Pseudoliparis swirei (Mariana hadal snailfish): 130206138
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Entry
130206138 CDS
T09868
Name
(RefSeq) oxygen-regulated protein 1-like
KO
K19538
retinitis pigmentosa 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pswi03037
]
130206138
04812 Cytoskeleton proteins [BR:
pswi04812
]
130206138
Cilium and associated proteins [BR:
pswi03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
130206138
Cytoskeleton proteins [BR:
pswi04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
130206138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCX
Motif
Other DBs
NCBI-GeneID:
130206138
NCBI-ProteinID:
XP_056289914
LinkDB
All DBs
Position
16:complement(7544535..7555532)
Genome browser
AA seq
2424 aa
AA seq
DB search
MRGFRRVLPEQSFGSVHTYGTTRHPSLIDPILSKRVCFYKSGDPQFNGLRMVINNRTFKT
FDTLLDSLSKKVPLAFGVRNITTPRGIHAVHTLDELEDGKSYICSDTRKVKPIDLAVARR
KLAPWYHARPVSSRRRTVQQARFFPGRNFHKEESMLVRTPKTLLVFRNGDPTVEHSVVLH
KRTTTTFESILEYISELMQFHVRRLHTADGRRVDGLPGLMLCSGTVVAVGREPFRHANYN
EQKPPAETTVPPKRLGHRRRKASKRKKKSQSYTPKSRNFSLSSERYIVNRIHNSIADNSC
DRPSVVLESGHILESVAETPDSCLGVGAEEQDRLLPTEDDIEKSFRVNQDGSMTVEMKVR
LTIKEEETIHWTTTLARSSVANQLHVTCLPEPVSEQEISSLKSTSLDLESPAASININKD
KTQDNNDEDPPSLGSGVFSGSIDEEDASKVQTNMGPPRSAPSPGHEPIRTKKASAESIQS
VTVEGIQEGVVGSYAYREQTENGAVTEQYCMVKQTCSRPVPKPTRHGSVDADNMDGVNVS
PFKSAGRTEIRRIESSREKVSETVLHVYEQGHFFANLCSEGVPAFGIPFGRPATSETGQL
SSDTEFEPQPWRPSTASESIRIWRTESTSETCDLTSSALRTAAFQANGKSKPQQREVNKD
KGVPSKPNVINKRVEKVKTISSAGFMKKSSRNKSKSAKSMMKLSKGLAQNGDRGVTTGSS
RQSDDTIKCIIKDSNVPSALKETTSEIVSFEECSLSVAPNEVSQPQGILTRQTSEQQEKK
KEKESYDVSESMSLPAFNSSSAVTNEYVGNWLEKARLNPSAYPNEESRNIDVLTLVQTES
GRCVESDKKKGLMLVADEAKCLEDTSGVRPLKVGPLPQDELGASVKQRIRSLENKSSSRP
MGRAVVNQQVFDSRTTTTNTKSDGNSAHTNTDTIKPLFCSESSTEISAGSEMEKKSSHMK
ILFKKETSLDSFPMDLPPPPPPVENTDIPNTGYSMTDASSVSVSSQTSDKQPLTISTKAD
KADHTLEMTTSIHTDTSTQSAAPLPRTPSIKRTPLVSNKSLDRKMSLRKACLDKYTSCSD
APSETSTSSAPINTVGGNVLPSGICSTGTQPPSESRREEARQSNSISDLTSRLSCCTSAS
PPSLTSEERMSSHSISSIEAPTPSDLPLQEIKNDETTCYSQKEALSTKPSVKNGKVMSSP
SPERKSQTKKFPSELPHNSPKVSSLHKHPAGVGLRRHATPNVSPSTERKLNRPTLQKRPS
PYSQSLDIASQHKSSGRLLSRNVSSDNASEPTHKTQSKTPSQRRRHQTPQSINSTDKLEK
TPAGNPLMPLDAEQSDDSRMTDDLEKSRTQRTPQPLHIANRPKMKAVLEKICYSIKSIRQ
ITQNKRLERSNSLPDFSSHVTSTFGSSSKALLAFLSVMTLKEGLADVNMNELNADGVSCV
EALKMIDSLRRIASIEDSHQLKASLSNLQQSASKQLLQSWKGFQNLGDQPKSRSSTSNNS
EQEVATEAGPEKDRGIDENVIDEIVDNLDIPERLKEALTSFSKDKSNRDGLEPKDNSNAK
GSPFSTEDAVNVRDVSQEENDKEFTDIKQPKQSSTGRITKDTEDEDCLYEPIGGYQRPPA
ETSDKQTPEEPELYSTGFFAKDNRDKSNPERTKRNRSVRSKKSLEQDSGSSEVEEQDMEG
HQLQIDSEESVSDNELTRDVESVSDERGQHTSSATKDLEQEVLCKLSASSSEAGEQHGSE
EEPEGECEEVQQESRGGGRPPNNDSHSEEKEDEQPKSNYYSEVNGRGKESILRQDSHRKS
SSEEEQPEVECQAACMGSNVSVDGSTCDSDVDDPSSEEEQEVECKTLKVIIEENVSDNEK
