Pseudoliparis swirei (Mariana hadal snailfish): 130207020
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Entry
130207020 CDS
T09868
Name
(RefSeq) ataxin-2 homolog isoform X1
KO
K04496
C-terminal binding protein [EC:
1.1.1.428
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04310
Wnt signaling pathway
pswi04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
130207020
04330 Notch signaling pathway
130207020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130207020
Enzymes [BR:
pswi01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.428 4-methylthio 2-oxobutanoate reductase (NADH)
130207020
Membrane trafficking [BR:
pswi04131
]
Endocytosis
Macropinocytosis
Others
130207020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
2-Hacid_dh_C
2-Hacid_dh
NAD_binding_2
TPR_7
TFIIA
Motif
Other DBs
NCBI-GeneID:
130207020
NCBI-ProteinID:
XP_056291360
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All DBs
Position
17:complement(19621685..19706225)
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AA seq
1151 aa
AA seq
DB search
MLVPNEQSSLGRSHSWDTFGGNEGQWERAESVYEQQARVAGRRSSLTYGEGGGWYDPPAG
VHPPDLDLKRDPYSCQGSPCGQVYGERQDPRGLRKGSVPDLNRYERVPVAQRGSIPHQDY
FSHDPAMTARPPEGFYRPERQPPPPHPLSRPGSHFGLAPGARAVWDHGQGGRAGPQAPVS
PLPPPPPPTAHELSRGYRELGAVTAARMTPDGQQRIPSREPSPAHYGMEHASPRYAGEPP
PMTGQTVYTDVNGRPLDPQQPAATCLVVDPSSQGMIMRQENTSPFTVQQQQQLQQQQIQQ
QQLQQQQLQQLQQQQLQQQQLQQEQLHLQQQQPLPPPPAMPSSDPNLSTMAPLAAPPAVA
QTAAVAPIAPALAQVVQSPAPPLPIPPLPAPLAPQAHLLLDPKKTVDPEFLALLRNEGLS
ESTVSSLAQQGFDSTGMLAVMEENDVRTVAANLGQARVLSRLVRNCKRPPEAPPAPPQPQ
APTRGRSNSFSHRSDIYQQQQRHRSMHPSQALTVDAHMMHPQTPGAMQTISPRMARRPNS
APSQHLMEVSGGYAGQPPRSPGSYAGALMPVQSRPMSAYSSGMPMHGMQMMPQQMTGSMH
AMQGSMHSMSGMPQQMPVSLPAFTQPPQQVPKAYSTNYTVPMELMKRDRNLLPLSPMHSP
HPSPQMMRTVGGPAPDNVLIPMGPPGQSALAVNQKLSRRTGPPVIVSTMMSPDTSIRPQI
MNGPMHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTI
TLTREDLEKFKALRIVIRIGSGYDNIDIKAAGELGIAVCNIPSAAVEETADSTLCHILNL
YRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRSGQAVAMRAKAFGFN
VLFYDPYLQDGLERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGA
FLVNSARGGLVDEKALAQALKEGRIRGAALDVHETEPFSFSQGPLKDAPNLICTPHTAWY
SEQASLEMREAAATEIRRAITGRIPDSLRNCINKEFFVTSAPWGMMEQQHQQQQQQQQPQ
VHPEMNGAAYRFPPGALGVAPGRIPGPMEGSVPGGAPISHTLPPGIHPSQASSPNQPSKH
GDHTREHMTEP
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcttgtccctaacgaacagtcgagtctcggtcgctcccacagttgggacacattcggg
gggaatgagggtcagtgggagagggctgaaagtgtctacgagcagcaggcaagagtagct
ggccggcggagctctctgacatacggagagggaggcgggtggtacgaccctccagcagga
gtgcatccccctgacctggatttgaaacgcgacccgtattcctgccaaggctctccatgc
ggacaggtttacggggagcgacaagacccgcgggggctgaggaagggctctgtgccggat
ctaaaccgttacgaacgagtgcccgtggctcagcgaggatccattccgcatcaggattac
ttttcccacgacccggccatgactgcgcggccacccgagggcttttaccggcccgaacgc
cagcctccaccgcctcacccactaagtcggccaggctctcattttgggctggcgcccggg
gctcgtgccgtgtgggatcacggtcagggaggaagagcaggacctcaagcccctgtatcg
cctctccctccgccccctcctccaaccgctcacgagttgagccgggggtacagggaactc
