Pseudoliparis swirei (Mariana hadal snailfish): 130206814
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Entry
130206814 CDS
T09868
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03015
mRNA surveillance pathway
pswi04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130206814 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
130206814 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130206814 (sympk)
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130206814 (sympk)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130206814 (sympk)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
130206814 (sympk)
U7-dependent histone pre-mRNA processing factors
130206814 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
INTS1_R4
Adaptin_N
Cnd1
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
130206814
NCBI-ProteinID:
XP_056290962
LinkDB
All DBs
Position
2:complement(5185378..5204515)
Genome browser
AA seq
1218 aa
AA seq
DB search
MDSEDEGTQPRVVDMTTSERVVDLLNQAALIPTDEKLTVLKQVQELIINKDPSLLDNFLD
ELIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLLKDDSVNVVKKAILTLTQ
MYKVSLQWLVRSKAVSERQEACWDLVTQMKGDVLALLDSENDGVRTHAIKFTESLIVTLS
PRTSDSDVPKRQESDISLDKVPRDHSYIRYNVLCEEGKAALEKLLKFMVHPAITSINLTT
TLGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHPCSL
EFQGQIGTLLLDLGMAQSEITRSTPAPREQRKRPRHEEYTEGKKVKMEPALNEDDEDKEE
PALLLVPKPAAVPVAQSSIDLTAEFLHPLLSPDNVANLVLISMVYLPDVMPASFQATYTP
VESAGTDAQIKHLARLMATQMTAAGIGPGLEQCKAREDDAMKDEGNDEDSVAKDPFIKRK
AAMVGQAISVLGGYEKEKTPPPEAPAPVVKRLPEPIVPTGQTKMAGPSGRKKVFRLSDVV
QPFSEAEIEKLTSKAIRRILHAEKTIAQSGMAHIRVKLLSKLVTQFEGMMKEDVLEFILE
DIRARSDLAFSLLYQEYNTYLSHLPTGRLDSYDHCLYTLLSGLQEKPEQRDGLFTKLVLE
APLITESALDVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKEKVRT
TALAFLKRMYEKDHLRDYIEKFALNYMQLLVHPNPPSLLFGADKDTEVAAPWTEETVRQC
LFLYLSLLPLNHRMVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENCPK
GAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQALPKL
IKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKATNLCF
GEKNVYTSEVLAVVMQQLMEQSPLPILLMRTVIQSLTMYPRLGGFVMNILSRLIAKQVWK
YPKVWEGFVKCCQRTKPQSFSVLLQLPPAQLASVFERCPEMREPLLQHVLSFTLHQQAHI
PASLMVVLEAHKKPEPKPVEPVVEKEMDPVPAPVEDKAPTVTLEGPETPEQPQPAAVREE
EEPMEHEQPAPVMQEETVDTVSKEELTRAEEPQSSQPEPAEELMEESQPDPSDLQEPVEN
VEAGVKEPETGSGGEDVE
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggattcagaggatgagggaactcaaccccgtgtcgtcgacatgaccaccagtgaaagg
gtggtggatctgctgaaccaggccgccctgatacccacagatgaaaagttaactgtactc
aaacaggtccaggagctcatcattaacaaggatccctctcttctcgacaatttcttggat
gagttgatcgcctttcagactgacaagtcgatcgaagtgagaaaattcgtcattggcttc
atagaggaagcgtgtaaacgggacaatgagctccttctcagactgatcgccaatctgaac
atgctgctgaaggatgacagcgtgaacgtggtgaagaaagccatcctcacactcacacaa
atgtacaaagtttctctgcagtggttggtgcgctctaaagccgtatcggagaggcaagag
gcatgctgggatctggtcacgcagatgaaaggggatgtcctggccttgctggactctgaa
aacgacggcgtgcgcactcacgccatcaagttcacggagtcgctaatcgtcactctgtcc
ccgcggacgtcggactctgacgttcccaagcgacaggagagcgacatcagcctggacaaa
gttccccgagatcactcgtacattcgctacaatgtcttgtgtgaggagggtaaagcagca
ctggagaagctgctgaagttcatggtccatccggccattaccagcatcaacctcaccaca
