtcatgtgtcatggtgaggaaggagctgattggccag
atggacttcctgaaacagctgttgacgactttggtggcagtactcatgttggacgccaaa
ggattagatgcaggtacccgggacgtggtttgtgcgtgctgggcagacgtgtttatgctc
ctggctactctggtgaggagggacagctcggccgcgtacccatctgtctccgctgcgctg
gggagacgctggcggacatttgcaggaacattatcagtgtgtgtgaatgagaagttcccg
gaccctcttctccacacagtggctctgcagtttctcagtacaatgttcacagtggagaca
aagagtctgggagtagaggtcacgacctccgactctaaacatgctccggctttgtccgac
attgtgatcgggccctcggccagccagctgtgtgaactgttactgcagagttttgagaag
aggacccttcaggaccctttgaagaagctgacagccagagctctgatggcgctgttggcc
tgcagtcccgccgctcagaaccacgcagccaaagcgggtctcattgacagcagtgttgag
caaatgaagcaaatttactcccagctcctcctggagtccgtccaacccggaaaggcttcc
caccgcaagaagcatcaggaagaaggctatttaaaggatgtcaagctaactgtggagatc
ctgcggaatgctctttaccgcagcgatgaatgcaaagtggtggccacagatgctcgcctc
acacttgcactatatgctctctggccatggctactattggatgaccccaccatggaggcg
gtgctggagcttctgtgcgtctatacggccaactgcaccacagcatgcagttgtgtttgt
ggcggtggccctaccgcggccccaggatctaaaggcggccctagtagctctctgatgcag
tcggtcatgaagctggcctcgggggtcgccccggacaacggccccgtccagaagctctcc
ttccggctcttggcgaacctcgccatgtcccgcgactgtcgatgcctcctgcaaaagaat
aatttcctgcaggccttcctgttggtgccaaggcccaaggcgggtggtgtgaaggccacc
tcggttggggggggtctactgggcctgtggctgaggctgctggtcagcctctcattcgca
gaggacggccagcagagcatcttcagggtgaccggagccctggagctgctggcggacctg
gcgccacaccggcaccacgccctgctcacccttcacaacctctgcttctgcccggccaac
aagccgcacgtcatcgccaacgacaaagccgtgaaggtgttcctctgctgcctgaacagc
aaagagatggaaactcgctccatgggcgcatctgcactttgggcgttgctccataacaat
cagagggcaaagaccactttgaagtgtccctctgttcgattgagacttgaggaggcgcgt
tccatctccaagaaggacgcagagatcaagcaggatcctttgagcgcctacctgctgaag
tgccttgaaaacctctcccagctgctaaataactaa
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