Pseudoliparis swirei (Mariana hadal snailfish): 130206266
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Entry
130206266 CDS
T09868
Symbol
arhgef4
Name
(RefSeq) uncharacterized protein arhgef4 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
130206266 (arhgef4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130206266 (arhgef4)
Membrane trafficking [BR:
pswi04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
130206266 (arhgef4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
SH3_1
PH
SH3_2
SH3_9
Motif
Other DBs
NCBI-GeneID:
130206266
NCBI-ProteinID:
XP_056290123
LinkDB
All DBs
Position
16:complement(24168382..24203647)
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AA seq
1872 aa
AA seq
DB search
MNESTDSESHTIRLNTTEVEIEKTDVEICNVQDPENLELLITYSVKENTSLHGCDSDRND
RKDHRRIINEDKVIQAKDKRDLYPSVRTHCNENHHKVVSTWKDNTFIADTHLIDLLNAQI
PASIGMREHLKSESNCTDPKLKTDIVVGSPNITKAHHANRNRDALDAVGILSHKLDISCS
QTLSQDGSNQGLTETLPQVSTIDRKPEGEERVSGVFFQEEQFGRVCTSSITFSTKTTDSF
PLGPCCTGLTVSPKGSTLSSPVRLSDSDREELTDGQPDQKRPQVARSQSWQVAALTHDIT
PTHLDQGGAVIRTPLNSMDMLLEGAQSGSVERGTDSTQIQSDSGDDSEERLLHHLKCSNN
LLVFSGKQKAEDTSTLLSESCIEERRREGSPCCSLFWQNKQQGVESSRVHHDQKSIQDSS
RENPDIAQKAISQKNKKTDVSKISSHCKQVQLVLKIPELPCGLNASLSNGTSDPSEDIDK
SQENSEGIPSTLNQQPNWISEDAESVPGKNLDSYSHLSLAHSHELEKLQRKNNNEDNNVV
ILKFKCSNSERNEGLQPFVLCSESRGLLMNSTFRKGLYCSQLGAHSLLNRRRRSLYKSLE
EYMAEECRVHTQVRLPAPQHEVRVVRYSDPDVSLNLLAVSSLEPILEAERSPEKHGTTED
VFKIEKQKEYDVIRPPERVVDLAFLSGDTSSPKRPHHLPEQEEASFELEPEANPSTPVLC
GSGKEYCSPMSVTYGAVPHTSAISNCNELQNPHFAIPARNADLENMTKRCKTKSNQTGIK
DSKMSVFAKMPYFRKAKSSKDSKGEEVPQESSDGGGEGLLSEQVAKKDNSDVESFLKKDI
LNQTVHQTFSSLDYKIEEEDYDLSSSTHVRQLVGQRSSGEDNEGQCPGNPFLKEVKSPDE
QTDKRSKSIDSLNICMRFAQAHKSLSSLFESRFMYKDNEERATKQSWRKTKKAPEAEPLK
RTLSAGEYTNSASGRGCREIPSSPRLGSSGLPSSLRALPHTDPIAKRGVPQGSSKENPHG
CKSEGQRRKCSPSQSTPLCASGLPPFLDDTAVPQPNHTSPVSPLRCHSLSTLSYPFSPTW
VKAHPAAREGLTKSPLRPMSPKPNSPMPAGQRTHFYYPLSPKACSVCPIVLGQSISMEGL
TEPPERPRTLKPSTSPLGLSPLEATEGSISYSHISLYAIGSINTLEGPQQRGRTVSLPGS
RRPLEDEGAASEGLGGPRTACWMDVAFDGIGQQRRRCFSDDVWFEEQKKNKRKLSRAIRG
SVGQLSTLTPETDAGVILGPVEAFQGRPLKAHCFSQSTPIGLDCPGWRRRVSYSSLVVPD
GASEKAGLAGELGSEEDLLYEEFRGSVHHFGNPGGGGGEQLAINELISDGSVVYAEALWD
HVTMDDQELGFKAGDVIEVVDATNKEWWWGRFMDSEGWFPASFVRLRVNQYEPMEEYLAH
LEEAEAGRENRAGLGPGLPCKEQMRTNVINEIMSTERDYIKHLKDICEGYIKQCRKRTDM
FTEEQLHTIFGNIEEIYRFQRKLLKGLEKKFNREQPYLSEIGCCFLEHQTDFQIYSEYCN
NHPNACVQLSKLVKVNKYVFFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKY
TNPQHRDYKDVEAALNAMKNVAKLINERKRRLENIDKIAQWQSSIEDWEGEDVLSRSSDL
IFSGELSKLSQPQAKSQQRMFFLFDHQMVYCKKDLLRRDMLYYKGRMDMDYMEVIDVEDG
KEKDFNISAKNALKLRAPAGDGVHLLFAKKPEQKQRWLRAFADERIQVQHDLETGFSLTE
LQKKQAMLNACKSHPAGKPKAVTRPYCDFLLRQKHPALPAAPPRQQVFMLAEPKRKTSTF
WHNIGRLTPFKK
NT seq
5619 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaatcgacagactcagaatctcacacaatacgtctaaataccaccgaggtcgag
atagagaagacagacgtagaaatatgtaacgttcaggacccagagaatcttgaattactc