EEEEHRHNLPDPGKETRKYRGLKTLIEEEVSSEEKVHRADETYTCDTLGGDPSHFRENQS
SYTKKDESSLTYGFNADDNSGNDHSSCEEHAEMEQPTVTDKPINNSSSDDKESSSEEEHA
DMDTYTEESCTEYQEAPAQSQDTKCEKVVEKLKHQTGKIISQTIAERVILLEKQVADAQK
TTEGSAIRRFSQRDAPREPDAEDSPSESPTSQSAPATRSAPQSSLSFSYDSSGVITSEPE
GNTVRFIRDMFLAKSATDTQPRCFPSSNTFDTRTETSASGGYQSQTSSELSSSEDDSARK
SITKGFVRRTIESLYGRKDAKPDEEASERPPSAPKQKKKEHSSILFPFQTSRSKAMSELS
YFNSTNAADNPSEATRCVAFNARVGPEDRVSLDHEKRFLRENDVIRKSASDPVGINKTST
NVRGEATCEGTEESSPYSLLSSKSEQEDKMSLLSRKCTYFSLPHMSDSDSHQDDLNTVGK
SSAGGDGPADTRSRDERNDSQPGVGVTEFKMKANKVHPLMEPPPDGEVVVVQPEKGQGVM
SRRIQEPDMLDVLYNFCGQNCPIL
NT seq
7275 nt
NT seq
+upstream
nt +downstream
nt
atgagagggtttcggagggtcctccccgagcagtcatttgggagtgtgcacacctatggc
accactcgccacccgagcctcatcgaccccatcttatcgaagagggtctgcttctacaaa
agtggagatcctcagttcaacggcctgcgcatggtcatcaacaatcgcacctttaagaca
tttgacacacttctggacagtctctctaaaaaggttccccttgcgttcggggtgaggaac
atcaccactcccagggggattcacgcggtccacactttggatgaactggaggatggaaaa
tcctacatctgctcggacactcgtaaagtaaaacccatcgacctggctgtggccaggagg
aagctggcgccgtggtaccacgccaggcccgttagttcccgccgtcggaccgtacagcag
gccaggtttttccccggcaggaacttccacaaggaagagtcgatgcttgtgcgcacgcca
aagacgctgctggttttccgcaatggcgaccccactgtagaacactctgtggtgcttcac
aagaggactacaaccacctttgagtccatcctggaatatatttcagagctgatgcagttc
catgtgaggagattacacacagctgatggcagacgtgtggatggccttccaggcttgatg
ctgtgttcagggacagtagtggctgtcggcagggagccattcagacatgcaaactacaat
gaacagaaaccaccagccgaaaccacggtgcctcccaaacgattgggtcacaggagacga
aaggcttcaaaacgtaaaaaaaagtctcaatcatacactccaaagtcaagaaatttctcc
ttgtcatcggagaggtacatcgtgaaccggattcacaactccatcgcggacaattcatgc
gaccgtcccagtgtcgtgttggagtcaggtcacatactggagtctgtagcagaaacgcca
gacagctgcctgggcgtcggagctgaagagcaggaccgcctcctgcccacggaagacgac
attgagaagtcctttcgagtgaaccaagacggtagcatgacggtggagatgaaggtgcgg
ctgacaattaaggaagaggaaaccattcattggacgaccactctggcacgctcgagtgta
gccaatcagcttcatgtgacctgtttgccggagcctgtgtcggagcaggagatcagctcc
ctgaaatcaacctcactggatttagagagtcctgccgcctccatcaacatcaacaaggac
aaaactcaggataacaatgacgaggatccaccgtcgctgggcagcggagttttcagtggg
agtatcgatgaagaggatgctagcaaagtacagaccaacatggggcctcccaggagcgct
ccttcaccggggcacgagccaattagaacaaagaaagcctctgcagagagcatccaatca
gtgacggtggaggggatccaggaaggtgtggttggttcttacgcctacagagagcagacg
gagaatggagccgtgacagagcagtactgcatggtcaaacagacgtgcagcagaccagtg
cccaaacctacaagacatggctctgtggacgccgacaacatggacggcgtgaacgtatcc
ccgttcaaatcagcagggaggactgagatccgacggattgaatccagtagagagaaggtc
tctgaaactgtcttacacgtatatgaacagggtcatttcttcgctaacctttgttcagag
ggtgtgcctgcatttgggattccttttggcaggccggctacgtcggaaactggacagctc
tcctccgatactgagtttgaaccccagccttggagaccatcgacagcctccgagtcgatc
aggatctggaggaccgagagcacgtcagaaacatgtgatttgacctcgtctgcactgagg
acggctgcatttcaagctaacggcaaatccaagccccaacaaagagaggtcaacaaagac
aagggggtaccctcaaaacccaatgtgatcaacaaacgtgtagaaaaagtgaaaactatc
