Pseudoliparis swirei (Mariana hadal snailfish): 130206992
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Entry
130206992 CDS
T09868
Symbol
cfap43
Name
(RefSeq) cilia- and flagella-associated protein 43 isoform X1
KO
K24223
cilia- and flagella-associated protein 43
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pswi03037
]
130206992 (cfap43)
Cilium and associated proteins [BR:
pswi03037
]
Motile cilia and associated proteins
Tether/Tether head (T/TH) complex
130206992 (cfap43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_EML
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_HPS5
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
CFAP43_N
Beta-prop_LRRK2
Beta-prop_WDR19_1st
Acetyltransf_14
Motif
Other DBs
NCBI-GeneID:
130206992
NCBI-ProteinID:
XP_056291308
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Position
17:complement(20588550..20608767)
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AA seq
1603 aa
AA seq
DB search
MDGSLDVRWIRGITNKSIEFVDNNTVCYRCGKNICFLNLETKQQRMLQSPGRGVGALTAD
GKTGTVAFSEEKLSPSIFVYIFPELQLKNELKGAAQLDFTSLTFSSGGTYLGCCSSLPDH
TITVWNWESAEPICTQPHAGQDVISLVFNPLNWLQLCALGNTSLTVWNIEKSASFYVLKP
SVIELPATDGSFVGKLETYCHTVSDKMPYFDLEMPPSAICGLMGDMAESCVTKLCTKARL
TPSAICWMPASMLYVGCAEGFLLLVDPESRSVSVILNPTTGDSIPELQHSNFQGLTLNQK
SLITIGKESVVHCVQIKTTQINITQTWQLEGPVTTVKSSPDYETLLFSSDTGQMYVVDPT
RSYEVVKLQEVLSGNFVAAASSHTGTNICVSVKDSGVLQLWSADGVCLGSLSLKAEVTSL
ACCPIAQYAAVGTASGNVLFVDLNGEGRPRLVHRVHLYHTPVDHLVFDQEGYYLLTGASD
PYIYVLDAKPSKMFSVIGYTVVPGPILSLSTQCIRDSKQVKVLALCTGQELTVLSLPTGD
LSGSDCVDRHGCLSTQILKVSTYQVPHPLESCVLGVGEVFAYCQRRKTLQRFELPQDTDG
LPSQQVVQLKPEQEVRGHPLGPASLMLSPHQLWLASAGRDGLLLVRETAHMERFIEVHCH
SHRLGGVRSVSFSADSQTLVTAGFKDGSLVCTDLRIKGANAGKVNEATKYSQSMKDFLKN
IFYTENPVLIDSPEWGQGSPAGSEKSEVSGGADAVEVTEQDESYNSQLSAPPPPATWLES
RREAIIKEDNEQYSETKKNLRKTIKEFRDNIQEMMRENENLPDIDRLEQQEFNLDVEEQS
RLEATVEQEVARVRDEVEWEIVAKCYLSDVFRRECWESMKVKGKAIKAFHSEQQVNNYPL
KERTDKEVEDLHRVQTIRSIEKAACTSRLKKSSNTGVKEEEQEEEGHVAESAALTGSFSA
VLGCSNPYLYDQFHLQTTEQRINQMILLQDVIHCIKTAFNADFEVVYKRKVQELQRLKDR
NRHIQGIMLELGVEEKLWEPGLSTSEQPERLLTVDDSEIKAEKYLTPEQMEEEERKKLEE
QKHLAAKGNNVRDRALDDMMDGVLEVKKENILKMEIPPPEFVLTKPGIQRSEEEKKVFAE
YEKKAKDLSEEKEKYKKSMENEMKKQHTSTRDATARFDETLATLFEKKLKSEMAIYQEEL
KITYLAYSILAEDEMRNRELRFKLQLEKTLAYKDEIRDEVKRHEEELKLFQESYDNTVAE
DKVLDKEFRKGFCDVRSQVVDHLYKLFKSRPRVQKMRTQTDNSSKQCKVQRPCGSLAPDA
LVKMLKAMVELDAPENTPEGASPQIWEKFCLVRRAKVESEHKVKVKDLTLAEMHAFLQKR
RDEDSAAQQEIKNLSAGLESLHKEKNLFLSDIMVQILLKQGQVEVFTTDLTVDYTDSVLS
DRIEVENLNTTIRTLGEQKIDIMVKCKDFRQGITQLLWEHKMMEMQIEDLNTKARDIQRL
RLSEEQRDYLNNTDRDKPVFQQTSILEKTLIFQEKTHLQSVEQRAKRIEQLNRQAAEKAE
