Pseudoliparis swirei (Mariana hadal snailfish): 130206974
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Entry
130206974 CDS
T09868
Symbol
zswim8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130206974 (zswim8)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
130206974 (zswim8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
Ribosomal_L24e
SWIM
Motif
Other DBs
NCBI-GeneID:
130206974
NCBI-ProteinID:
XP_056291258
LinkDB
All DBs
Position
17:3737795..3760704
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AA seq
1955 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRIRAVKDPLQIGFHLSATVVTSQSGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTMCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIISWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPYRRLELAGQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFSWEAAY
PLDGITYCTADKRSATFCWSRAVQPQRGAKAAAAGAGGEPPEPGGGAKGDCCAAGDYKGR
SHESQQEVAVRPKETVLTKRKGLSVSGGGGMLVRLGGGVSLEDGGGKCLYKGPGSSSGGK
LKLAQGGGKGASVGGPGGSGGGGKHAGAKRRTSSEDSSLEPDLAELSLDDGCSLALGAEA
SNTFEFLPPPPEMLLRDSRKYNSGGGKMFEVKPAAAVVMDTPGAAEKEATPVQNKDEDED
VDSAGSNPPTAEARSDAEQPSAKTLRARREAAPGGAGGPEAAAASAGELANRSAESASGE
AAGEDDYHAYYPSAASEEGAERPLADNHQQEEEPDIFAGMMPLEQEGRMEVLFACAEALY
AHGYSNEACRLAVELARDLLANPPDLKVEQPQTKGKKSKVSTSRQTQVATNTLSKAAFLL
TVLSERLELHNLAFCIGMFSLELQRPPASTKALEVKLAYQESEVVSLLKKIPLGLLEMSA
IRERGEQLRDGNFCDYRPVLPLMLASFIFDVLCTPVCAVVSPTGSRPPSRNRNNDMPGDE
ELGFEAAVAALGMKTTVSEAEHPLLCEGTRRVKGDLALALMITYKDDQSKLKKILDKLLD
RESQTHKPQTLSSFYSSKPAAGSQRSPSKHAAAGASKHAPSSSSSSAVAPSSSSSAVAVA
GDEAAHQADPNPAQSNSTAGEGAAEAKEHVSDAPPPSSEQPSEAAPFKPEATVPSRLALG
ARCGYNQRCWGSPVRQKKKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWAAASWGRGQD
SDSISSSSSDSLGSSSSSGSRRAGGGARAKSTDTSRYKGRRPECHAPHVPNQPSEAAAHF
YFELAKTVLIKAGGNSSTSIFTQPSASGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWL
SRTYSSHVSWITGQAMEIGSAALNILVECWDGHLTPPEVASLADRASRARDPNMVRAAAE
LALSCLPHAHALNPNEIQRALVQCKEQFQLTVGQQTREHRVTRAARGHWMRANRGDGDPV
ESDNAMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQSAGGGGSGPQREASGRCGA
NGGSGRRPMESGCIVLDGGGGGMESAGAATVTAAVTAATVVPVISVGSAIYQSHAMPGQA
MVHPHSQGLHPYATIQAHLPTVCTPQYLGHPLQHVARPTVFPVAGAAYPQVMHPAFIGAQ
YPFSVATGPPGPPMAATAVTFPGLPLPSMTQIAVHPYHPETGLPLGTTVAVGSMHSGPAI
QAIQATALPCLSSQPGSLGGTPFPAEDEQHSQPISQQGLHYLHSAYRVGMLALEMLGRRA
HNDHPNNFSRSPPYTEDVKWLLGLAARLGVNYVYQFCVGAAKGVLSPFVLQEIIMEALQR
LNPAHIHAHLRTPAFHQLVQRCQQAYLQYIHHRLIHLTPADYDDFVNIIRSARGAFCLTP
VGMMQFNDVLQNLKRGKQTKELWQRISMEMATFSP
NT seq
5868 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatgttcgccgagtgggaggatggggagaggttctccttcgaagactcggac
cggttcgaggaagactctctgtgctccttcatctcagaggcagagagcctctgtcagaac
tggagagggtggaggaagcagtccgctggacccaactcccctacggtcaagatcaaagac
ggtcaggtgattccgctggtggagttgtcggcgaagcaggtggcgttccacatcccgttc
gaggtggtggaaaaggtctacccccccgtcccggagcagctccagctgcgcatcgcctac
tggagcttccccgagaacgaggaggacatcaggttatattcctgcctggctaacgggagt
