Pseudoliparis swirei (Mariana hadal snailfish): 130207054
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Entry
130207054 CDS
T09868
Name
(RefSeq) LIM domain-binding protein 3-like isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130207054
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
130207054
Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
130207054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
DUF4749
PDZ
PDZ_6
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
130207054
NCBI-ProteinID:
XP_056291427
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All DBs
Position
17:complement(21248722..21278436)
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AA seq
660 aa
AA seq
DB search
MSAYTVSLPGPGPWGFRLQGGKDFNMPLTISRITPGSKAALGNLVQGDVIVAIDGVGTDG
MTHLEAQNKIKMATYNLALTMTKAKRPATMQAQRMDTSIPMIPHQQIFSPAAAPNFNPSA
ALPTHQPIEVKGPGGKATIIHAQYNTPISMYSQDAIMDAIAGQTQGKGQDGGALPVRGGV
VDSDSPVYQAVQRAEQDQHQDQDRDRDQGEWGRRSGSVNTQSKSFRVLAHMTGTESLQGE
EEEALRRSSPTEHSSASVGSAPADLNPGSPGHAPQSQYSQPPAMHQAPQAPPQQQYQQPI
PQQYQQPIQQQYQQPIQQQYQQPIQQQYQQPPTQQAPPTQQSSIQIPLGSAPVKVVSTAC
IYPSQPASAPPPAPAPLQPRPPPAASAPAPGGPASSGNRPPWVSDTNFADKFDPSKTTTT
TVKMQALPQSAPPPPVYIPNPSPCAPAAPSPAPIMSNPAPFAPVARGVTQRAERFAASSR
TALCGSCNSVIRGPFLVALGRSWHPEEFNCHYCHMSLADSSFVEEQNNVYCENCYEEFFA
PSCARCTTKIMGEVMHALRQTWHTTCFVCAACGNAFGNSLFHMEDGEPYCEKDYISLFST
KCHGCDFPVEAGDKFIEALGHTWHDTCFVCAVCNVNLEGQPFYSKKDKPLCKKHAHAINV
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcctacaccgtgtcgctgcccggccccgggccctggggcttcaggctgcagggg
gggaaggacttcaacatgcctctcaccatctccaggatcactccgggcagcaaggcggcg
ctgggtaacctggtccagggcgacgtcatcgtggccatcgacggcgtcggcaccgacggg
atgactcacctggaggcccagaacaagatcaagatggctacctacaacctggcgctcacc
atgaccaaggccaagcgtcccgctacgatgcaggcacagagaatggacacctctatcccc
atgatcccacaccaacagattttctcccccgcggccgctcccaacttcaacccctccgcc
gccctccccacccaccagcccatcgaggtgaagggccccgggggcaaggccaccatcatc
cacgcccagtacaacacgcccatcagcatgtactcgcaggacgccatcatggacgccatc
gcggggcagacgcagggcaaggggcaagacggcggtgctctcccggttagaggtggtgtt
gtagacagcgactccccggtctatcaggccgtccagagggcagagcaggaccagcaccag
gaccaggaccgggaccgggaccagggcgaatggggccgccgcagcgggtcagtcaacacg
cagtccaagtccttccgggtcctggcccacatgaccggcacggagtccttacagggggag
gaggaggaggctctgaggaggagcagccctactgagcattcgtcagcttctgtcggctcc
gcccccgcagatctgaaccctggttcgcctggccacgcccctcaaagccaatacagtcag
cctcctgccatgcatcaggcgccacaagccccgcctcagcagcagtaccagcagccaatc
ccacagcagtaccagcagccaatccagcagcagtaccagcagccaatccagcagcagtac
cagcagccaatccagcagcagtaccagcagccccctacgcaacaagccccgcccactcag
cagagctccattcagatccctcttggctccgcccctgtcaaggtggtgagcaccgcctgc
atctacccatcacagccagcttcggctccacctcccgctcccgctccgcttcagccccgc
cctccacctgccgcctcagccccggctccaggtggccccgcctcctccggcaaccgaccc
ccctgggtatccgacaccaacttcgccgacaagttcgaccccagtaagacgacaaccacc
accgtgaagatgcaggcgctgccccagtccgcccctcctcctccggtgtacatccccaac
ccctctccctgcgcacctgcagctcctagccccgcccccattatgtcaaaccccgccccg
tttgcacctgtggcaaggggcgtgacccaaagggcggagaggtttgccgccagcagccgc
acggctctgtgtgggtcctgtaacagcgtcatcaggggccccttcctggtggctctcggc
cggtcctggcaccccgaggagtttaactgtcactattgccacatgtcgctggctgactcc
agcttcgtggaggagcagaacaacgtctactgcgagaactgctacgaggagttcttcgct
ccgtcctgtgcccgctgcacaaccaagatcatgggggaagtgatgcacgccctgcggcag
acgtggcacaccacctgcttcgtctgcgcggcctgcggcaacgcctttggaaacagcctc
ttccacatggaggacggagagccgtactgcgagaaagactacatctcactcttcagcact
aagtgtcatggctgtgacttccctgttgaagcgggcgataagttcattgaggctctgggc
cacacctggcacgacacctgcttcgtctgtgcggtttgcaatgtgaacctggagggtcag
cctttctactccaagaaagacaaacccctgtgcaagaagcacgctcacgccatcaatgtg
tag
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