Pseudoliparis swirei (Mariana hadal snailfish): 130206913
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Entry
130206913 CDS
T09868
Symbol
si:ch211-199f5.1
Name
(RefSeq) protocadherin-8
KO
K16499
protocadherin delta 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130206913 (si:ch211-199f5.1)
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Protocadherins
130206913 (si:ch211-199f5.1)
BRITE hierarchy
Motif
Pfam:
Cadherin
Cadherin_2
DUF5783
FctA
TMEM154
Motif
Other DBs
NCBI-GeneID:
130206913
NCBI-ProteinID:
XP_056291159
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All DBs
Position
2:7718108..7721778
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AA seq
992 aa
AA seq
DB search
MRLLTEGRITTKMIKGKCITYWHRWIFIFSIYQFLFASLAQSEGNTVRYQTNEEDSSGTV
IGHLAKDMSLTLSHSSKTNFRMMKQFNDSFIRVRESNGELTVGERIDRERICRHTLQCLI
TFDVVHFSKDRYRLIHVEVEIQDINDNSPEFPNKESIVEISENAAVGSRIPLDPAADADV
GSNYIQSYQISVNSHFTIDVLLRADGVKYAELVLMRALDRETQSSCTVELVATDGGNPYR
SGSTKITIKVTDFNDNSPVFDQNSFSVSLPEDAPAGAAILDLNAVDADEGLNGEVVYGFG
KQVSHEIRQLFQVDHKSGRLTLRSTVDFEDKNTYELDVQATDLGPNPTPSVCKIIIHVTD
VNDNVPEISITPMTSTTTGIAYISEGADKDSLVALISTLDRDSGVNSQVHCTVYGHDHFK
LRQAYEDSYMIVTAAVLDRERISEYNLTVMAEDFGSPPLRKITQYTIRLSDENDNAPHFT
KAVYEVSVAENNAPGAYITTVEASDADLGNNGKIAYRLVDSVIMGSPVNTFVSLNSVSGS
IYALRSFNYEVMKLLDIHVQASDGGSPKLQGTAVIRLQIVDQNDNQPSIIEPPLYKGSAE
VFLPKDTLAGYVVTQIKSTDADEGINAQLSYKITEGGHLGFSINKDNGKVYVSRQLTYDL
ADNVKVTVSVSDNGSPALTSTAIIHFSFIEGTLPSLPSLAQNGSEELFEWDISIAIIIVL
AGSCSLFLLAIVLITTICSRRKKETGEGGYDDKEEAQNMEKDESGHVDSLIANHKGKVFD
AHPFPENPRLASSNTTETGCEDGRQTADVFDSNSRVMDGKLKGYSTLPGYGKETVRPITI
WKGNSFTTISARDPHISGKDSGKGDSDFNDSDSDISGDVHKKESPPTNSLWACTSECKVL
GHSDRCWSPSATRPNTSMACGPHLSTFNKTASLPRNTARENYFPAHIPKTNALQSVYEKV
QHEECDYILVGPPTPARIQEADEMSIPECTNS
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcttaccgaggggaggattactacgaagatgataaagggcaaatgtataact
tattggcaccggtggatttttattttctcaatctatcaattcttatttgcctcactggct
cagtccgagggaaatactgttcgataccagaccaatgaggaggactcgtcaggtacagtc
atcggacaccttgccaaggacatgtccttgactctgtctcattcctccaagaccaatttc
aggatgatgaaacaattcaacgattccttcatcagggtgagagaaagcaacggggaactc
actgtcggggaacgaatcgaccgagaaagaatctgcagacacactctccagtgtctgatc
acttttgacgtggtgcatttctccaaagaccgctacagattgattcacgtcgaggtggag
atacaggacatcaatgacaactctccggagtttccaaacaaagaatctattgtggagatc
tcggagaacgcagcggtggggtctcgcatcccgttagacccggctgcggacgcggacgtt
gggtccaactacatccaaagctatcaaatttctgtcaacagtcatttcaccattgatgta
ctcctgagagcggatggggttaaatatgcggaattggtgctaatgagagcgctagacagg
