Pseudoliparis swirei (Mariana hadal snailfish): 130207086
Help
Entry
130207086 CDS
T09868
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
130207086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130207086
NCBI-ProteinID:
XP_056291489
LinkDB
All DBs
Position
17:complement(20553689..20582720)
Genome browser
AA seq
1760 aa
AA seq
DB search
MDELTRQMDFSGGLSEEKVVRETVISTSRLTSLPPKGTSGSNHRNMSSSAGGLGLEKNVL
TQNSSRTYFSSSSVGVNTSSFSSSSGVYVGGDSSGGDGGGVFIDGDGFRSTGGGRGGGGR
GIGGGSGGGSSGGGGGGGGGGGSYLVSSVSKVRSSSSGGARRTQTAGSAGGLSPVFRERK
NVSSRSGGYDGSSSGNSSPEFPRKDYGIYCSSATRGRSESRESEIRARLQSASPSASRWT
ELDDVKKLLKGRSCSVSPTRCSITLPVPKKASVETKTASVASQSGSTSFGPGVRSAGFQT
IDTSGFYDTGLTSGQFDTGVKLGHCDVGLKSGQYDTGVRSAQYDTGVRSGQYDTLDATLP
TLSWSTSTLPSASTTVVAGNTSTYQSGNNNMSVGSAPLCLTSPSSLSVYGFQNNLAPTSP
SVLTTSGSNTLPSPGGYGVQKNLSNGGGFIGSGISTTTRSHTDDSYKKDKFLMSDKENFP
AKRDTEMLITAKDTGKQFSSGCFPMGGGSISGDSMKKEKLASSYTETMPLKSETGNSYYG
SSGVVMKDKATYAEIHKDDGIFGGGGGLCCCSDACCAWWKWLLGLLLLSLLLLGLLFGLI
ALAEDVRKLKNRVATLEAESSVTAARTGRLSGSSNDLNFYGATGAGAGGVAGGVAGAGAG
AVAGGVAGAGGVAGAGAGGGGTAHTDNTLHLDAGGGGGSSGSKTRIVIAGAGGGAGAGHG
VDVIFGGGSAGANGAVATGANAGGGAGTSGSASRSVSTGTSFSGSAGGTGLGTGVSGGHV
DATSLQMTIRQMLRTEMQSQSYRAFLASSVQGDRGMPGPKGDSGTKGDSGFAGLPGAPGG
MGHAGPEGPKGQKGNLGDHGVDGAPGVRGREGPSGPRGEVGPSGFGTKGERGTAGEAGSV
GPTGPKGATGVHGSSGAPGLQGFRGEAGPPGHNGDRGLPGIQGLKGDTGDTGLRGVKGER
GLQGSAGETGPKGSIGFPGVDGLKGSRGDQGSAGPPGLRGPSGPPGDDAISGTHRLQGPP
GIPGNPGRPGAKGDAGEPGRITNAGGSTTYAIAGPLGPPGPSGSAGLPGLPGSVGPAGGP
GQPGVKGDRGYRGEQGEDGITVRTSETLNSRQFSASGGSGQPGPPGPPGQPGRPGDSRQG
PPGPAGPTGPPGYGRSGPKGDKGDAGFASSSGTFQTGPPGPPGPFGPKGSAGTLGPRGYQ
GEPGQAGVPGSPGRPGSTERGVSSYGGRNSVPGPPGPPGNPGLPGPQGFKGDTGAPGGSG
SSRGSVSVSSGPPGPAGPPGPPGVPGSHTSSSEMHQYVNDYLSRSRHSNIPGPAGPPGPP
GLPATFSGSMDDISTRIISYIQRSGSGLSSGGQGPPGPPGPPGPSYGSGSAAMTVSGLIN
LLQREDVRRYLLGPPGPPGSQGPPGQSGGSSSSYNVEEISAYVFKIMNDKGISRGLPGPP
GPAGPSGSGGSGYTTATIDYSALMRNPDFRSWINSAVQHGPPGPPGQSGPPGPQGPSGVS
TSLGSQGRGYSLEEIQRYLQSAGFRGVPGSPGPQGPQGPQGPTGSAHFSHNAHFPRESIR
TEIQEYLTSDGVRRSIVGTPGPPGPRGQKGDRGESGYIQSHAQSQSYSQGDSQFGSERRD
IDSVAIKVTDYIKNQGLLQGYLVEGAPWRGSVRAVQGPPGPPGPAGPAGQSRVIGSYGNV
TADLMEFFRTYGTTPGPLGAPGLRGDQGHPGPRGEKGDPGRPGLPGIPGSYSLQIPHRVQ
KRDAEEKIVGRRHRRHAAVG
NT seq
5283 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacaagacagatggacttctcaggaggcctgtcggaagaaaaggttgtg
agagaaactgtaatctccacctccagactgacttctctcccaccaaagggaacaagcgga
tcaaatcacaggaatatgtccagcagtgctggagggctgggcttggagaagaatgtctta
acccagaacagcagccgaacttatttttcttcatcttctgtaggtgtgaacaccagcagc
ttcagctcctcctcaggagtttacgtcggaggagactcctcaggaggtgatggaggggga
gtcttcatagacggagatgggttcagaagtacaggaggaggacgaggcggcggaggacga