acactgggctccctggccaccatcgcccgtcagaggcccatgttcatgtccgaggtggtg
caggcctatgagacgttgcatgcaaacctgccacccactctggccaagtctcaggtcagc
agcgtgcgaaagaatctgaagctgcacttggtggcggtcctcaagcatccctgcagcctg
gagttccagggtcagatcggcaccctgctgctggacctgggcatggcccagagtgagatc
acgcgctcgactcctgcgccgcgggagcagcgcaaaaggcctcggcatgaagaatacacc
gaagggaaaaaggtcaagatggagccggccctgaatgaggacgacgaggacaaggaggag
cccgccctgctcctggtccctaaaccggctgctgttcctgtagcgcagtcgtccatcgac
ctcacggcggagttcctgcacccactgctctcccctgacaacgtggccaacctggtgctc
atcagcatggtgtatctacccgatgttatgccggcatccttccaggccacatacacaccg
gtcgagtcagctggcactgatgcccaaattaaacatctggcccggttgatggccacgcag
atgactgcagcggggatcggtccaggacttgagcagtgcaaagccagagaagacgatgcg
atgaaggacgaaggcaacgacgaggactctgttgccaaagacccgttcatcaagcgcaaa
gctgcgatggtgggacaagccatttctgtgctgggcggttacgaaaaagagaagactccg
cccccagaggctcccgccccagtggtcaagaggctccccgagcccatcgttcccacggga
cagaccaaaatggccgggccgagcgggagaaaaaaagtgttccggttgtccgacgtggtc
cagcctttctcagaggccgagatcgaaaagctcacctccaaagccatccgacgcattctg
catgcggagaagacgattgctcaaagcggcatggcccacatccgagtgaagctgctctcc
aagctcgtgacgcagttcgaagggatgatgaaagaagacgtgctggagttcattctggag
gacatcagggcgaggagcgacctggccttttctctgctctaccaggagtacaacacttac
ctcagccacctgccgaccgggcggctggacagctacgaccactgtctgtacacgctgctg
tcgggcctgcaggagaaacccgagcagagggacggactgttcaccaagctggtcctggag
gctcccctgataacggagtcggcattggatgtaatccggcgctactgcgaggacgagtct
cgagtgtatctgggcatgacgactctgaaggagctcatcgtcaagcggccctccaggcag
ttccagtatctgcatgtgctcctggatctcagctcccatgaaaaagagaaggtgcggacc
actgccttggccttcctcaagcgcatgtatgagaaagaccatctcagggactacattgag
aagtttgccctgaactacatgcagcttctggtccaccccaaccctccatctctgctcttt
ggggccgacaaagatacagaggtggccgccccatggactgaagagacggtgagacagtgt
ctgttcctctacctgtccctgctgccgctgaaccaccgcatggtccacgagctggcgtca
gtctacaccgaggccatcgccgacatcaagcgcagcgtgcttcgagcgatagagcagccc
atccgtggaatggggatgaactcacctgagctgctgctcttggttgaaaactgtcctaaa
ggggcggagactttagttacccgctgtctgcacatattgacagataaagtgcctccatct
ccagagctggtggagagagtgcgagacctttaccacaaacgagttccagacgttcgcttc
ctcattcccgtcatcaatggccttgaaaagaacgaagtgatccaggctctccccaagctg
atcaaactgaaccccatcgtggtgaaggaggtgttcaaccgcctcttgggcactcagcac
agtgagggaagttcctccgtgtcccctctcacccctggagacctgctgatcgccttacac
aacatagactccaccaagtgtgatatgaagtccatcataaaagccaccaacctgtgcttt
ggggagaaaaacgtgtacacgtccgaggtgttggcggtggtgatgcagcagctgatggag
cagagccccctccccatactgctcatgcgcaccgtcatccagtccctcaccatgtaccct
cgactgggcggcttcgtcatgaacatcctgtcccgcctcatcgccaagcaggtgtggaag
tatcccaaggtgtgggaggggtttgtgaagtgctgccagaggacgaagcctcagtccttc
agcgtgctgctgcagctgccgcccgctcagctggcgagcgtgttcgagcgctgcccggag
atgagggagcctcttctgcagcacgtcctctccttcacgcttcatcagcaagctcacata
cctgcctccctcatggtggtcctggaagcacacaagaagccggaaccaaaacctgtagag
cccgtcgtggagaaagagatggacccggttcccgccccagttgaagataaggctcccact
gtgacactggaagggccagagacgccagagcagccgcaaccagctgccgtgagagaggag
gaagaaccaatggagcacgagcagcccgctccagtgatgcaggaggaaactgttgatact
gtttccaaggaggagttgacaagagcagaggagccacaatcctctcaaccggagccggct
gaggaactgatggaggagtctcagcctgacccctcagacctccaggagcctgtagaaaat
gtggaagctggcgtcaaagaacctgagactggaagcggtggcgaggatgtagaatga
DBGET
integrated database retrieval system