ccggatgagttccagcgcggggagcagctctacaggatccgcgccgtcaaagacccgctg
cagatcggtttccatctcagtgccaccgtggtgaccagtcagtccggtcagtccaaaggg
gcctacaatgtggcggtcatgtttgaccgctgccgcatcacttcctgcagctgcacctgt
ggcgccggggccaagtggtgcgcccacgtggtggcgctctgcctcttccgcatccacaat
gcatcagcagtgtgtctgagggctccagtctctgagtctctgtccaggctgcagagggac
cagctccagaagttcgcccagtacctcatcagtgagctgcctcagcagatccttcccacc
gctcagcggctgctggacgagctgctgtcctctcagtcgacggccatcaacaccatgtgc
ggagcgccagacccgacagcaggcccttcagcatctgaccagagtacttggtatctggac
gagtcgaccctcagcgacaacatcaaaaagactctgcacaagttctgtgggccctcgccg
gtcgtcttcagcgatgtaaactccatgtacctgtcgtccacggagccgccggccgccgcc
gagtgggcgtgtcttctgcggcccctcaggggccgagagcccgagggcatctggaacctt
ctgtccatcgtcagggagatgttcaagaggcgagacagcaacgccgccccgctgctcgag
attctcacggagcagtgcctcacctacgagcagatcatcagctggtggtacagcgttcgg
acctcggcgtcccacagcagcgccagtggccacaccggacgcagcaacggccagtcggag
gtggcggcgcacgcctgcgccagcatgtgcgacgagatggtggtgctgtggcggctggcg
gtgctcgaccccaccatgagcccctacaggcgcctggagctagcgggccagctgaagcag
tggcacctgaaggtcatagagatcgtgaagcgcgggcagcatcgcaagtccctggacaaa
ctgttccagggcttcaagcccgccgtggagtcctgctacttcagctgggaggcggcctac
ccgctggacggcatcacctactgcaccgccgacaagaggagcgccaccttctgctggtcc
agggcagtgcagccgcagagaggcgccaaggccgccgccgccggggcgggaggggagccc
cccgagccggggggcggggccaaaggcgactgctgcgccgcgggggactacaaagggagg
agccacgagtcccaacaggaggtggccgtgcgacccaaggagaccgtcctgaccaagagg
aaaggcctgtcggtgagcggcggcggaggaatgctggtccgcctgggagggggcgtgtcc
ctggaagacggaggagggaaatgcctctacaaagggccgggctcctcctccggcgggaag
ctgaagctggcgcagggaggcgggaagggggcgtctgtcggaggcccgggagggagcggc
ggcggcgggaagcacgccggtgccaagcggagaaccagcagcgaagacagctccttggag
ccggacctggccgagctcagcctggacgacggctgcagtctggccctgggggccgaggcc
agcaacacttttgagttcctgcccccgccgccagagatgctgctccgagactcgcgcaag
tacaatagcggcggcggcaaaatgttcgaggtcaagcccgccgcggcggtcgttatggac
acgcccggcgccgcggagaaggaggcgacgcccgtccagaacaaagacgaagacgaagac
gtggactcggccggcagtaacccgccgaccgccgaggcgagatcggacgccgagcaaccg
tctgccaagaccctgcgcgcccgcagagaggcggcgcccggtggagcggggggcccagag
gcggcggcggcttccgcgggtgagctggccaaccggagcgcagagtcggcgagcggagag
gcggcgggcgaggacgactaccacgcgtactacccgagtgccgcctcggaggagggggcg
gagcgaccgctggctgacaaccaccagcaggaggaggagccggacatcttcgcggggatg
atgccgctggagcaggagggccgcatggaggtgctgtttgcgtgtgccgaggccctctac
gctcacggctacagtaacgaggcgtgccggctggccgtggagctggcccgagacctgttg
gccaatcctccggacctcaaagtggagcagccgcagacgaagggtaagaagagcaaggtg
tccaccagccgccagacgcaggtcgccaccaacacgctgtccaaggccgccttcctgctc
acggtgctcagcgagcggctggagctccacaacctggccttctgcatcggcatgttctcc
ctggagctccagaggcctccggcgtccacgaaagctctggaggtgaagctggcctaccag
gagtccgaggtggtgtctttgctgaagaagatccctctgggcctgctggagatgtcggcc
atcagggagcgaggcgagcagctccgagacgggaacttctgtgactaccggccggtgctg
ccgctcatgttggccagcttcatctttgacgtgctgtgcaccccagtctgtgcagtcgtg
tccccgacgggctcccggccgccgagtcgcaaccgcaacaacgacatgcccggcgacgag
gagctgggcttcgaggccgccgtcgccgctcttggtatgaagaccacggtaagcgaggcg