ggcatcggaggaggcagtggaggaggaagcagtggaggtggaggaggcggcggaggaggg
ggcggcagttatctcgtgagctcggtgtcaaaggtcaggtccagctcgtcgggcggtgcc
aggagaacgcagactgctggctcagcaggaggcctgtctccagttttccgggagaggaag
aacgtatccagccgctcaggaggttatgacggaagttccagtggcaattcctctccagag
tttccacgcaaagattatggaatctattgctccagcgccacaagagggaggagtgaaagc
agagagagcgagatcagagccagactacaaagcgcctctccttccgccagcagatggacg
gagctcgacgacgtgaagaagctgctgaagggacgctcctgcagcgtcagtcccacccgc
tgctccatcaccctgcctgtcccgaaaaaggccagcgtggaaaccaagacggcctccgtg
gcctctcagtcgggttcaacttcatttggccctggtgtgagatcagctgggttccaaacc
atcgacacatcaggcttttatgataccggcctgacatctgggcagtttgatactggtgtc
aaattgggccattgtgatgttggtctgaaatcagggcagtatgacactggtgtcagatca
gcccagtacgacactggtgtcagatcaggccagtatgacacgttggacgcaacgcttcct
actttatcttggtccacctccaccttgccctccgcctccaccacggtggtcgctggcaac
accagcacctaccagtctggcaacaacaacatgtcggtaggatcggcgccgctctgcctc
acctcgccctcgtccctgtcggtttacggctttcagaataatctggctcccacttctccc
agtgtgctcacaaccagtggaagcaacacactcccttctcctggaggttacggcgttcag
aagaacttgtcaaatggcgggggtttcatcggctctggaatctctacaaccactcgatcc
cacactgatgattcatacaagaaagacaagttcctgatgtctgacaaggagaactttcca
gccaagagggatacagaaatgctcataacggccaaagacaccgggaagcagttcagcagc
ggctgcttcccgatgggaggagggtcgatatcaggagattcgatgaagaaagagaagctc
gcttcaagctacacggagacaatgccactcaagtcagagacaggcaactcttactatgga
tcatctggagttgtaatgaaagacaaagccacctatgcagagattcacaaggatgacggc
atcttcggaggaggtggaggactatgctgctgctccgacgcctgttgcgcttggtggaaa
tggctgctgggtcttctcctcctctccctgctcctgcttggactcctgtttggcctcatt
gcactggctgaagacgtgagaaagctgaagaatcgagtggctacgctggaggccgagtcc
tcggtgactgctgctcgtaccggccggctgtcaggctcttccaatgacctcaacttctat
ggggccactggagctggagctggaggtgtagcaggaggtgtagcaggagctggagctgga
gctgtagctggaggtgtagctggagctggaggtgtagcaggagcaggagctggaggtgga
ggtaccgcccacactgacaacacgctgcatcttgacgccggaggtggaggtggaagctcg
ggctccaaaacaagaatcgtgattgctggcgctggcggcggcgccggcgctggacacgga
gttgacgtcatcttcgggggtggttctgctggcgccaatggggctgtggccaccggggcc
aatgctggtggaggggccggtaccagtggcagtgccagcagaagcgtcagtaccggtacc
agtttcagtggcagtgctggcggcactggtctcgggaccggagtgagcggaggacacgtc
gacgctacttctcttcagatgacgatccggcagatgttaagaactgaaatgcagtcgcag
tcatacagagctttcctagcatcgtcagtgcagggagatcgaggaatgcctggacctaaa
ggggactctggaactaaaggagattctggtttcgctggacttccaggtgctccgggtgga
atgggacatgcaggccctgaaggtccaaaaggacagaaagggaacctcggtgatcacggg
gtggatggcgctccaggcgtcaggggtcgcgagggcccgtccggccccagaggcgaggtc
ggaccttcaggctttggaacgaaaggtgaaagaggtaccgccggggaggccgggtctgtc
ggcccgaccggacccaaaggtgcgactggagttcatggatcttctggggcaccaggtctt
cagggtttccgtggcgaggcaggaccacctgggcataacggggacagagggctgcctgga