gagacccagtcatcatgcaccgtggagctggtcgccacagacggagggaacccttacaga
tcggggtcaacaaagatcacgatcaaagtcactgactttaatgacaatagtcccgttttt
gaccagaatagtttctctgtcagtctaccggaggacgcaccggctggcgctgccatcctg
gacttaaacgcagttgatgctgatgagggcttgaacggagaggtcgtctacgggttcgga
aaacaggtttctcatgagatccgacaacttttccaagtggatcataaatccggtcgactg
acgctcaggagcactgtggatttcgaggacaaaaacacgtatgagctagacgtgcaggcg
accgatctgggacccaacccgaccccctccgtgtgcaaaatcataatccacgtcaccgac
gttaatgacaacgtgccggaaatcagcatcaccccgatgacctccaccacgacgggcatt
gcatacatcagcgagggggcagacaaggacagtctggtggcgctgatcagcaccttggac
agagactcgggcgtcaacagccaggtccactgcacggtgtacggccacgaccatttcaaa
ctccgacaggcgtacgaggacagctacatgatagttacagcggcagttctcgacagggag
aggattagtgagtataatttgacagtcatggctgaggattttgggtcacctccgctgaga
aagatcactcagtacaccatcagactgagcgacgagaatgacaacgcccctcacttcacc
aaagctgtgtatgaagtttcagtggcggagaacaacgcccccggagcttatatcaccaca
gttgaggccagtgacgcggatctgggcaataacggcaaaattgcatacagactggtggac
agtgtcatcatggggtccccagtaaacacctttgtgtctcttaattccgtgtctggctct
atatatgcactaagaagttttaattacgaagtgatgaagctgctagacatacacgttcaa
gcaagtgatggggggtcaccgaagctgcagggcacagctgtcatcagactacaaatagtt
gatcagaatgacaaccagccatctatcatagagccacccctttacaaaggatctgctgag
gttttcctgcctaaagatacacttgcaggttatgtggtaacccagataaagtccacagat
gctgatgaaggcataaatgcacagttgtcctataaaatcacagaggggggacacctgggt
ttctctatcaacaaagacaatgggaaggtgtatgtgagccgacagctgacatatgatctc
gcagacaatgtcaaagtcacagtctcggtcagtgacaatggatccccggcacttacctcc
acagctattatacacttcagcttcatagaaggaactctacccagtctgccttctttggct
caaaatggcagcgaggagctctttgaatgggacatatccatcgccataatcattgtcctg
gcagggagctgctctctcttcctgctggctattgttctcatcacaaccatttgcagccgc
cggaaaaaagagacaggggaggggggttacgatgataaagaagaagcacagaatatggag
aaagatgaaagtggtcatgttgattcattgattgcaaaccacaaaggcaaagtgtttgat
gcccatccgtttccagagaaccctcgattggccagcagcaacacaacagagacaggctgt
gaggatggcaggcagacggcagacgtctttgactccaacagcagggtgatggatggcaaa
ttaaagggttactcaacgctaccaggatatgggaaagaaaccgtcagaccaataacaata
tggaagggtaattcattcacaacaatctcagcgagagatccacacatcagtggcaaggac
agtggaaaaggggacagtgacttcaatgatagtgattctgacataagtggagatgtgcac
aaaaaagagtcgccgccaacaaacagtctctgggcatgtactagcgagtgcaaagtgttg
ggacactcagaccgatgctggagcccttcggctacaaggcccaacaccagcatggcctgc
ggaccacatctgtcaaccttcaacaagactgcctcacttccccggaacaccgcaagggaa
aactactttccagctcacatacccaaaaccaacgctctgcagagtgtgtacgaaaaagtt
caacacgaggaatgtgattatattctcgttggtccgccgacaccggcgagaatacaggaa
gcggatgagatgtctattccagagtgcacaaactcttaa
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