Pseudoliparis swirei (Mariana hadal snailfish): 130206761
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Entry
130206761 CDS
T09868
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130206761 (col13a1)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130206761 (col13a1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130206761
NCBI-ProteinID:
XP_056290834
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Position
17:complement(3898069..3960026)
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AA seq
599 aa
AA seq
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MGIPGRMGLKGHTGKKGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKSGHNGPK
GDVGQRGIKGVLGEPGPKGEKGVGGDYSHRGLFVQDLPLKTLAALRSSQALMLKGGPGAQ
GPPGPPGPPGLPGTSGLNGASGPMGKPGEPGKPGKDPRLLPGLKGEPGVSGPKGDQGDAG
RLGPEGLTGVKGNQGIKGDEGKRGFPGKKGEKGGSGFPGASGFKGHAGLPGIPGIPGKRG
YRGERGELSIAAQRIKGEPGSPGMPGLMGIKGNTGSTGDKGEAGHEGPAGPRGPPGPTGE
PGKAEIHNNENDIRNIPLMGPPGLPGTSGTPGLHGTKGEVGLPGAPGLDGDKGPRGKPGE
YGPAGPIGPEGPRGESGVMGFSGTKGDKGPSGSPGLDGPTGEHGATGASGPIGLPGSMGP
KGEAGQGGRSEMIYGPPGPPGPSGPVGPAGSQGFSGPKGEPGIGIRGEKGASGHKGDKGD
RGHLGLPGAHGLDGRPGPVGLIGPAGVLGPAGPKGERYEKGDAGLPGPIGPQGIPGLFGP
QGLKGNRGERGKKGNRGTKGEKGDQGAPGLDAPCPLGDDGLPVPGCWNKGQHPFQLAKK
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggggattcctgggagaatgggcttaaaaggacacacagggaaaaagggagcaccaggc
gagccaggtctatctatcattggtccaagaggacctccgggacaacctgggacaagagga
tttccaggcttccccggtccaattgggttggatggcaagtctgggcacaacgggccgaag
ggagacgtgggccagcgtggtattaaaggagtcctcggggaacctggacccaaaggggag
aagggcgtaggcggagactactcacaccggggcctctttgtgcaggacctgcctctgaaa
accctggcggccttgcgctccagtcaggctctgatgttgaagggtgggcctggagcgcag
ggacccccgggacctccaggaccccccggactcccaggaacctcaggtctgaatggagcc
agtggcccaatgggtaagcccggtgaaccaggcaaaccaggaaaagacccgcggctttta
ccaggactaaagggggagccaggtgtgtcgggaccaaagggggatcaaggggatgctgga
cgactcggtcctgaaggcttaacgggagttaagggaaaccaaggaattaagggagatgaa
ggaaagaggggtttcccaggaaagaagggagagaagggagggtcgggtttcccgggcgct
tctgggttcaagggccacgctggcctccccggtatccctggcatcccaggcaagaggggc
tacaggggggagagaggagaactgagcatcgcagcccagagaattaaaggagaaccgggt
tcaccaggaatgccgggcctgatgggaatcaagggtaacacaggtagtacgggagacaag
ggggaagcaggccacgaaggcccagctggaccaagaggtcctccaggcccaactggggag
ccaggcaaggctgaaatccacaacaatgaaaatgatattcgcaacataccgctgatgggc
ccccctggattacctggaacttcagggacccctggactccatggtaccaagggtgaagtt
ggtctgcccggtgctcccggactggacggggataaggggcccaggggaaagcccggagag
tacggccctgcaggcccaatcggtcccgaaggtcccagaggggagagtggtgtcatgggc
ttctcaggaaccaaaggggacaagggtccgtctggatcacctggtttagatggccctacg
ggtgaacatggggctacaggggcctcgggccctattggattacctggctcaatgggtccg
aaaggtgaagctggacaaggaggaaggtcagaaatgatttatggacctccagggccccca
ggaccttcaggaccagttggcccagcaggatcgcaaggattttcagggcctaagggagaa
ccaggcatcggcatcagaggagaaaagggagcgtcgggtcacaagggcgacaagggcgac
agaggccatcttggactccctggggctcatgggttagacggcagaccgggtccagtgggt
ctaataggaccagcaggtgtgttagggccagcaggaccaaagggggagagatatgaaaag
ggagatgcaggattgccaggaccaatcgggcctcaaggcatccctggtttatttggacca
caaggactaaaaggaaaccggggagagaggggcaagaaaggcaacagggggaccaaaggg
gaaaagggagaccaaggagcacctggattagatgcaccctgtccgttgggagacgatggc
ttacctgttccaggctgttggaataaaggtcaacatccgttccaactggctaagaagtag
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