tccagtgctgggttcatgaagaagagttctaggaataaatcaaaatcagcaaaaagcatg
atgaagctaagcaagggactagcacaaaatggagacaggggtgttacaacagggagctcg
cgacagtcagatgacacgataaaatgtattatcaaagactcaaacgtgccatcagcattg
aaagaaaccacaagtgagatagtttcttttgaagaatgcagcctgagtgttgctcccaat
gaagtaagccaaccacagggaatactaacacggcagacatcagagcagcaggagaaaaag
aaagaaaaggagtcctatgatgtcagcgaaagcatgtcactgcctgcttttaactcctcc
agcgctgtcactaatgaatatgtgggaaactggctggagaaagcccgtctcaacccctca
gcctacccgaacgaggaaagtagaaacatagatgtactaactcttgtacaaacagagagc
ggcaggtgtgtggagtctgacaagaagaaaggtttgatgctcgtggcagatgaggcaaag
tgtttggaggacacatcgggagtacgccctctcaaagtcggcccgctgcctcaggatgag
ctcggagcttctgtcaaacaaagaatccggtccttagaaaacaaatcatcaagtcgacca
atggggagagccgtggtcaatcaacaagtattcgacagtcgtacaaccacgacaaacaca
aagagcgacggcaattcagctcacacgaacacagacacgattaaacctctcttctgttct
gagagctcaacagaaatttcagcaggcagtgaaatggaaaaaaaatcaagtcacatgaaa
atcttatttaaaaaagaaacctctctagattcatttccaatggacctaccaccaccacca
ccacctgttgaaaatacagatataccaaacacaggatattccatgacggatgcatcctca
gtgtcagtgagcagtcaaacatcagataaacagccattaaccatcagtaccaaagctgac
aaggccgaccacacactggaaatgacaacatcaattcacaccgacacgtccacgcagagc
gcagcgccattaccaagaactccatccattaaaaggaccccgctggtcagtaataaatct
cttgacaggaaaatgtctctcagaaaggcttgtctggataaatatacgtcatgtagtgat
gccccttccgagacaagcacatcatctgctcccatcaacacagtcggtggcaatgtgctg
ccaagcggcatctgttcaactgggacacaaccgcccagtgaaagccgacgcgaagaggca
cggcaatcaaacagcatctcagatttgacaagtcgtctgtcatgttgtacttctgcatct
cccccgagtttaacatctgaagagagaatgtcatcacacagtatttcatcaattgaggct
ccaacaccaagtgatcttccacttcaagagataaaaaacgatgaaaccacatgttatagt
caaaaagaagcgttgtcgactaaaccctcggtgaagaatggcaaagttatgagcagtcca
tctccagagagaaaatcccaaaccaagaaattcccttctgaacttccccataactctcct
aaagtatcatcattacataagcaccctgcaggtgttggattacgaagacatgcaacacca
aacgtgagcccctccactgagagaaagcttaacagacctacactgcaaaaaagaccgtct
ccatattctcagtctctggacattgcgtcacaacacaagtcgagtggaaggctgctctca
agaaacgtgtcctcggacaatgcatcagagccaacacataagacacaaagcaaaacgcca
tcccaacggaggcgtcaccaaacacctcagtccataaactcaacagataaactggaaaaa
acacctgctggtaaccctctcatgccactggatgctgagcagagtgatgacagcaggatg
acggatgacctcgagaaatccagaacacaaagaaccccacagccattacacatcgcaaat
cggcccaaaatgaaagcagtgcttgagaagatttgctactcaataaaatcaattcgacaa
atcacacaaaacaaacgtctggaaaggtccaacagcctgccggacttctcctctcatgtg
acctcaacgtttggctcctcatctaaagctctcctcgctttcttgtccgtcatgacccta
aaagaaggcctggccgacgtaaatatgaatgagctgaatgcagacggtgttagctgtgtc
gaagctttgaaaatgatcgattctctcagaagaatcgccagtattgaggattcccaccag
ttaaaagctagtttgtccaatttacagcagtcagcttcaaaacagctgctgcaaagttgg
aagggctttcagaatctcggcgaccaacccaagagtcgtagctcaacatcaaataattca
gagcaagaagtcgcgaccgaggccggccctgaaaaagaccgtggcatcgacgaaaatgtc
attgatgagattgtggataatcttgacatacccgagaggctcaaggaggcgttgacctct
ttttcaaaagacaaaagtaacagagacggcttggaaccaaaagataacagtaacgccaag
ggatcacctttctccacagaagatgctgttaatgtcagggatgtttctcaagaggagaac
