Pseudoliparis swirei (Mariana hadal snailfish): 130207172
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Entry
130207172 CDS
T09868
Name
(RefSeq) gamma-aminobutyric acid receptor subunit pi
KO
K05189
gamma-aminobutyric acid receptor subunit pi
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04080
Neuroactive ligand-receptor interaction
pswi04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
130207172
04082 Neuroactive ligand signaling
130207172
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130207172
Ion channels [BR:
pswi04040
]
Ligand-gated channels
GABA-A
130207172
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
Motif
Other DBs
NCBI-GeneID:
130207172
NCBI-ProteinID:
XP_056291628
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Position
17:complement(2199893..2229029)
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AA seq
459 aa
AA seq
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MALSVSGGTVFTILLISRLLENSMLNAEVKEGQILPPTIHKLMKGYNKYLRPFFDNGPVT
VGMSLDIASIDTISEINMDYTATIFLRQRWTDERLVFEGNKSLSLDGRLVELLWVPDTFI
VDSKKSFLHDITVENRLIRIFPNGTVLYALRITTTVACNMDLTKYPMDKQTCKLQLESWG
YNINDVMFYWTRGNESVSGLDTLQLAQYTVEGHYTSVSEAVYETGNYPKLVFHFELRRSI
LYFILETYVPSSLLVVLSWVSFWISLSSVPARICIGVTTVLTMTTLMMGARTSLPNANCF
IKAIDVYLGICFSFIFGALIEYAVAHFCSLSHLDTHILMYGHHMHDLDDEMNGIITTISN
HNRAKRRKAAAAAPPPPVSLELTVGPSSPCGSEPRLEATPPPKPTHWCLAALAAVRKVLR
ALYCCHVENPHHIDNYSRVTFPLSFVVVNLLYWTYYLYF
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggctctctctgtgtccggaggcaccgtgttcaccatcctcctcatcagcaggttgtta
gagaactcgatgctcaacgcagaagtgaaggagggacagattctgcctccgaccattcac
aagctgatgaagggatacaacaagtacctccggcctttctttgacaacggtcccgtcaca
gtcggtatgagcctggacatcgccagcatcgacacgatctcagagatcaacatggactac
accgccaccatattcctccgccagcgctggacggacgagcgcttggtgttcgagggcaac
aagagcctgagcctggacggccggctcgtggagctgctctgggtcccggacaccttcatc
gtggactccaagaagtccttcctccacgacatcaccgtggagaaccggctgatacgcatc
ttccccaacgggaccgtcctttacgcgctgaggatcaccaccacagtggcttgcaacatg
gatctgaccaagtatcccatggacaagcagacgtgcaagctgcagctggagagctggggc
tacaacatcaacgacgtcatgttctactggacccggggaaacgagtcggtcagcgggctg
gacaccctgcagctggcccagtacacggtggagggacactacacctccgtctcggaggcc
gtctatgagaccggcaactacccgaagctggtgttccacttcgagctgaggaggagcatc
ctgtacttcatcctggagacctacgtcccctccagcctcctcgtggtcctctcctgggtc
tccttctggatttccctctcctccgttccggctcgtatctgcatcggcgtgaccacggtg
ctcaccatgaccacgctgatgatgggcgcccggacctcgctgcccaatgccaactgcttc
atcaaggccatcgacgtgtacctgggcatctgcttcagcttcatcttcggggcgctcatc
gagtacgccgtggcccacttctgctccctctcccacctggacacccacatcctcatgtac
ggccaccacatgcacgacctcgacgacgagatgaacggcatcatcaccaccatctccaat
cacaaccgggccaagagacgcaaggccgccgccgccgccccgccgccgcccgtctcctta
gaactcaccgtcggcccgtccagcccctgcggcagcgagcccaggctcgaggccacgccc
cctccgaagcccacccactggtgcctcgccgctctggccgccgtccgcaaagtcctccgc
gccctgtactgctgtcacgtggagaacccccaccacatagacaactactccagggtcacc
ttccccctctccttcgtcgtggtcaacctgctctactggacgtattacctgtacttctag
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