ggtgcggtaactgctgccagaatgacgccggatggccaacagcgcataccctctcgggag
ccatctcctgcgcactatggtatggagcacgcgtctcctcggtatgccggtgagcctcca
ccgatgaccggtcagacagtctatacagatgtgaatggccgcccgttggatccccagcag
ccggctgctacctgtctggtcgtagatccttccagtcaaggtatgattatgaggcaagag
aacacctcgcccttcaccgttcaacagcagcagcaattacagcagcaacaaatacagcag
cagcaacttcaacagcaacaattgcaacagcttcaacagcagcagttgcagcaacagcaa
cttcagcaagaacagttgcatctgcaacagcagcagcccctgccacctccacccgcaatg
ccttcctccgacccgaacctttccacgatggctccgctggccgctccacctgccgtcgcg
cagaccgcggcagtcgctccaattgcacctgcccttgcacaggtggtccaatctccagcc
cctcctctaccaatccctccacttcccgctcctcttgccccacaggcgcatttgctcttg
gaccccaagaagacggtcgaccccgagttcctcgccctgctgcggaacgagggcctctcc
gagagcaccgtctcctcgctcgcccagcaggggtttgactccacgggcatgctggccgtg
atggaggagaacgatgtccgcaccgtcgccgccaacctcggccaggctcgcgtcctatct
cgcttggtccgcaactgcaagcggccccccgaagctccgccggcccctccccaacctcag
gcgcccacgagaggccgctccaatagctttagccatcgctcagacatctaccagcagcag
cagcgtcaccgctcaatgcacccctcgcaggctttgaccgtggacgcccacatgatgcac
ccccagacccctggggccatgcagaccatctccccgaggatggcgaggaggcccaacagc
gccccatcgcagcacctcatggaagtgtctggaggctacgcaggtcagccgcctcgctcc
ccggggtcatacgctggagcacttatgcctgttcaatcaagacccatgtccgcctactct
tccgggatgcccatgcatggtatgcagatgatgccacagcaaatgaccgggtcaatgcat
gccatgcaagggtctatgcactccatgtcgggtatgccacagcagatgcctgtgtccctg
ccagctttcacacagccgccacaacaggtccccaaagcttactccaccaattacacagta
cctatggagctgatgaagagggacaggaacctactgcctttgtcccccatgcacagccct
caccccagtcctcagatgatgcgtacggttgggggacctgccccggacaatgtcctcatc
cctatgggaccaccgggccaaagtgccctggctgttaaccagaaactaagtagacgcact
ggcccaccagtcatcgtgtccactatgatgtcaccagatacaagtattcggccccagatt
atgaatgggcctatgcacccgcgccccctggtggcgctgctggatgggcgcgactgcacg
gtggagatgcccatcctcaaagatctggccacagtggctttctgtgacgcccagtccaca
caggagatccatgaaaaggtgctgaacgaggcggtgggggccatgatgtaccacaccatc
accctgacccgagaggacttggagaagttcaaggcgctgcgcatcgtcatccgcatcggc
agcggctacgacaacatcgacatcaaggccgccggggagctcggcatcgcggtgtgtaac
attccctcggcggccgtggaagaaacggccgactcgacgctctgtcacatcctcaacctg
taccggcggaacacctggctgtaccaggctctgcgggagggcacgcgggtccagagcgtg
gagcagatccgggaggtggcgtcgggcgccgccaggatccgaggagagacgctcggcctc
atcggattcgggcgctcgggccaggcggtggcgatgcgcgccaaggcgttcggcttcaac
gtgctcttctacgacccgtacctgcaggacggcttggagcgctcgctgggcgtccagcgc
gtctacaccctgcaggacctgctctaccagagcgactgcgtctccctgcactgcaacctg
aacgaacacaaccaccacctcatcaacgacttcaccatcaaacagatgcgtcaaggtgct
ttcctcgtcaactcggcacggggaggtctggtggatgagaaagctctggctcaggccctg
aaggaaggccggatacggggcgccgccctggacgtccacgagacggagcctttcagtttt
tcccagggcccgctgaaagacgcccccaacttgatctgcacgccgcacaccgcctggtac
agcgagcaggcgtcgctggagatgagagaggccgccgccacagaaatacgccgagccatc
accggccgcattcccgacagcctccgaaactgcatcaacaaggagttctttgtgacctct
gccccgtgggggatgatggagcagcagcaccagcagcagcagcagcagcagcagcctcaa
gttcaccccgagatgaacggcgccgcctacaggttccctcccggcgcgttgggcgtcgcc
cccggcaggattcccggaccgatggaggggtcggtgcccgggggagcgcccatctcccac
accctgccccccggtatccacccgtcacaggccagctcccccaaccagccctccaaacac
ggtgaccacacgagagagcacatgaccgagccgtag
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