gataaagaattcacagatattaagcagccaaaacaatccagcacgggtcgtataactaaa
gacactgaagacgaggactgcctgtatgagccgattggtgggtaccaacgtccaccagct
gaaacttctgataaacagacacctgaagaaccagagctttacagtacagggttctttgca
aaagataacagagataaatccaaccctgaaaggactaaaagaaatagatcagtcaggagt
aagaaaagtcttgaacaagacagtggttcctctgaggtagaggagcaagacatggaaggt
catcagctgcagatagacagcgaggagagcgtctctgacaatgagcttacccgggatgta
gagtcagtttcagacgagagagggcagcacacgtcaagtgccacaaaagatttagagcag
gaggtgctttgtaagctaagtgcatcgagctcagaagcaggtgagcaacatggttcagaa
gaggagccagaaggtgaatgtgaggaggtacaacaggagagcagaggaggtggacgcccg
cccaacaatgacagtcactctgaggagaaagaggacgagcaaccgaaatcaaattactac
tcagaagtgaatggaagagggaaggaaagcatattacgccaagatagtcacaggaagtct
tcgtcagaggaagagcaaccagaggttgaatgtcaagcggcctgtatggggtccaacgtg
agtgttgacggaagcacatgtgactcagatgttgatgatccatcttcagaggaagagcaa
gaggtggagtgtaagacactaaaggttattattgaggaaaatgtgtccgacaatgagaaa
gaggaggaagaacaccgtcataatcttccggatcccggaaaagaaacaagaaaatataga
ggattaaagactttgatagaagaggaggtcagctcagaggaaaaggtccatcgtgctgat
gaaacatacacttgtgatactttaggaggggatccaagccatttcagagaaaaccagtct
tcatataccaaaaaagacgaaagcagtttgacttatggatttaatgcagatgacaacagt
gggaatgaccacagcagctgtgaggaacacgcagagatggagcaaccaaccgttacagac
aaaccaatcaacaactcaagctccgacgacaaagagtccagttcagaggaagaacatgcc
gacatggacacgtatacagaagagagctgcacagaatatcaagaagctcctgcacagtct
caagataccaaatgtgaaaaggttgtagaaaagctcaagcatcaaactgggaagataata
tcccaaaccatcgcagagagagtgattcttctggaaaaacaagttgccgacgcccagaag
acaacagagggttcagcgatcagacgtttctcacaaagagatgcgccgcgtgagccggac
gcggaggactcgccctccgaatcgcccacatctcagtcggctcccgccacccgatcagct
cctcagtcgtcgttatcgttcagctacgactccagtggtgttataacatcggagcctgaa
ggcaacacggtcagattcattcgggacatgttcctggcaaagagtgccacagatacccag
cccagatgtttcccaagctcgaacacattcgataccagaacagagacctccgccagtggc
gggtaccagtctcagacttccagtgagctgtctagcagcgaagacgattcagcgcggaaa
tccatcaccaaaggcttcgtgagaagaacgattgaaagtctttacggcaggaaagatgcg
aaacctgacgaggaagccagtgaaaggccgccatcggcgccaaaacagaaaaagaaagaa
cattcaagcattctctttcccttccaaacgtcccggtccaaagcgatgtccgagttgtct
tacttcaattccactaacgccgcggacaacccgagcgaagcgacacgctgcgtcgctttt
aatgcacgagtcgggcccgaagacagagtctctcttgatcatgaaaaacggttccttaga
gaaaacgacgtgatcagaaagtcagcgtcagacccggtgggaataaacaaaacctccaca
aacgttcgaggcgaggcaacgtgcgagggcacagaggagagctccccgtattcccttctc
agctccaagtctgaacaggaagacaagatgtcgttactttccaggaagtgcacctacttt
tctttgccccatatgagcgactcggattcacatcaggatgacctgaacacagttggcaag
agcagcgccggtggggacggccccgcggacaccaggtcgcgggacgagaggaacgactcg
cagcccggtgttggcgtcacagagttcaagatgaaggctaacaaggtgcacccgctgatg
gagcctccacccgatggcgaggtcgtggtggtgcagccggagaaaggtcaaggcgttatg
agcagaaggattcaggagcccgacatgttggacgtgctttacaatttttgtggtcagaat
tgtcccatcctataa
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integrated database retrieval system