ataacttactctgtaaaagaaaacacaagcttgcatggatgcgatagcgaccgtaatgat
cggaaagaccacaggcgtataatcaatgaagacaaagtcatacaggcgaaggacaaaagg
gacttgtacccaagtgtgaggacacattgtaatgaaaatcatcacaaagtagtgagtacc
tggaaagacaacacattcatagctgatacacatttaattgacctattaaatgcacaaata
cctgccagtattggaatgagagaacatttgaaatcggagtcaaattgcacagacccgaag
ttaaagacagatatcgttgtaggaagtccaaacatcacaaaggcacatcatgcaaataga
aacagagacgcactagatgcagtcggtatactgtcacacaagttggatattagctgttca
caaactctgagtcaagacggctccaaccaaggcctgacggagactctccctcaggtttct
actatagatagaaagcccgagggtgaggaacgggtgtcgggtgtcttcttccaggaggag
cagtttgggcgtgtttgtacttcctccattacattttccacaaagaccacagactctttt
ccattgggtccctgctgtaccgggctgactgtgagtccaaaggggtctacactatcctca
ccggtccggttgtctgactcagacagggaggagctcaccgacgggcaaccggatcaaaaa
cgacctcaggtagcaaggtcacaatcctggcaagttgcagctctgacccatgatataaca
cctactcacttagatcaggggggtgctgtgattagaacaccactcaattctatggatatg
cttttggagggggcccagtcaggttctgtagaacgaggaactgattcaactcaaatccag
tctgactctggtgatgattctgaggaacgtctgcttcatcacctcaaatgctcaaataat
ctgcttgttttttctggcaaacaaaaagcagaggatacatccactctattgtcagagagc
tgtatagaagagaggaggagggaagggtccccctgctgctctcttttttggcaaaacaag
cagcagggggtggagagtagtcgtgttcatcatgaccagaagtccattcaggacagtagc
agagaaaacccagacatagctcaaaaagccatttcccagaaaaacaaaaaaactgatgtc
agcaaaatttctagtcattgtaagcaagttcagctcgtactaaaaatccctgaactgcct
tgtggcctgaacgcctctttgtcaaatgggaccagtgacccctcggaagatatagataag
tcccaggaaaattcggaggggatcccgtctacactgaatcaacaacccaactggattagt
gaggacgctgaatccgttcctgggaaaaaccttgatagctacagccatttaagcctggct
cattcccatgagctcgaaaaactccagcgaaaaaacaataatgaggataacaacgtcgtg
attctaaagttcaagtgctctaattcagaaagaaatgagggccttcaacccttcgtgtta
tgttcagagagcagagggctattaatgaacagtaccttcagaaaaggactctattgtagc
caactaggggctcacagcttactgaacagaagaagacgcagcctatacaaatcacttgag
gaatatatggctgaggagtgtagagttcacacacaggtccgattgccagctccacagcac
gaggtgagggtagtaaggtactcagaccccgatgtcagcctcaacctgcttgctgtcagt
agtttagagccaattttggaggctgagcgttcaccagaaaagcatggcacaacagaggat
gttttcaaaatagaaaaacagaaagaatatgatgttataaggccccctgagagagttgtg
gatcttgctttcctttcaggggacacgtccagtcccaagagaccacaccacctgcctgag
caggaagaagcgtcttttgagttagaacccgaggcgaacccttcaacacctgttctatgt
ggtagtggaaaagagtactgtagtcctatgagtgttacctatggtgctgtgccacacacc
tcagctatcagcaactgcaatgagttacagaatcctcactttgctattccagccagaaat
gccgaccttgaaaatatgaccaagagatgcaaaacaaaaagcaaccagacaggaattaaa
gactctaagatgtctgtctttgctaaaatgccttattttaggaaagcaaagagctcaaag
gattccaaaggtgaggaggtaccccaggagtcatccgatgggggaggtgagggccttctg
tctgagcaagtggcaaagaaggacaactcagatgttgagtcttttctcaaaaaggacatc
ctcaaccaaacagtccaccaaacattttcctcattggattacaaaatagaagaagaagac
tacgacttatcctcctctactcatgtccgtcagctcgtcggccaaaggagtagtggggag
gataacgaagggcaatgcccagggaaccccttcctcaaggaagtcaagtcacctgatgaa
caaaccgacaagaggagcaagagcattgacagtttaaacatctgcatgcgctttgcacaa
gcacacaagtccctttccagcctgtttgagtcccgtttcatgtacaaggataacgaggag
cgggccaccaaacaatcctggaggaagacaaaaaaggctccggaggctgagccgctgaaa
