Pseudoliparis swirei (Mariana hadal snailfish): 130206876
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Entry
130206876 CDS
T09868
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130206876 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130206876 (msh6)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130206876 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Amido_AtzD_TrzD
Motif
Other DBs
NCBI-GeneID:
130206876
NCBI-ProteinID:
XP_056291078
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All DBs
Position
17:9685966..9693581
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AA seq
1379 aa
AA seq
DB search
MSKQSSIFNFFTKSPPPVSKSKPKPSPSPAEADLPSSVRKSSSSPKEEAKRTPQKPAKTS
KGKPTSNGKSSKGGFSTLFGDKAPAAEQRSSTCPFTAGAPVWAKLEGHPWWPCLVVPQPL
TGQQMRGNDRKQRIHVHFFDEPPTRGWVSTKYIRDYQGSDSSDAKTGGVFFSGKPAVRRA
MALADGVMFDSPEKRLKMPVCMEPSDDDDDEEEEDMELDKSTVTDEEDSDEEEQKQEKVK
SSKVSLRSSRASTEKGNEAKRRRIIVASDSDGSDKEFNPGQAAYSSEEEEEAAPVAMSTD
EESTRESEAESPVKPVKRKRPAEKPASAKPTAPGAPRRAPALLAGDTKSRLSAFSAPDNF
ESQANGSGTGGGVTVWDHEKLEWLQGARRKDGHRRRQTEADYDAATLYVPEDFLNRSSPG
MRRWWQLKSQMFDTVIFYKVGKFYELYHMDAVVGVNELGLTFMKGSWAHSGFPEIGFGRF
SDGLVQKGYKVARVEQTETPEMMEARCKSMARPTKFDRVVRREVCRIITRGTQTYSVLDG
APAESQSKFLLSLKEKAEEESSGCCRSYGVCFVDTSVGCFHVGQFPDDRHGSRLRTLIAH
FAPAEVLFEKGNPSVETRKILKSSLSSALQEGLSAGTQFWDAQKTLKTLSEEDYFREAAG
PDQEAGTHFLPALLKAMTSESDSLGLSPREGCELGLSALGGCISYLKKCLVDQELLSLAN
FEDYVPVDVELENASGAAGFFARTRQRMVLDGVTLANLEIFQNATGGTEGTLLERLDTCS
TPFGKRLLKQWLCAPLCNPTSVEDRLDAVEELIGAPAQAAEVSDLLKKLPDLERLLSKIH
SIGTPLKGQDHPDSRAVLYEEVTYSKRKIADFLSTLEGFKTMQEIVAALAPVSGESRSAL
LRQVGGLRSEEDGLFPDLSAELRRWDTAFDHQKARATGVITPKGGFDPDFDQALASVEDC
DRQLRDYLDRQKKRLGCKTMSYWGTGRNRYQMEVPNGISERNIPEEYEVKSTKKGYRRYV
TKETERLFSELQGYEETRDAALKDCMRTLFYNFDKNYKDWKTAVECMAVIDVLLALSRYS
QGGDGPMARPQVVLPEGDGEALTFLDLAGSRHPCVTKTFFGDDFIPNDISIGCPGGGETA
EGKERASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAERLRFTPVDRVFTRLGASD
RIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVMELAEKICC
RTLFSTHYHSLVEEYADNPAVRLGHMACMVENECEDPSQETITFLYKFITGACPKSYGFN
AARLASLPEVVIQSGHRKAKEFEKSTVSLRLFKKLCQFAEDAALGDGRFSPLAHMLNAM
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacaaagctccattttcaattttttcaccaaatctccgcccccagtctccaag
tcaaagccgaagccgagtccctcgccggcggaggcggacctgccttcctccgtgaggaag
tccagctcctctccgaaagaggaggcgaaacggacaccgcaaaaaccagccaagaccagc
aaggggaagccgacaagtaacgggaagtcttcaaaggggggattcagcacattgtttggc
gacaaggccccggcagccgagcaacgcagcagcacatgcccattcactgctggtgcccct
gtgtgggcaaaactggagggacacccctggtggccgtgcctggtagtaccccaacctctg
actggacagcagatgaggggcaatgatcggaaacagcgcattcatgtccatttctttgat
gaaccccctacgagaggatgggtcagcaccaaatacatcagagactaccaaggctctgac
agcagtgacgctaaaacaggaggggtgttcttcagcggcaaacctgcagtccgtcgtgct
atggcgcttgctgatggagttatgtttgacagtcctgaaaaaagattaaagatgcctgtc
tgcatggagccgtctgatgatgatgatgatgaggaggaggaagacatggagcttgacaag
tcaacagttactgatgaagaggatagtgatgaggaagaacagaaacaggagaaagtgaag
tcgtccaaagtcagcctgcgttcatcgcgcgcttcaacagaaaagggaaatgaggccaag
cgccgccgcataattgtcgcttccgacagcgatggatcagataaggaattcaacccggga
caggctgcgtacagcagtgaggaagaggaggaggcagcaccagtagcaatgagcactgat
gaagagagcacacgtgagtcggaagcagaaagccccgtcaagcccgtgaagcgcaaacgt
ccggcagagaagcccgcctctgcgaaaccgacggcgcccggcgccccaaggcgagctccg
gcgcttctcgcgggcgacacaaagtcgcgcctgtcggccttctctgcccccgacaacttc
