Pseudoliparis swirei (Mariana hadal snailfish): 130206720
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Entry
130206720 CDS
T09868
Symbol
nphp3
Name
(RefSeq) nephrocystin-3 isoform X1
KO
K19360
nephrocystin-3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pswi03037
]
130206720 (nphp3)
Cilium and associated proteins [BR:
pswi03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
130206720 (nphp3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_NPHP3
TPR_12
NPHP3
NPHP3_hel
TPR_10
TPR_1
TPR_7
TPR_8
TPR_2
TPR_MalT
TPR_16
NPHP3_N
TPR_19
AAA_16
TPR_11
NACHT
ATPase_2
AAA_22
TPR_6
KAP_NTPase
AAA_14
AAA
AAA_19
Macoilin
XRCC4_CC
DUF4635
Motif
Other DBs
NCBI-GeneID:
130206720
NCBI-ProteinID:
XP_056290794
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All DBs
Position
16:9015171..9024249
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AA seq
1303 aa
AA seq
DB search
MGTASSLVSPGEVIEDGYGGEGGEACEIPVEVKPKARLLRSSFRRGPRVIGASFKSTGSV
DLEYAAEYERLRKEYEIFRVSKNNEISSMQKKEAKLDEENKRLRAELQALQKTYQKILRE
KESALEAKYQAMERAATFEHDRDKVKRQFKIFRETKEKEIQDLLRAKRDLEAKLQQLQAQ
GIQVYDLNDSDSDDNQTAVTAAGTQCEYWSGGVLGSDPSMGSMMQLQQTFRGPEFAHSLI
DVEGPFANVSRDDWDAAVASLLQVSPHVPQALWSNTVRCYLISTQETKAELDVFIKKHSP
VLRRMCEALGHFYLNVCFPEENAAAYAVERTQEIERSSVCVLLVKSTVTSSVVEDCDEAF
VKNPDGHPLVLYLRTEEDHNLTGPTRQLLERINAADKAAKVKVVDHSGSAEEGAELIYFQ
VEKVIKQELLGLEGADVDSMDSVIEEGREEDSGDVLWDLHDEQEQIESYQQACSSSTTSQ
LGFQKYIDRLNDMIAAPPPTPPLLVSGGPGSGKSLLLSKWIEQQQKLSPNTLFLYHFVGR
PLSTSSEPVLIIKRLTVKLLQHFWSISGLSMEPSKILEEFPRWLERLSARHQGNIIIIID
SIDQIEQAERHMKWLIDPLPVNVRVVVSVKVETCPQAWRLWPTLHLDPLSPREVRSIVNA
ECQSMDLKLTKDQEKMLERHCRSASTCNALYVTLLARMLISSLSGWSLEKSLEECLLCQD
TMALYRLALKMTLTSLNTDREQHIMREMLCLACASHNGVSESEVLDLFPELELPVLSSLL
YRLNRLCIVTLRCGLITFQHLQAWEAVQLEFLGGGSSLAAYREKLLQYFSQQLSQDRVTW
RVADELPWLLQQQEDRTKLQLSLLNLFVSQNLYKRGHFSELLAYWQYVGKDKSSMATEYF
DSLKHYEKSCEGEDSMTKLANLYETLGRFLKDLGLPSQAVAPLQRSLEIRETALDPDHPS
VARSLHQLAGVYVQWKKYGNAEQLYRQALEISENAYGAEHASVARELESLAMLYQKQNKY
EQAEKLRKRSVKIRQKTARQKGHMYGFTLLRRRALQLEELTLGKESADSAKTLNELGVLY
YLQNNLDAAKIFLSRSLEMRQSVLGADHPDCAQSLNNLAALHTERREYEVAEDMYERALD
IRKTALSPDHPSLAYTLKHLAMLYKRRGKLEKAMPLYELSLEIREKSFGPKHPSVATALV
NLAVIYCQLKKHVEALPLYERALKVYEDSLGRSHPRVGETLKNLAVLSYEEGDFEKAAEL
YKRAMEIKEAEPSLVCGNAPSRHSSSGDTFSLRGPAPLPQAQR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccgcgtcctctttggtcagtccaggagaggtgatcgaggatggatatgggggt
gaaggaggagaagcctgtgagatcccagtggaggtcaagcccaaagcccgactcctgcgc
agttcctttcgcagaggaccccgggtgattggggccagtttcaaatccacaggttctgtg
gatctagagtacgccgctgagtatgaaagactccgaaaagagtacgaaatcttccgtgtc
agcaagaataacgagatctcgtccatgcaaaagaaggaggccaagctggatgaggagaac
aagaggctgagagctgagctacaggctctacagaagacctaccagaagatcctcagagaa
aaagagagtgcgcttgaggcaaagtatcaagcgatggagagagctgccacctttgaacac
gatagagacaaagtgaaacgacagttcaagattttccgggagacaaaagaaaaggaaatt
caggatctcctgcgggccaagagggacttggaggccaaactgcaacagttgcaggctcag
ggcatccaggtctatgacctcaatgattctgactcagatgacaaccaaaccgcggttact
gctgcagggacacagtgcgagtactggtctgggggtgtgctgggaagtgacccctccatg
gggagcatgatgcagttgcaacagacctttcgaggaccggagtttgcccacagtttgata
gatgtggagggaccctttgcaaatgtaagcagagatgactgggatgctgcagtggccagt
ctgcttcaggtctcccctcatgttccccaggccttgtggagtaacacagtgcgctgctac
cttatctctacccaggagaccaaagctgagctggatgtcttcattaagaaacattcaccc
