Pseudoliparis swirei (Mariana hadal snailfish): 130207083
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Entry
130207083 CDS
T09868
Symbol
sorcs3b
Name
(RefSeq) VPS10 domain-containing receptor SorCS3
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130207083 (sorcs3b)
Membrane trafficking [BR:
pswi04131
]
Endocytosis
Others
Others
130207083 (sorcs3b)
Endosome - Lysosome transport
130207083 (sorcs3b)
Endosome - Golgi transport
130207083 (sorcs3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
BNR_6
Motif
Other DBs
NCBI-GeneID:
130207083
NCBI-ProteinID:
XP_056291484
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All DBs
Position
17:complement(20328535..20370424)
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AA seq
1242 aa
AA seq
DB search
MGLWSFLSVMAFVLLYSSHPKFVAQAEVSSPNARLYRLEVTLLEARAIRKSTEVKFDNSA
KVVIASESEAAVALNPNNGEEERKETQSGLENGALIGNNVTPNCHKRLKIPGKKCDNISE
DDQGDSAANLLLENTFPEIKKRAKRSVRSAFTNNVDRSTSGEAQSKERFVETVQGVSNSR
PEYRRTAEETKGSNPRQSEPHLDTSTFALSGDSAHNQAMVHWSGHNSSVILILTKLYDFN
LGAVTESSLWRSSDYGSTYTKLNDKVGSRTVLSYLYVCPTNKQKIMMLSDPEVESAVLIS
SDEGASFEKHPINFNILSLLFHPAQENWILAYSHDNKLYSSMDFGRKWQLIHDNVMPGRF
YWAVMGLDRESDVVHIETRIAKGRARYVKCRAQRCTEGNRVYLFPGHVDTNSLVVQDEYV
FTQVTKSGRASYFVSYMRESFKRMKLPKYCLPKDMHIISTDEKQVFAAVQEWNQNNTYSL
YISDSPGVYFTRSLENLRTSRGPGGNLLVDFFKVEGINGMYLANKLLDGHVKTFISYDKG
QTWALLPAPATDVAGNNLHCILPFCSLHLHLEMSENPYTSGPITSKKSVPGVIVAAGNIG
TELSSSHLGMFITSDAGNSWRQIFEEEHNVWFLDNGGALLAVLHAVTPIRHLWISLDEGK
KWDRHSFSLAPLYVDGVLMEPESDNHIITFFGHFGHRSEWQLIKIDYKGLFNRRCMDGDY
QTWHLHNKGELCVMGEKQLFMKRRPGNRCMLAQDYSRIYSSEPCLCTSYDFECDYGWERQ
ADGKCSPAFWFNPNGVTKSCSTSQSFLNSTGYRKVLSNNCKEGGKNVYSPKRQACRPRPP
RGLRLYTSQGELSATVGSNVTFMVYLEDGDSLRTSIQLDFGDGIKITYSNLSRTDDGINH
VYRTTGIYRVTASAENNQGSDSSTLFLHITSPVERVYLSAPIVAIRGKEVNLTAVVWPSH
TRTLTFFWWFDNSSEPIITLEGSISYTLQREGENKVTVQVASGSSVMQDSKVITVKDFFR
SLLLSFSLALDEHNPDIPEWREDIGRVVRTALSQVSGVPEYQLLVSLYPGLPSTAELFIL
PDEHTSSENKRGSEEALEMISDTCVTALNQGLIQFELKADIHIIVYMTQQTLAPLVDSNS
IHSGSAMLMLLTVVFVGLAAFFIYKFKRKIPWIHVQAVDSHEKEPEGISTVGQNDNMSKV
KLSEFPSPKELMEKELEARRRGGIGRNMERIVTREFPNCTNV
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgggactgtggtcatttctgagtgttatggctttcgtgttgctatactcatctcatccc
aagtttgtggctcaagcggaagtgagttctccaaatgcaagattgtatcgcctggaggta
acactgctggaggcacgtgcaatccgaaaatcaacggaggttaaattcgacaatagcgca
aaagttgtcatcgcttctgaatcggaagcagccgttgctttgaacccgaacaatggcgag
gaagaaaggaaagaaacacagagcggacttgaaaacggggcgctgatcggcaacaatgtg
acacctaactgtcacaagcgtctcaaaataccaggtaaaaagtgtgataacatatccgag
gacgaccaaggggactctgcagcgaatctactgttagaaaacacatttcctgagataaaa
aagagggcaaaaaggagtgtgcgttcagcattcaccaacaatgtggatcggagtacaagt
ggagaagcgcagtcaaaagagaggtttgtggagaccgtccaaggtgtttccaactccaga
cccgagtaccggcgcacggcggaggaaaccaaagggtctaacccgaggcaaagtgagcca
cacctggacacctctacttttgctctatcgggagactcggcgcacaaccaggcgatggtg
cactggtccggacacaacagcagcgtgatcctgatcttgactaagctgtatgacttcaac
ctgggcgctgtcactgagagctcactctggagatcttctgattatggaagcacctacacc
aaactcaacgacaaagtgggctcaaggaccgttttaagttacctgtatgtctgccctacc
