Pseudoliparis swirei (Mariana hadal snailfish): 130207104
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Entry
130207104 CDS
T09868
Name
(RefSeq) serum response factor-like isoform X1
KO
K04378
serum response factor
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130207104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130207104
Transcription factors [BR:
pswi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
130207104
BRITE hierarchy
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
130207104
NCBI-ProteinID:
XP_056291523
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Position
17:8122565..8144750
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AA seq
591 aa
AA seq
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MLPSRVGSAPSGNGSASDRGNTGHVSGIVAGGIRPVSIRAGQALPGVSESDGRQGERDAV
GMLGANGPGDSRGVRPGNGTGVTPLQTAVQGNMGMGLPHGARFDPDRESAPLCSGSDNDS
DSGEDDDPVGSLGDSRRGVKRERGEMEAAVTGQEVGLPPGGYGMVPGGVAGAKPGKKTRG
RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKL
QPMITSETGKALIQTCLNSPDSPPRSDPSTDQRMSATGFEETDLTYQVSESESMGDTKDT
LKPTFTVASLPGGTSSTQCTVPTTSTTMQVSSGPSFPITNYLAPVSASGNICANGTVLKT
AGGSAGVMQLPSGFTFMPAGTTLPPGTPTIPLSQLQQHSLALQGQHGQALAAAPQPMQGQ
QAVFRFPAAVSLTGPGLSQQLQAIQVHHNTHSISDSGLDICHTSTNSTATVSLPATIVTS
SLPTSVTGHMMYPSPHTVMYASTPTLTDGGLAVLNAFSQGTSAMQVSHVQSQDTGAVPQV
FLTAPPGTMQIPVSAVQLHPMVIGPQSSGSSSNLTELQVVNLDTAQNSKSD
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgttgccgagccgggtcggttcggcaccatctggaaacgggtcagcttcagacaggggt
aacacgggacacgtttcggggattgtcgctggcgggatccgtcccgtttcaatcagagca
gggcaagctttaccgggggtcagcgagagtgacgggcgacagggggagcgagacgccgtt
gggatgctgggggctaatggtccaggggactcgaggggcgtgaggccggggaacgggact
ggcgtgacccctctgcagaccgccgtccagggcaacatgggaatggggctgcctcacggg
gccaggtttgacccggacagggagagcgcgcctctgtgcagcggctcggataatgactcg
gactccggagaggacgacgacccagtgggttcactcggggacagcaggagaggggtgaaa
cgcgagcgaggggagatggaggctgcggtgacggggcaggaggtggggttacctcccgga
ggttacggcatggtgcccggaggggtcgcgggggcaaagccggggaagaaaacacgtggg
cgcgtaaagataaagatggaatttatcgacaacaagttgagacgttacacaactttcagc
aagaggaagactggtattatgaaaaaggcctatgaactctccaccctgacgggaacccag
gttctactgcttgtggccagtgaaacgggtcacgtctacacgtttgccacccggaaactc
caacccatgatcacaagtgaaacgggcaaagcgctgatccaaacatgcctcaactcgccg
gactcgccgccgcgctctgacccctccacggaccagcgcatgagtgccacgggctttgag
gagacggacctcacctatcaggtgtctgagtcggagagcatgggcgacacaaaggataca
ctgaagccgacgttcacggtagccagcctaccgggtggtaccagcagcacccagtgcacc
gtacccaccacctccactaccatgcaggtgagcagcggcccttcgtttcccatcaccaac
tacctggcgcccgtctcggccagcggcaacatctgcgccaatggtaccgtcctcaagacc
gccggtggctccgcgggggtcatgcagctgcccagtggcttcacgttcatgcccgcaggc
actactctcccccctggcacccccaccattcctctgagccagctgcagcagcactccctg
gccctccaggggcagcatggtcaggccctggctgctgccccacagccgatgcagggacag
caagctgtcttccgcttccctgctgctgtctccctcacaggacctgggctttcccagcag
ctccaggctattcaggtccaccacaacacccattctatctccgacagtggcctcgacatc
tgccacacctccacaaactccaccgcgacggtcagtctcccggcgaccatcgtcacctcg
tcattgccgacgtctgttacgggtcacatgatgtaccccagcccgcacacggtgatgtat
gcctccacgccaacgctgactgacggggggctggctgtgctcaacgccttctcccagggc
acctcggccatgcaggtgtcccatgtacagtcccaagacacaggtgctgtccctcaggtg
ttcctcacagcacctccaggcacgatgcagatccccgtctctgcagtgcagctacaccca
atggtgattggtccgcagtcgagcggcagcagtagtaacctgacggagctccaggtggtc
aatttggacacagcacagaactcaaagagtgactga
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