gtgttgcggaggatgtgcgaagctctcggacatttctacctgaatgtctgcttcccagag
gagaacgctgccgcctatgctgtggagcgcacgcaggagattgaaaggagctcggtgtgt
gtgcttcttgtcaaatctactgtcactagctctgtggtggaggattgtgatgaggctttc
gtgaagaatccagatggccatccactggtgctctacctcaggactgaagaagatcacaac
ttaactggacccacaagacaactgctagaaagaatcaatgctgcagacaaggctgctaaa
gtcaaggtggtggatcatagtggttctgcagaggagggggctgaactcatttatttccaa
gtggagaaagtcatcaaacaggagttgctgggacttgaaggagcagatgttgattctatg
gactctgtgatagaggaggggcgtgaggaggactctggagatgtgctgtgggacctgcat
gatgagcaggaacagatcgagtcctaccagcaggcctgtagcagcagcaccacctcccag
ttgggcttccagaagtatatagatcgtttaaatgacatgatagctgctccacctcccacc
cctcctctgctggtgtctggtggtccaggctcaggaaagtctctcctgctctccaaatgg
atcgagcagcagcaaaagctgtcccccaacaccttgttcctttaccattttgtcggccgc
ccactttccacgagctcagagccggttctcattatcaaacgcctcactgtcaaactgctg
cagcacttctggtccatttctggcttgtcgatggagcccagtaagatcttagaggagttt
ccccgctggcttgaaagactttccgcacggcatcaaggaaacatcatcattatcatcgac
tccattgaccaaatagagcaagcagaaagacacatgaagtggctaatcgaccctctccct
gtcaatgtccgagtggtggtgtctgtcaaagttgagacttgtcctcaagcttggaggtta
tggcccacactccacttagacccactgagtcccagggaggtgaggagcattgtcaatgca
gagtgccagagcatggacctcaaattgaccaaggaccaggagaagatgctagaaaggcat
tgtcgttctgcatcgacctgcaatgcgttatatgtcacactactggcaagaatgctcatc
agcagtctgtccggttggtcactggagaagagcctggaggagtgtctcctgtgtcaggac
accatggcactctaccgcctggctctcaagatgactctgacctccctcaacacagacaga
gagcaacacatcatgagagagatgctgtgccttgcatgtgccagccataatggagtgagt
gaatcagaggtgctagaccttttcccagaactggagttgcctgtcctgtcctctctgctt
taccgcctgaacagactctgcattgtaaccctccgctgtggcctcatcacgtttcaacac
ctgcaggcttgggaagctgtacagttggagttcctgggtggaggaagtagcttggcagct
tacagagagaagctcctccagtacttcagccaacaactcagccaggaccgtgttacgtgg
cgtgtcgccgatgagctgccctggctgctccaacaacaggaggataggacgaaattacaa
cttagcctcctgaacctgtttgtttcccaaaacctctacaagagggggcatttctctgag
ctgctggcctattggcaatatgtgggcaaagacaaaagctccatggccactgagtacttt
gactccctgaaacactatgagaagagttgtgagggcgaagacagcatgaccaagctggcc
aacctgtacgagaccttggggcgtttcctcaaagacctgggcctcccgagccaggcagta
gcacctttacaaaggtcccttgagattagggagaccgccttggacccggaccatcccagc
gtagctcgctccctgcaccagcttgctggggtttatgttcagtggaagaagtacggcaac
gctgagcagctgtacaggcaggccctggagatcagtgagaacgcatacggagcggagcat
gccagcgtcgcacgagagctggagtcactcgccatgctctatcagaaacagaacaagtat
gaacaagcagagaaactcaggaaaaggtccgtgaagatccgtcagaagaccgctcgccag
aaaggtcatatgtacggcttcactttgttgagacggagagccctacagctggaagagctg
accctcggaaaagaatcggcagactctgccaagacactcaatgaactaggtgtcctgtac
tacctgcaaaacaacctggatgcagccaagatattcttgagccgctctctggagatgcgg
cagagtgtcctcggcgccgatcacccagactgcgctcagtccctcaacaacctggctgca
ctgcacacagagaggagggagtacgaggtggcggaggacatgtatgagcgggcgctggac
atccgcaagacggccttgtccccggaccacccctcactggcatacacactcaaacacctg
gccatgctctacaaacgcagagggaagctggaaaaggccatgccgctgtatgagctgtct
ctggaaatcagggaaaaaagctttgggccgaaacaccccagtgtggccacagcgctggtc
aacctggctgtgatctactgccaactcaagaagcacgttgaagccctgcccctttacgaa
cgagccctgaaggtgtatgaggatagtttgggccgctcgcaccctcgagtcggagagaca
ctcaaaaacttggctgtgctgagctacgaagagggggacttcgagaaggcagcagagctt
tacaaacgtgcaatggagataaaggaggccgagccgtcgctggtgtgcggtaacgctccg
tcccgccactcctccagtggggacacgttcagtctgaggggacctgctccactcccacaa
gcccagaggtga
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integrated database retrieval system
