Pseudoliparis swirei (Mariana hadal snailfish): 130206142
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Entry
130206142 CDS
T09868
Symbol
sox17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
130206142 (sox17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130206142 (sox17)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
130206142 (sox17)
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Gene cluster
GFIT
Motif
Pfam:
Sox17_18_mid
HMG_box
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
130206142
NCBI-ProteinID:
XP_056289920
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Position
16:complement(7574558..7576600)
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AA seq
387 aa
AA seq
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MSSPDAGYASDDQTQARCKMSVMMPGMGHCQWADPLSPLGDAKVKNEPCASGSGSQNRGK
TEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVTEKQPCVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLVPSMPGDGRGCVESLGLGYHEHGYQVP
PQPLSHYRDAQALGGPSYEAYSLPTPDTSPLDAVESDLMFFPSHSQEDCHMMPAYAYHSQ
AAEYQPQDHHGNAILHRHLASAPEQPHQSANLPPSYMGCPNPLAMYYTQHCSPSHPKRHP
GGAGQLSPPPDSHPHSADSVEQMHHSELLAEVDRSEFEQYLSSSSARADMAGAYGPHEAG
MQGPESLLSSVLSEASTAVYYCSYNNS
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtcccgatgcgggttacgccagcgacgatcagacccaggcaaggtgtaagatg
tcagtcatgatgcctggaatgggacactgccagtgggccgaccccctcagtcctctcggg
gacgccaaagtgaagaacgagccgtgcgcctccggctccggcagccagaatcgcggcaag
accgaaccgcggatccgccgacccatgaacgcgttcatggtctgggcgaaggatgagcgc
aagagactggcgcagcaaaacccggacctgcacaacgcggagctcagcaaaatgttgggg
aaatcatggaaagcccttcctgtcacagaaaagcagccctgtgtggaggaggccgagcgc
ctgcgggttcagcacatgcaggatcaccccaactacaagtaccggccccggcggcggaag
caggtgaagaggattaagaggctggactctggcttcctggtcccgtccatgcccggggat
ggcagagggtgcgtggagagtctgggcctcggctaccacgagcacggctaccaagttccc
ccgcagccgctcagccactaccgagacgctcaggctctcgggggcccctcttacgaagcc
tacagcctccctacgcctgacacctctcctctggacgctgtcgagtcagacctcatgttc
ttcccctcacattcacaagaggactgccacatgatgccggcgtacgcttaccactcccag
gcggcggagtaccagccccaggaccaccacggcaacgccatcctgcaccggcaccttgcc
tcagctccggagcagccccatcagtctgccaaccttcctccttcctacatgggatgcccc
aaccctctggccatgtattacacgcagcactgcagtcccagccaccccaagcggcatccc
ggtggggcgggacagctctccccgccaccggactcccacccgcactcggcagacagcgtg
gagcagatgcaccactctgagctgctggccgaggtggaccgcagcgagttcgagcagtat
ttgagctcctcttcggcgcgcgcggacatggcgggcgcgtacgggccacacgaggccggc
atgcaaggacccgaaagcctgttatcatcggtgctgtcagaggccagcacagctgtgtat
tactgtagctacaacaactcctaa
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