agaactctttcagctggggaatatacaaactcagcttctgggcgtggctgtcgagagata
ccgtcttctccacgcctgggcagttcagggttaccgtcctccctcagagctcttccccac
actgatcccatcgccaagcggggagttccacaggggagtagcaaggaaaacccccatggg
tgtaaatctgagggccagagaagaaaatgttccccaagtcaatctaccccactctgtgcg
tctggcctacctccctttctagatgacaccgcagtcccacagcccaatcacaccagccct
gtttcacctttaagatgccactcactatccaccctttcttatccgttttcgccaacctgg
gtcaaggcacacccagcggccagggagggcttgacgaagagccccctacgaccaatgagc
cctaaacctaacagtccgatgccagccggtcagcgtacacatttttactaccctctctca
ccaaaggcctgttcagtctgtcctattgttctgggccagtcgatcagcatggagggatta
acagaaccccccgagagacccaggaccctaaaaccctcaactagccctctaggcctcagc
cctctggaagcaaccgaaggcagtatcagctactcacacatcagcctgtatgccattggc
tctatcaacacattagagggtccacagcagcgtggtcggactgtcagcctgcccggatca
agaaggccgttggaggatgagggggcggcctccgagggtctcggcgggccgaggaccgcc
tgctggatggatgtggccttcgatggcatcggtcagcagcgaagacgatgtttctcagat
gacgtctggtttgaagagcaaaagaaaaacaaacgcaaactgtccagagccatcaggggg
agcgtgggacaactcagcacactgacacctgagactgatgcaggagtcatcttggggccc
gttgaggcgttccaggggaggcccctcaaagcccactgcttctctcagagcacccccatt
ggtcttgactgcccgggctggagaagacgcgtctcctactcctcgctggtcgtccccgac
ggggcgtcagagaaggcggggcttgcgggcgagctgggcagcgaggaggatctgctctac
gaagagtttcgcggttccgtgcatcacttcgggaacccgggaggaggcggaggagagcag
ctggccatcaacgagctgatcagcgacggcagcgtggtgtacgccgaggccctctgggac
cacgtcaccatggacgaccaggagctgggcttcaaggccggtgacgtcatcgaagtagtg
gacgccaccaacaaggagtggtggtggggtcgcttcatggacagcgagggctggttcccc
gccagctttgtacggttgcgggtgaaccagtatgagcccatggaggagtatctggcccat
ctggaggaggctgaggctggaagggagaaccgggccggtctgggacctggtctaccctgc
aaagaacagatgaggaccaacgtcatcaacgagatcatgagcacggagagggactacatc
aagcacctgaaggacatctgcgagggttacatcaaacagtgccgcaagaggaccgacatg
ttcaccgaagagcagcttcacaccatctttggcaatattgaagagatctaccgattccag
aggaagttactgaaaggcctggagaagaaattcaaccgagagcagccttacctcagcgag
atcggctgctgcttcctcgaacaccaaacagatttccagatttattccgagtattgcaac
aaccaccccaacgcttgcgtccagctctctaaactggtgaaggtcaacaagtacgtgttc
ttcttcgaagcctgccgactcctccagaagatgatcgacatctccttggacggcttcctg
ctgactccagttcagaagatctgcaagtacccgctgcagctagccgagctgctgaaatac
accaacccacagcacagggactacaaagacgtggaggcggccttaaatgccatgaagaat
gtggcgaagctgatcaatgagaggaaacggcgtcttgagaacattgacaagattgcccaa
tggcagagctccatcgaggactgggagggagaagacgtccttagcagaagctctgatctg
atcttttcgggagagttgagcaagctgtcccagcctcaggccaagagccaacagagaatg
tttttcctcttcgatcaccagatggtttactgcaaaaaggacctcctgcggcgggacatg
ctgtactacaagggtcgcatggacatggattacatggaggtgatagacgtggaggatggc
aaagagaaggacttcaacatcagcgcgaaaaacgctctgaagcttcgggcgccggccggt
gacggagtccacctcctgtttgccaagaagccggagcagaaacaacgctggctgagagcc
ttcgccgacgagaggatccaggtccagcatgacctggagacaggattctctcttacagag
ctccaaaagaaacaggcgatgctaaatgcctgcaaaagccatccggctgggaaacccaaa
gcagtgacccgaccgtactgcgacttcctcctgcgccagaagcacccggccctccccgcc
gctccgccccggcagcaggtcttcatgctggccgagcccaagcgcaagacgtccaccttc
tggcacaacatcggccgattgacacccttcaagaagtga
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