KSAALERRLPELRVAAAERTHACEALGNTTRRWAAKGDFNLVF
NT seq
4812 nt
NT seq
+upstream
nt +downstream
nt
atggacggcagtttagatgtcaggtggatacgaggtattacaaacaagagcatcgagttt
gttgacaataacacagtatgctacagatgtggaaagaacatctgtttcctcaacctggag
accaaacagcaacggatgctccagagtcccggaagaggagtcggtgcattgacagccgac
ggcaaaactgggactgttgctttctccgaggaaaagctgtccccatctatatttgtgtac
attttccctgagttacagttgaagaatgaactaaaaggtgcagcacaactggacttcaca
tctcttacattcagttctggtggtacttatctgggctgttgttcatccctgccagatcac
accataacagtatggaactgggaaagcgctgagccaatttgtacacaaccccacgctggg
caggatgtcatttctttggtgttcaaccctctgaattggctccagctctgtgctttgggc
aacacgtccctcactgtctggaatattgagaagagtgccagcttttatgtcctgaagcca
agtgtgatcgagcttccagcaactgatggttcctttgttgggaaattggaaacctactgt
catactgtcagcgacaaaatgccctattttgatcttgagatgcctccatcagccatctgc
gggctcatgggagacatggccgaaagctgtgtgactaaactctgcaccaaagccagatta
actccgagtgccatctgctggatgcccgcatccatgctttatgtgggctgtgcggaaggc
tttctgctcctggtggacccagagagccgctctgtctcagtcatcctgaaccccacaact
ggcgattccattcccgaactccaacatagcaactttcaaggtttaaccctcaaccagaag
agtttgatcactataggaaaggagagtgtggtgcactgtgtgcaaatcaaaacaactcag
atcaacatcacacaaacgtggcaattagaaggacctgtcacaactgtgaagtcctcccct
gactatgaaacattacttttttcgtctgatacaggtcaaatgtatgtggtggacccaacc
cggtcgtatgaagtcgtgaagctccaggaagttctcagcggcaactttgtggcagcagct
tcgtcccatactggcacgaacatctgtgtgtcggtgaaggattctggagtactgcagctg
tggtctgcagatggcgtgtgtcttggttccctgtctcttaaagctgaggtgaccagtctg
gcctgttgtcctattgcgcaatacgcagccgttggaacggcttcaggaaacgtcctcttc
gttgacctgaacggggaggggcgtcctcgcctggtgcatcgggttcatctctaccacacg
ccagtggatcacctggtttttgatcaagaggggtactaccttctcacaggcgcctcggat
ccatatatctatgtactagatgcaaagccatcgaagatgttttcagtcataggatacaca
gttgttcccggacccattttgtcactttccactcagtgcattagggacagtaagcaggtg
aaagtgcttgcactgtgcactggacaggagctcacagtgctctctttgcctaccggggac
ttatcaggttcagattgtgtagaccggcatggttgtctgtctacccagatcctcaaagtg
tccacataccaagtgccgcatccactcgaatcctgtgtcctgggagtcggtgaggtcttt
gcctactgccaacggaggaaaactcttcagcgatttgagcttccccaggacacagacggt
ctccccagtcaacaggtggtccagctcaaaccagagcaggaagtgaggggtcaccctctg
ggccccgcctccctcatgctgtctcctcatcagttatggctggcttctgcggggcgagac
ggcctcctacttgtccgagaaactgctcacatggagcggttcattgaagtgcattgtcat
tcgcaccgcctgggtggagttcggagcgtgtccttttctgccgacagccagacgctcgtc
actgctggctttaaagatggctctcttgtgtgcactgatctcagaattaaaggtgcgaat
gctggtaaggtgaatgaagctactaagtacagtcagtctatgaaggatttcctgaagaac
atattctatactgagaatcccgtcctcattgattcgcccgagtggggccaagggtctcct
gctggctcagagaaaagtgaggtcagtggtggagcagatgctgtggaggtgaccgagcag
gatgagagttataacagccagctgtctgccccacctccccccgccacctggttggagagc
aggcgagaggcgataataaaagaagacaatgagcaatattctgagacaaagaaaaacctg
