Pseudoliparis swirei (Mariana hadal snailfish): 130206331
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Entry
130206331 CDS
T09868
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130206331 (trpc1)
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
130206331 (trpc1)
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
130206331
NCBI-ProteinID:
XP_056290222
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Position
16:complement(9063773..9079050)
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AA seq
796 aa
AA seq
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MHISVWPYSLSVVMAALYQGTDVSSPYTFLALKDVREVKEETTLDEKLFLLACEKGDYYM
VKKLLQENRHGELNLNCMDVLGRDVITITIENENLDILQLLLEHGCLATDALLVAIDSEV
VGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQD
ISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFELSA
DLKELSLVEVEFRNDYDDLAKQCKMFAKDLLAQARNSRELEVILNHTSNEDQVDKRGLLE
ERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGETASYRRKHTCLKMATVLSVAMLWP
LLSICYLLVPRSRVGQIIHTPFVKFIIHSASYFTFLLLLNLYSLVYNDGKKNTMGPALEM
IDYLLILWIIGMVWSDVKRLWYQGLEDFLDESRNQLSFVMNSLYLATFALKIVAHSKFKN
VEDTERKNWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGKF
LGLFLLVLFSFTIGLTQLYGKDQQDPDKNSAKDCEGIFCQQQSNDAFHTFMGTCYALFWY
IFSLAHVALFVTRISYTEELRSFVGAMIIGTYNIVVVIVLTKLLVAMLHKSFRQIANHED
KEWKFARAKLWLSYFNDKCTMPPPFNILPSPKTVCYLVISMSKWLCSHTSKGMVKRQNSL
REWKNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNEMRD
LLGFRTSKYAMFYQRS
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcagtgtttggccgtactcgctctctgtcgtaatggcagctctgtaccagggc
acggacgtttcctctccgtatacatttctggccttgaaagacgtgagagaggtgaaagag
gagacgacgctggacgagaagctcttcctgctggcatgcgagaaaggcgactactacatg
gtgaagaaactgctccaggagaaccgccacggcgagctcaacctcaactgcatggacgtg
ctgggccgggatgtcatcaccatcaccatcgagaatgagaatctagacatcctgcagctt
cttctggagcatggctgcctggcgacggacgccttgttggtggccatagactctgaggtg
gtgggagctgtggacatcctcctcaaccataggccgaggagatcctccaagccctccatt
gcaaaactgatgcagcgtattcagaacccagagtattcaaccaccatggacgtggctccg
gtcatcctggcggcccacaggaataactacgagatcctgactatgctgctgaagcaggac
atctcgctaccccggccgcacgctgtcggctgcgagtgcacgctctgcaacgctaaaaac
aaaaaggacagcttgcgacactccaggttccgcctggacatctaccgctgcctggccagc
ccctctctgatcatgctgactgaagaagatcccatacttagggcctttgagctgagtgca
gacctcaaggagctcagtctggttgaggtggagttcagaaatgattatgatgatctggcg
aagcagtgtaagatgtttgccaaggacctgctggctcaggctcgaaactctcgagagcta
gaagtgattctcaaccacacatccaacgaggatcaagttgacaagaggggtttgcttgag
gagcgaatgaacctcagtcgactcaagctcgccatcaagtacaaccaaaaagagtttgtg
gctcagtccaactgtcaacagtttctcaacaccgtctggtttggggagacggccagttat
cggcgcaagcacacctgtctaaagatggccacggtgctgagcgtggcgatgctctggcca
ctgctctctatctgctatcttctggtgccacgctcccgggtgggccagatcatccacacg
cccttcgtcaagttcatcatccacagcgcctcgtacttcactttcctgctgctgctaaac
ctgtactctctggtctacaatgacggcaagaaaaacaccatgggccctgcgctggagatg
atagattacctgctcatcctatggataatagggatggtgtggtcggatgtgaagcgactg
tggtaccaggggctggaagactttctggatgagtctcggaaccagctgagcttcgtcatg
aattccctttacctagccacctttgcccttaagatagttgctcatagcaagttcaagaac
gtggaggacacagagaggaagaactgggatgccttccatcccatcttggtggctgagggc
ctgtttgcctttgccaacgttctaagttacctgcgactcttcttcatgtacaccaccagc
tccatactgggaccgctacagatctccatgggtcagatgctgcaggagtttggaaagttt
ttaggcctcttcctgttggtgttattctccttcaccattggactcacccaactttacgga
aaggaccagcaagacccagacaagaattcagcaaaggactgcgagggcatattctgccag
caacagagcaatgatgcattccacacattcatggggacctgctacgccctgttctggtac
atcttctccctggcacacgtggcgctcttcgtcacccgcatcagctacacagaggagctg
cgctcttttgtgggtgccatgatcataggcacatacaacattgtggtggtcattgtgctg
accaagctgctggtggccatgctccataaaagcttcagacaaattgctaatcacgaggac
aaggagtggaagtttgctcgtgccaaactgtggctgagctactttaatgacaagtgtacc
atgcctccgccattcaacatcctcccctccccaaagactgtctgctacctggtgatcagc
atgagcaagtggctctgttcgcacacctcaaaaggcatggtgaagagacagaatagcctc
agggagtggaagaacctgaagcagaagcgagatgagaactatcagaagatcatgtgttgt
ctggttcaccgctacttgacctccacgcggcagaagatgcagagcacagaccaggccacg
gtggagaatctgaacgaccttcgccaggacctctcaaagtttcgcaacgaaatgagggac
ctgctgggcttcaggacctccaaatatgccatgttctaccaaaggagctaa
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