Pseudoliparis swirei (Mariana hadal snailfish): 130206363
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Entry
130206363 CDS
T09868
Symbol
rnf6
Name
(RefSeq) E3 ubiquitin-protein ligase RNF6
KO
K22753
E3 ubiquitin-protein ligase RNF6 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130206363 (rnf6)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130206363 (rnf6)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130206363 (rnf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
zf-RING_4
zf-RING-like
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
130206363
NCBI-ProteinID:
XP_056290271
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All DBs
Position
16:complement(10444234..10449899)
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AA seq
716 aa
AA seq
DB search
MDPPGGGDERQRQAERLHREEAYYHFINELNEEEYRLMRDGNLLGTPGEVTAEELRQRLD
GAKERMSSQPRTEQRAQTADSGEQQGSSGEGEERAAGGRRGAGAAEPGAEPSNGDSLLEW
LNTFRRTGNATRSGQSGNQTWRAVSRTNPNSGEFRFSLEININHDQPEPGEYNDTVVTAE
LPVAAQNITSPSIRTASTFPNPRPSTTPRPVPYPTPRPALSRRMQTRRARNSTTTLSMSP
PALHAPVASPRAVQRRSATLHSLAPPPTVPNPPIDQLTPSQHQGLNAEVEQSSDNMSASL
DCPCVSLQSRSQAPAVGHESRGRRTRSRGRPRRAIAGAGVSSRLSRHSRSPLHRIPVAST
ALPSSSGVGGSSSQTIEPGSGTGSVSMETVEAVAEPAALTELTVDAGERNGESHVVGAGS
AVVRRHPTIMLDLQVRRIRPGENRDRDSIASRTRSRARVAENTVTFESDSGGFRRTISRS
ERAGIRTYVSTIRIPLRRISETGLGEPNSTALRSILRQIMTGFGELSSLMETEADSESVA
PSHTDASVTNSSSSPASRLHTNETEAGQVGTGRVDQERVGGEEDQGGQARLGGSVVTTAE
GRATSRDTNNLVENGTLPILRLAHFFLLNDEEDDEHPRGLTKEQIDNLSTRTYGQASLEG
EIGRACSVCINEYAQGNKLRRLPCSHEFHIHCIDRWLSENNTCPICRQPILAVHQE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggaccctcctggtgggggagacgaacggcagaggcaggctgagcgtcttcatcgggag
gaggcttactatcacttcattaatgaattaaatgaagaggagtaccgcctaatgagagac
ggcaacctgcttggcacccctggggaggtgactgctgaggagctcaggcagcgtcttgat
ggagcaaaagagcgcatgtcttctcagccccgtactgagcagcgcgcgcaaaccgctgat
tctggagaacagcagggcagcagcggcgagggagaggagagagcggctggaggcagacga
ggagcaggggccgcagagccaggagccgaaccatctaatggtgactcattactggagtgg
ctgaacacttttagacgcactggcaatgctactcgcagtgggcaaagtggcaaccaaaca
tggcgtgctgtcagccggaccaaccctaacagtggagaattccgctttagccttgagatc
aacattaaccatgatcagccagagccgggggagtataatgacactgtggtcactgcagaa
ctgccagtggcggcccagaatataacttcaccctctatacgcactgcttccacatttccc
aaccctcgcccttcaaccacgccaaggccagtcccgtaccccacccctcgcccagccctc
agtaggaggatgcagacacggcgtgcacgcaacagcactaccactctttctatgagcccc
cctgcacttcatgcacccgtggcctccccacgtgctgttcagaggagaagtgccactttg
cactctttggcacctcctcctactgttcccaaccctcctattgatcaactgacaccgtcg
caacatcaaggcctgaatgccgaagtagagcagagcagtgataatatgtctgcttctcta
gactgtccctgtgtgtcactgcagtctaggtctcaggccccagcagtgggacatgaatcg
cgtggcaggaggactcgatcacgtggtcgtccacgcagggctattgcaggggccggggtt
tcatcccgcttatcaaggcacagccgttcccccttgcacagaatacctgttgccagtacc
gctctcccatcaagtagtggtgtcggtggctctagcagccaaactattgagccaggcagt
ggcacaggctctgtttccatggagacggtggaggctgtggcagaacctgcagctctgacg
gagctaactgtagacgcaggagaacgcaatggtgaatcgcatgtagtaggagcaggaagt
gcagtggtgcgacggcacccaaccatcatgttggacctgcaagtgagaagaatccgacct
ggtgaaaaccgggatcgggacagcatcgccagcagaacgcgttctcgtgcccgggttgca
gagaatacagtcacctttgaaagtgacagtggtggatttagacgcaccatctcccgctct
gagcgagctgggatccgcacctatgtgagcactattcggattccactgagacgcatcagt
gagacaggcctgggggagcccaactcaaccgccctgcgttccattttgcgccagatcatg
actggatttggggagctgagctccctaatggagacagaggctgattctgaatctgttgca
cctagccacacagatgctagtgttacaaatagtagcagcagcccagccagtcgtctgcat
acaaatgagaccgaagctggccaagttggtacaggtagggtagatcaagagagggtggga
ggggaggaggaccagggtgggcaggccaggctcggaggaagcgtagtgaccaccgcagaa
ggccgagccaccagcagagacaccaacaacctggtagaaaatggtactctacctatcctc
cggcttgcacacttcttcttactcaacgatgaggaggatgatgaacacccgaggggcctg
accaaagagcagattgacaatctatccacgcgcacctatggtcaagccagtctggagggg
gagataggtcgtgcatgcagtgtttgcatcaatgagtatgcccagggcaacaagttgcgc
cgcctgccctgctcccatgaatttcacatccactgcatcgaccgctggctctctgaaaac
aacacctgccccatctgcaggcagcccatactcgcagtgcatcaagaatga
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