aggaagacaatcaaagagttccgtgacaatatccaagagatgatgcgtgaaaatgagaac
ctcccagatatcgatcgcctggaacaacaagagttcaacctggacgtggaggagcagagc
cgactggaggccacggtggagcaggaagtcgctcgggtgagagatgaagtcgagtgggag
attgtagcaaaatgttacctcagtgatgtcttcagaagagaatgctgggaatccatgaag
gtcaaaggcaaggccattaaggcgtttcactccgaacaacaggtgaacaactatcctctg
aaggagcgaacagacaaggaggtggaggaccttcacagggttcagaccatcaggagcatc
gaaaaggccgcttgcaccagcaggctgaagaaaagctcaaacacgggcgtgaaggaggaa
gagcaggaggaggaaggccacgtcgcagagagcgcggctctcacgggaagtttctccgct
gtgttaggatgttcaaatccttacctctacgatcagttccatctgcaaaccaccgaacag
agaatcaaccagatgattctgctacaggatgtgattcattgcatcaagacggctttcaac
gcggactttgaggttgtttacaagcgaaaggtgcaggagctgcagcgtctgaaggacagg
aaccgacacatccagggcatcatgctggagctgggcgtcgaggagaagctgtgggagccc
ggcctgagcaccagcgagcagccggagaggctgctcaccgtggacgactccgagataaaa
gcagaaaagtacctcaccccggaacagatggaggaggaggagaggaagaagttggaagag
caaaaacatttggctgccaaaggcaataatgtcagagacagggctctggatgacatgatg
gatggagtgcttgaagtgaaaaaagagaacatcttgaaaatggaaatacctccgcctgag
tttgttttgaccaaacccggcattcagcgcagcgaggaggagaagaaagtctttgcagag
tatgaaaagaaagccaaagacctcagtgaggagaaggagaaatacaaaaagtcaatggaa
aatgaaatgaaaaaacaacacacatccaccagggatgcaaccgcgaggtttgatgaaact
ttggcaacgctgtttgagaagaaattaaaaagtgaaatggctatttatcaggaagagctc
aagatcacttatcttgcgtattcgatcctcgccgaagacgagatgagaaatcgagagctg
cggttcaagctccaacttgagaaaacgttggcatacaaggatgaaattagggacgaggtc
aagagacatgaagaagaactgaaattgtttcaagagtcctatgacaacactgtagctgag
gacaaagttctcgacaaagaattcaggaaggggttctgtgatgtgcgaagccaagtggtc
gaccacctttataaattatttaagtccagacccagagttcaaaagatgagaacccagacc
gacaacagctccaagcagtgtaaagtgcagcgtccgtgcggctctctggctcccgatgca
ctcgtcaaaatgctgaaggctatggtggagctggacgctccggagaatacaccagaaggc
gcgagcccacaaatctgggagaagttttgtctggtccgaagagcaaaagtagagagtgag
cataaggtaaaagttaaagatttgactctcgctgagatgcacgccttccttcagaagagg
agagatgaggatagcgccgctcaacaggaaattaaaaatctctccgccggacttgaaagt
ctgcataaggagaagaacctcttcctgtcggacatcatggtccagatcttactcaaacag
gggcaggtggaggtgtttaccacggacctgactgtggactacactgactccgttctttcc
gacaggattgaggtggagaacctcaacacaaccatcaggacactgggagagcagaagata
gacatcatggtgaagtgcaaagacttccgtcagggcatcacccagctgctgtgggagcac
aagatgatggagatgcagatagaggacctcaacaccaaggcgagagacatccagaggtta
cggctctctgaggagcaacgggattacctcaacaacacggatcgagacaagccggtgttc
cagcaaacttccattctggaaaaaactctaatttttcaggaaaagactcatctccaaagc
gtggagcagcgcgcaaaacggatcgagcagctgaaccggcaggcggccgagaaggccgag
aagagcgccgctctggagcggcggctgcccgagctgcgggtggcggcggcggagaggacc
cacgcctgcgaggcgttaggtaacacgacgagaaggtgggccgcgaagggagattttaat
ctggtcttctga
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integrated database retrieval system
