Pseudoliparis swirei (Mariana hadal snailfish): 130206583
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Entry
130206583 CDS
T09868
Symbol
shha
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
130206583 (shha)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pswi01002
]
130206583 (shha)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130206583 (shha)
Peptidases and inhibitors [BR:
pswi01002
]
Cysteine peptidases
Family C46: hedgehog family
130206583 (shha)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Morphogens
130206583 (shha)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Vint
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
130206583
NCBI-ProteinID:
XP_056290603
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Position
16:8637836..8646207
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AA seq
414 aa
AA seq
DB search
MLLWTRIVLVGLVCLSLVASGMGCGPGRGYGRRRHPKKLTPLAYKQFIPNVAEKTLGASG
RYEGKITRNSERFKELTPNYNTDIIFKDEENTGADRLMTQRCKDKLNSLAISVMNQWPGV
KLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGFDWVYYESKAH
IHCSVKAENSVAAKSGGCFPGSSTVTLQDGTEKPVGLLQPGDRVLAADGEGNPVYTDFIM
FIDQDSATTRLFYVIETESGHTVTLTAAHLLFVGHNATKRAQQMSAVFASQVRSGQKVFV
FESERSRLEPVTVKRIYTQEHEGSFAPVTMQGTVVVDRVLASCYAVIEDHDLAHWALAPV
RLAHWVSSLLFPSQPRARAQSDGVHWYSKILYQLGTWLLDSHSIHPLGMSVSSS
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgctgctctggaccagaatcgtattggtgggtctcgtctgcttgtccttggtcgcctct
gggatgggatgcggaccgggcaggggctacggcaggagaagacacccgaagaagctgaca
cctcttgcgtacaagcagttcatccccaacgtggcggagaagaccctcggggcaagcggc
agatacgaaggcaagatcacgagaaactccgagcgatttaaagagctgactcccaattat
aacacagacatcatattcaaggacgaggagaacaccggtgccgaccggctaatgactcag
agatgtaaagacaagttgaactccctggccatctcggtgatgaatcagtggcccggggtg
aagctgcgggtcaccgagggatgggacgaagacggacaccacttcgaggagtcgctccac
tacgagggccgggccgtggacatcaccacctcggacagagacaagagcaagtacggcact
ctgtcccggctggcggtggaggccgggttcgactgggtctactacgaatccaaagcccac
atccactgctcggtgaaagcagaaaactccgtggcagcgaagtccggcggctgcttcccg
ggctcttccaccgtcaccctgcaggacggcaccgagaagccggtcggactcctccaaccg
ggagaccgggtcctggcagcagacggcgaggggaaccccgtgtacaccgacttcatcatg
ttcattgaccaagactccgcgaccacgaggctcttctacgtgatcgaaaccgagtcgggc
cacacggtcacactcaccgcggcgcacctcctcttcgtgggccacaacgccaccaaaagg
gcgcagcagatgtccgcggtgttcgccagccaagtgcgatctggacaaaaagtgttcgtg
ttcgagtccgagcgaagtcgactggagcccgtgaccgtaaaacggatttacacgcaagag
cacgagggctccttcgcgccggtaaccatgcaggggaccgtggtggtggaccgggtgctc
gcgtcctgttacgcggtgattgaagaccacgacctggcgcactgggccctggcacccgtc
aggctcgcccactgggtgtcctcgttgctgttcccttcccagcctcgtgcccgcgcgcag
agcgacggggtgcactggtactccaagatcctttatcaattaggaacatggctcctggac
agccactcgatccatccacttgggatgtccgtgtcctcaagttga
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