gagcatccgctgctgtgcgaaggcaccaggcgggtgaagggcgacctggctctggctctc
atgatcacctataaggacgaccagagcaagctcaagaagatactggataaactgctggac
agggagagtcagacccacaagccccagactctaagctccttctactccagcaagccggcg
gccggcagccagcgcagcccgtccaaacacgccgccgccggcgcctccaaacatgcgccc
tcgtcctcctcctcgtccgcggtggcgccctcttcttccagctccgccgtagcggtggct
ggcgacgaggcggctcatcaggccgatccgaaccctgcgcagagcaacagcaccgcggga
gagggagctgctgaggccaaggagcacgtgtcggatgcgcctcctccctcgagcgagcag
ccgagcgaggcggcgccgttcaagccggaggccaccgtgcccagtcggctggcgctgggg
gcgcgctgcggctacaaccagcgctgctggggctcgcccgtccggcagaagaagaagcac
acgggcatggcgagcatcgacagcagcgctccggagaccacctcggacagctcgcccacc
ctgagccgccggccactgcggggcggctgggcggccgcctcctgggggcggggccaggac
agcgacagcatcagcagctcctcgtccgactcgctgggctcctcctcctccagcggctct
cgccgggcagggggcggggccagggccaagagcaccgacaccagcaggtacaaaggccgg
cgtcccgagtgccacgccccccacgtgcccaaccagccctcggaggcggcggcccacttc
tactttgagctggccaagacggtgctgatcaaagccggggggaactcctccacgtccatt
ttcacgcagccctcggccagcgggggccaccaggggccccacagaaacctgcacctgtgt
gcctttgagatcggcctgtacgccctcggcctccacaacttcgtctcgcccaactggctg
tccaggacctactcctcccacgtgtcctggatcactggccaggccatggagatcggcagc
gccgccctcaacatcctggtggagtgctgggacggccacctcactcctccggaggtggcg
tccctcgccgaccgagcgtcgcgggcccgggaccccaacatggtgcgggcggcggcggag
ctggccctcagctgcctgcctcacgcccacgccctcaaccccaatgagatccagagagcc
ctggtgcagtgcaaagagcagttccagcttactgtaggacagcagacgcgtgagcaccgc
gtgacgcgggcggctcgtggccattggatgagagcgaatcgaggcgacggcgacccggtt
gaatctgacaacgccatgctggagaaggcctgcatggccgtggaggaggcggccaagggc
ggcggcgtgtaccccgaggtcctgttcgaggtggcgcaccagtggtactggctgtacgag
cagtcggcgggcggcggtggctcgggcccccagcgggaggcctccgggcgctgcggggcc
aacggcggctcgggccggcggccgatggagtccggctgcatcgtcctggacggcggcggc
ggcggcatggagtcggcgggcgcggcgacggtcacggcggcggtcaccgcggccaccgtc
gtgcccgtcatctccgtgggctccgccatctatcagtcccacgccatgccgggccaggcc
atggttcacccccacagccagggcctccacccctacgccaccatccaggcccacctgccc
accgtctgcaccccccagtacctggggcaccctctgcagcacgtggcccggcccaccgtc
ttcccggtagccggcgctgcatacccgcaggtgatgcacccagccttcatcggggcccag
tacccgttctcggtggccactggccccccagggcctccgatggcagccacggccgtgacc
ttccccgggctccccctaccatccatgactcagatcgccgtccacccctaccaccccgag
acgggcctgcccctcggcaccaccgtagcagtgggcagcatgcactcgggccccgccatc
caggccatccaggccacggctctgccctgcctctccagccagcccggctcattgggcggc
actcctttccccgcggaggacgagcagcacagccagccaatcagccagcagggcctgcac
tacctgcactctgcctacagagttggcatgctggcgttggaaatgctgggcaggagggct
cacaacgaccaccccaacaacttctccaggagcccgccttacaccgaggacgtcaaatgg
ctgctgggactggctgccaggctaggagtcaactacgtgtaccagttctgcgtcggcgcg
gcgaaaggagtcctcagtccgttcgtcctgcaggagatcatcatggaggctctgcagcgg
ctgaaccccgcccacatccacgcccacctcaggacgcccgcgttccaccagctggtgcag
cgctgccaacaggcctacctgcagtacatccaccaccggctcatccacctgacgcccgcc
gactacgacgacttcgtcaacatcatccgcagcgcccgcggcgccttctgcctgacgccg
gtgggcatgatgcagttcaacgacgtgctgcagaacctgaagcggggcaagcagaccaag
gagctgtggcagcgcatctccatggagatggccaccttctccccctga
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