gagagccaggcaaacgggtccggcaccggcggaggcgtcacagtctgggaccacgagaag
ctggagtggttgcagggtgcgaggagaaaggacggccacaggcggcgccagacggaggcc
gactacgacgccgccaccctgtacgtgccagaggacttcctcaaccgaagcagtcccggt
atgcgccggtggtggcagctcaaatctcagatgtttgacaccgtcattttctacaaggtg
gggaagttttatgaactctaccacatggacgccgtggtcggcgtcaacgagctggggctg
accttcatgaaggggagctgggcccactcgggcttcccagagatcggcttcggccgcttc
tcggacggcctggtgcagaaaggctacaaggtggctcgcgtggagcagacggagacgccc
gagatgatggaggcccgctgtaagagcatggccaggcccaccaagtttgaccgcgtggtg
agaagagaagtgtgccgcatcatcactcgcggcacccagacctacagcgtgttggacggg
gctccggccgagagccagagcaagttcctgctgagtttaaaggagaaggctgaagaggag
agctcggggtgttgccgcagctacggagtctgcttcgtcgacacctctgtgggctgtttt
cacgtcggccagttccccgatgaccgccacggctcgcgcctgcgcaccctgatcgcacac
tttgccccggccgaggtgctctttgagaaggggaacccgtccgttgaaacgcgcaaaata
ctcaagtcttctctgtcctctgctctgcaggaaggacttagtgcgggcacccagttctgg
gatgcccagaagaccctaaaaaccctttcagaagaagattactttcgggaggctgccggc
ccggaccaggaggcggggacccactttcttcctgctcttctgaaagcgatgacctctgag
agcgactccctgggcctcagcccgagagagggctgtgagctgggactgtcggcactgggg
gggtgcatttcctacctgaagaaatgtctggtggaccaagagctgctctctttggccaac
ttcgaggactacgtccccgtggatgtggagctggagaacgcttctggagccgccggcttc
tttgcccggactcgtcagcggatggtgctcgacggcgtgactctggccaacttggaaatc
tttcagaacgcgacgggaggaacggaagggacgctgctggagcgcttggacacctgctcg
accccgtttggcaagaggctcctgaagcagtggctctgtgctcctctgtgtaaccccacc
tccgtcgaggacaggctggacgccgtggaagagctgatcggcgctccggctcaggcggcc
gaggtctccgacctgctgaagaagctcccggacctggagcgtctcctgagtaaaatccac
agcatcggcacccctctgaagggccaggaccaccccgacagccgagcggtgctttacgag
gaggtcacctacagcaagcgcaagatcgccgacttcctctccactctggaaggtttcaaa
acaatgcaggagatcgtcgcggccctcgcgccggtgtcgggcgagtctcgttccgcgctg
ctccgtcaagtcggcggtctgagaagcgaagaggacggcctctttcccgacctctccgct
gaactccgccggtgggatacggccttcgaccaccagaaagcccgcgccactggggtcatc
acccctaaaggtggctttgacccggacttcgaccaggccctggcctcagtcgaggactgt
gaccggcagctgcgggattacctggacagacagaagaagagactcggctgtaaaaccatg
tcgtattggggaactgggcggaaccgctaccagatggaggtgcccaacggcatctcggag
aggaacattcccgaggagtacgaggtgaagtcgacaaagaaaggctacaggcgctacgtc
accaaggagacggagcggctgttctccgagctgcagggctacgaggagacgagggacgcc
gccctgaaggactgcatgaggacgctcttctacaactttgacaagaactataaagactgg
aagaccgccgtggagtgcatggccgtgatcgatgtgctgctggccttgtcgcgctacagt
cagggtggagacgggccgatggccaggccccaggtggtgctccccgagggtgacggcgag
gcattgaccttcctcgacctcgctggatcccgccacccctgtgtcaccaagacctttttc
ggcgacgacttcatccccaacgacatctccatcggctgccccggcggcggtgaaaccgct
gagggaaaagagcgcgcctcctgtgtcctcgtcacggggccaaacatgggcgggaagtcc
actctcatgagacaatgtggactcgtcatcatcctcgcccagctgggctgctacgttccc
gccgagaggctgcgcttcactccggtggaccgggtcttcactcggctgggagcctccgac
cgcatcatggccggagagagtaccttctttgtggagctgagcgagaccgccagcatcctg
caccacgccaccaaacactcgcttgtgctcctggatgaattggggaggggcacggccacg
tacgacggcacggcgatagccagcgcggtcgtgatggagctcgccgagaagatctgctgc
cgcaccctcttctccacacactaccactcgctggtggaggagtacgccgacaaccccgcc
gtgcggttgggccacatggcgtgcatggtggagaacgaatgtgaggatccgagtcaggag
accatcacattcctctacaagttcatcaccggtgcgtgtccaaagagttacgggttcaac
gccgctcgactcgccagcctgccagaggtggtcatccaatcgggacacaggaaggccaaa
gagtttgagaagagcaccgtcagcctcaggctcttcaagaagctgtgccagttcgccgag
gacgccgcactgggagacgggcgcttctctccactcgctcacatgctcaatgccatgtag
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