atccaaggacttaaaggggacactggtgacacgggtctcagaggtgtgaaaggtgaacga
ggtctccaagggtcagcaggagagacaggacccaaagggtcaatagggttccctggagtt
gatggattgaaaggatcaagaggtgaccaaggatctgctgggccacctggactcagaggt
ccttctgggcctcctggagatgatgcaatttcaggaacccacaggcttcaaggaccacca
gggataccagggaacccaggaagacccggcgctaaaggtgacgcaggtgaaccaggaaga
atcaccaatgcaggtggctccacaacttacgccatcgcgggaccactcgggcctcctggt
ccttccggttctgcaggtcttccaggattaccaggttccgttggccctgctggtgggcct
ggccaacctggtgttaaaggtgacagagggtataggggggagcagggagaagacggaata
acagtgaggacatcggaaactctcaactcaaggcagttcagtgccagtggagggtcagga
caaccgggcccacccggcccaccgggccaacctggacgtccaggagattcaagacaagga
ccaccgggaccggctggacccacaggtcctccaggttatggaagatcaggaccgaaagga
gacaagggagacgcaggctttgcctccagctctggaactttccaaactggaccaccggga
ccaccggggccttttgggcctaaaggatcagcaggtactctcggaccaagaggttaccaa
ggtgaaccgggccaggcgggcgtgccgggttcacccggaagaccaggaagcaccgagaga
ggagtgtcgtcttacggaggaagaaacagtgtccctggaccgccgggtccaccgggaaat
cctggacttcctggcccacaaggttttaaaggggacactggggcccctggtggttctggc
tcttcaagaggctccgtctcagtctcctcgggccctcccggccccgcgggtcctcctggt
cctccaggcgtgcccggctcccacacttcatccagtgagatgcatcaatacgtcaacgac
tatctgagtagaagcagacactctaatatccccggacctgcaggtccacctgggcccccg
ggacttcccgcaaccttttcaggctctatggatgacatctccactcgtatcatttcatat
atacaacgttctggctcaggcctcagcagtggtggtcagggtcctccaggaccacctggc
ccacctggacctagttatggctctggctctgcggccatgacggtcagcggtctcatcaat
ttgcttcagagagaagatgtgaggaggtatctgttgggaccaccagggccaccaggatca
cagggaccaccgggccaatcaggaggaagttcaagcagttacaacgtcgaggagatatcc
gcttacgtcttcaaaatcatgaacgacaaagggatttctagaggtctgcccggcccaccc
ggtcctgctgggccttctggttccgggggttctggctacactaccgctacgattgactac
tccgcactgatgagaaaccccgacttccgctcttggatcaactccgccgtacaacacggt
cctccgggtcctccggggcaaagtggccctcctggtcctcagggcccgtcaggagtctcc
acttcgctcgggtcgcaaggtcgcggctacagcttggaggagattcagcgttacctgcag
agtgctggtttcagaggtgttcccggctctcctggtcctcagggaccacaggggccacag
ggtccaacaggcagcgcacacttttcccacaatgcacacttccctcgggagagtatccgc
actgaaattcaagagtacctgaccagtgacggtgttcgtcgctccatcgtcggaactccg
gggcctccgggaccgaggggtcagaagggagatcgcggcgagtcgggttacatccagagc
cacgcgcagagccagagctactctcagggtgactctcaattcggctccgagcgcagggat
atcgacagcgtcgccataaaggttacggactacatcaagaatcaaggcctgctgcagggc
tatctggttgagggtgctccttggagggggagcgtgagagcggttcaagggccccctggt
ccacctggccccgccggacccgccggtcagagccgcgtcatcggttcctacggcaacgtc
acagccgacctcatggagttcttcagaacgtacggcaccacccccggccctctaggagcc
cccggactaaggggtgaccaagggcatcctggacccagaggagaaaagggcgatcccggg
cggccaggtttaccgggcatccccggatcctactctctccaaattccacacagagtacag
aagagggacgcagaagagaaaattgtcggtcgtcgccatcgccgccacgccgccgtcggc
taa
DBGET
integrated database retrieval system