aacaaacagaagataatgatgcttagcgacccagaggtagagagcgctgttctcatcagt
tcagatgagggtgcaagctttgagaagcatcccatcaacttcaatatcctgagcctgctc
ttccaccctgcacaggagaactggatactagcttatagtcatgacaacaagctgtacagt
tcaatggactttgggaggaaatggcagctcattcacgacaacgtgatgccaggccgattc
tactgggcggtaatggggctggacagagaatccgatgtggtccacatcgagacgcgcatc
gcaaaaggccgcgcccggtatgtgaagtgcagagcccaacgatgcacagaaggaaataga
gtgtacctcttccctggacatgtcgacaccaactcactggttgtgcaggatgaatacgtc
ttcacacaggtaaccaagtcaggacgagccagctactttgtctcctacatgagagaatcc
ttcaagcggatgaaattaccgaaatattgtctaccaaaggacatgcatattatcagtacg
gatgagaagcaggtatttgctgcagtgcaggagtggaatcagaacaacacgtacagtctg
tatatctcagactcccccggggtctactttacccgttccctagagaacctgaggaccagc
agaggacccggcggtaacctgctggttgacttctttaaggtcgaggggataaacggcatg
tatctcgcgaacaaactgctggacggtcacgtcaagacgttcatctcctacgacaagggg
cagacgtgggccctgttgccagctcctgccactgatgtggccggaaataaccttcactgc
attttgccattttgttcgctgcatcttcatctggagatgtcggagaatccatacacgtct
ggacccatcaccagcaaaaagtctgtgccaggagtcattgtggctgcagggaatatcgga
acagagctgtcctcctctcaccttgggatgtttataacatctgatgcaggaaatagctgg
agacagatttttgaagaggagcacaacgtttggtttcttgacaatggaggggcgttgctt
gccgtcttgcatgccgtaacgcctattcgacacttatggatcagtctagacgaaggaaag
aaatgggaccgtcacagtttctcgttggcccctctgtatgtggatggagttttaatggag
ccagagtctgacaatcatattatcactttctttggacacttcggtcatcggtcagaatgg
cagctgataaagatcgactacaaaggcctctttaacaggagatgcatggatggagattat
caaacatggcacctgcacaacaagggagagctgtgtgtgatgggcgagaagcagctattc
atgaagcggaggccaggcaaccggtgcatgctggcccaggactattcgaggatctattcc
tcagagccgtgtctctgcacatcctatgattttgaatgtgattatggatgggaacgccag
gcggacgggaagtgctctcctgctttttggtttaatccaaatggtgtgactaaaagctgc
agcaccagccaaagctttcttaacagcacagggtatcgaaaggttttgtcgaataactgt
aaggagggagggaagaacgtgtactcgcccaagaggcaggcgtgtcgtccccgacccccg
cgaggcctgcggctgtacaccagtcaaggagagctcagtgccactgtgggaagcaacgtt
actttcatggtctacctcgaggatggagactcgttgaggaccagcatccagctcgacttc
ggggacggcattaagatcacatactccaacctgagcaggaccgacgacggcatcaaccat
gtctacagaacaactgggatttacagagtgacagcttctgctgaaaacaaccagggatct
gacagcagcacactgtttttacacatcactagtccagtggagcgcgtatatctctccgct
cctattgtagccatcagggggaaggaggttaatctgactgcagtggtgtggccgagtcac
accagaacactgaccttcttctggtggtttgacaacagctccgagcccattataaccttg
gaaggaagcatttcatacacattgcagagagagggggaaaacaaggtcacggtccaggtt
gcttctgggagcagcgtaatgcaggattccaaagttataaccgttaaagatttcttcagg
tcgctgctgttgtcattctcgctagctcttgatgagcacaatcctgacatcccagagtgg
agggaggacataggtcgcgtggtgcggacagctctgtcacaggtttctggggtccctgaa
tatcagcttctggtgtctctgtatcctggactgccatctacagcagagctcttcatcctg
cccgatgaacacacatcaagtgagaacaagagggggagtgaggaggctctggagatgata
tcagatacttgtgtcactgccctgaaccaaggcctgatccagtttgagctgaaagcagat
attcacattattgtgtacatgactcagcaaactttggcaccacttgtggattcaaactcc
atccacagtgggtcagccatgctgatgctgctcaccgtggtcttcgttggtttagcagca
ttcttcatctacaagttcaaaaggaaaatcccttggatccacgttcaagctgtggacagt
catgagaaggaaccggaggggatcagtacagtcggtcagaatgacaacatgtcaaaggtc
aagctcagtgagtttccctccccgaaagagctcatggaaaaggagctggaggccaggagg
agaggaggaattggaagaaatatggagagaattgttacaagggaatttccaaactgtact
aacgtctaa
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