Pseudoliparis swirei (Mariana hadal snailfish): 130206967
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Entry
130206967 CDS
T09868
Symbol
nvl
Name
(RefSeq) nuclear valosin-containing protein-like isoform X1
KO
K14571
ribosome biogenesis ATPase
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130206967 (nvl)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pswi03009
]
130206967 (nvl)
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
130206967 (nvl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
Nucleolin_bd
RuvB_N
AAA_5
AAA_16
AAA_2
AAA_14
AAA_22
NPHP3_N
AAA_33
TIP49
Mg_chelatase
RNA_helicase
AAA_28
AAA_17
nSTAND3
ATPase
Vps4_C
AAA_18
NACHT
Rad17
TsaE
ABC_tran
Viral_helicase1
NB-ARC
AAA_3
nSTAND_NTPase5
Zeta_toxin
IstB_IS21
Sigma54_activ_2
TPR_Epg5_2
Glyco_transf_92
Motif
Other DBs
NCBI-GeneID:
130206967
NCBI-ProteinID:
XP_056291247
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Position
17:5287723..5303829
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AA seq
863 aa
AA seq
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MRNRNGGGLDSRLKYRVEQYMTTCTSEYVDLSAMALALQKLFRMDYGRRNRNAFRIQVEK
VYDAYMEDSGLNDHESKHLAKRAKHSHNDTGDGSSLESSDTDDHVQENTPTNHMNSSLTS
LYRKGLPDPSGSSPAASSPSSSTANQPPGSGTLVSTGGWFIDRGRGPEKSNVLIDLREEE
PTHFATNTDVSLLEPEKSHKKSKKKMKLSTETTESRIVVKKAKSKSLELHYPTLKFEDVG
GNDETLTEVCRLLIHMRHPEVYQQLGMVPPRGFLLHGPPGCGKTLLAQAVAGELQLPMLK
VSAPELVSGVSGESEQKLRELFDMAVSSSPCILFIDEIDSITPKREVASKDMERRIVAQL
LTCMDDLNSLTVTAQVMVIGATNRPDSLDPALRRAGRFDREICLGIPDEAARLRILKTLC
RKLKLQEDFDYQKLARLTPGYVGADLMALCREAAMSAVSRVLLEMRGQSKGRSSTEELLT
SGAQTEAVTDGEVGELGEQPVTDVKPVPQESEPSHLQQGDLWHLLQLLKNTATLSEEQLA
GLAILMSDFLASLSSVQPSAKREGFATVPDVTWEDVGALQDIREDLTMAILAPVRSPEQF
KALGLSAPSGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVF
QRGRNSAPCVIFFDEIDALCPRRSGHESGASVRVVNQLLTEMDGLETRRQVFIMAATNRP
DIIDPAILRPGRLDKILYVGLPPPADRHAILLTITKAGTKPQLEPDVCLQEIALDERCDC
FSGADLTALVREASINALRAHLKSQPSQASSPGLFTGHTFSSGSVADIRVSKQNFDDAFK
KVRPSVSKKEQKMYELLRETLSR
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaccgaaatggtggcggtctggacagtcgactcaaatacagagtggagcagtat
atgacgacctgcaccagtgaatatgtggacctttcagccatggccctggcacttcaaaag
ctgttcagaatggactatggcaggagaaacaggaacgctttcaggattcaagtagagaaa
gtgtatgacgcatacatggaggactccgggctgaatgatcatgagagcaaacacttggct
aagagagccaagcacagccacaatgacactggtgacggcagcagcttagagtcctctgac
actgatgaccacgtacaggagaacacccccaccaaccacatgaacagctctcttacgtct
ctgtaccggaagggactccctgaccccagcggcagctcacctgctgccagctctccttct
tctagcacggccaaccagcctccaggttcagggacgctggtttccaccggaggctggttc
attgatcgaggcagagggccggagaagagcaacgtcctcatcgacctgcgtgaagaggag
ccaactcattttgcaacaaatacagatgtgtccctgctggagccggagaaatctcacaaa
aagtccaaaaaaaagatgaagctatctactgaaactacagagtctcgaatcgtggttaag
aaagccaaatcaaagtccctcgagctgcattatcccactctgaagttcgaagatgtcgga
ggtaacgatgagacgttaacggaggtgtgtaggctgctgatccatatgcgtcacccagag
gtgtaccagcagcttggaatggttcctccaaggggcttcctcctacatggacctcctggc
tgtggaaagaccctgctggcccaggctgtggctggggagctgcagctgcccatgttaaag
gtgtctgctccggagctggtgtccggagtgtccggagagtctgaacagaagctcagagag
ctgttcgacatggctgtgagctcttcaccgtgtattctgttcatcgatgaaatcgattcc
atcaccccaaagagggaggtggcttctaaagacatggagaggaggattgtagcccaactg
ctaacgtgcatggacgacttgaacagcctgacggtgacagctcaggtcatggtcatcggg
gccaccaacaggcccgactccctggaccccgccctccgccgagctggacgattcgataga
gagatctgccttgggatcccagacgaagccgctcgtctcaggatcttgaagacgttgtgt
cgaaagctgaagttgcaggaggactttgactaccagaagctggcccggctcaccccgggc
tacgtgggcgcggaccttatggcgctgtgccgcgaagctgccatgagcgccgtcagccgg
gttctgctggaaatgagaggacagagcaaaggacggagctcgaccgaagagcttttgacg
agcggagctcagactgaggcggtgacggatggcgaggtcggagagttaggagagcagccg
gtcacagacgtcaagccggtacctcaagagtcagaacccagtcacctgcagcagggagat
ctgtggcacctgctgcagttgttgaagaacactgcgacgctctcggaggagcagctggcc
ggcctggccatcctcatgtcggacttcctggcctctctgtccagcgtccagccctcagcc
aagcgggagggctttgccaccgtgccggacgtcacctgggaggacgtgggagccctgcag
gacatcagagaggacctcaccatggccatattggctccagtgcgttctccagagcagttc
aaggctctgggcctcagtgctccgtctggtgtgctgctggccggacctccaggatgtgga
aaaaccctgctggccaaggcggtggccaatgagtcgggcctcaacttcatctccgtcaag
ggtccagagctgctcaacatgtatgtgggcgagagcgagcgggcggtcagacaggtgttc
cagagaggacgcaactcggccccttgcgtcatcttctttgatgagatcgatgccctgtgt
cctcgccgctcgggccacgagtcgggagccagtgtgcgggtcgtcaaccagctgctcaca
gagatggacggcttggagactcgccggcaggtcttcatcatggctgccaccaacagacca
gatatcatcgaccctgccatactgaggccaggtcgtctggataaaatcttgtatgtaggt
ctgccccctccagctgaccgccacgccatcctgctcactatcactaaggcggggaccaaa
cctcagctggagccggacgtctgtctccaagagattgccttggatgagcgctgtgactgc
ttcagtggagccgacctgactgccttagtgagggaagcatcgattaacgccctgagggct
cacctcaagtctcagccttcacaagcgtcttctcctggtctcttcacaggtcacaccttc
tcttctggatctgtcgccgacatccgagtgagcaaacagaactttgatgatgccttcaag
aaagttcgtccatctgtgtccaaaaaggagcagaagatgtacgagctgctcagagagacg
ctcagccgataa
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