Pseudoliparis swirei (Mariana hadal snailfish): 130207227
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Entry
130207227 CDS
T09868
Symbol
sptbn1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04517
IgSF CAM signaling
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
130207227 (sptbn1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130207227 (sptbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pswi04812
]
130207227 (sptbn1)
Cytoskeleton proteins [BR:
pswi04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
130207227 (sptbn1)
Intermediate filaments
Intermediate filament-binding proteins
130207227 (sptbn1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
DYH2-5-8_CC
CH_2
Motif
Other DBs
NCBI-GeneID:
130207227
NCBI-ProteinID:
XP_056291701
LinkDB
All DBs
Position
17:14445407..14545416
Genome browser
AA seq
2356 aa
AA seq
DB search
MELQSATASGLPGPLSPTLDYALSPMSDGPSHGTSPNLSPGFSSQAAFNYNQLEGRFKQL
QDEREAVQKKTFVKWVNSHLSRVSCRITDLYMDLRDGRMLIKLLEVLSGEKLPKPTKGRM
RIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDIRVETED
NKEKKSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNAIVHKHRPDLIDFDKLKKS
NAHHNLQNAFNLAEQHLGLTKLLDAEDISVDHPDEKSIITYVVTYYHYFSKMKALKVEGK
RIGKVLDNAIETEKMVDKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYR
TAEKPPMFTEKGNLEVLLFTIQSKMRANNQKVYTPREGKLISDINKAWERLEKAEHEREL
ALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVDAATKKHEAIE
TDIAAYEERVKAVVSVAREMESENYHDIKRITARKDNVIRLWEYLLELLKARRLRLELTL
GLQRVFQEMLYIMDWMDEMKMMLLSQDYGKHLLGVEDLLQKHALVEADISVQADRVRNVN
RNAQKFADDMEGYKPCDPQIIRDRVAHMDFCYQELSQLAAERRARLEESRRLWKFFWEMA
EEEGWIREKEQILSSEDYGKDLTGALRLLSQHKAFEDEMSGRAGHLQQTIKQGEELVANN
HFGADKIKERIQDVQEQWAALERLSAVRKARLQEACNQHQFQADADDIDTWMLDVLRIVS
SVDVGHDEFSTQALVKKHKDVSEEIRSYRPVIEALHEQSRTLPPEKANSEEVQTRLAGIE
ERYKEVVELTRLRKQALQDALALYKMLTEACACEVWIDEKEQWLNSMDIPEKLEDLEVVQ
HRFESLEPEMNNQASRVAVVNQVARQLVHCGHPSEKEIKTQQDKLNTRWSQFRDLVDQKK
DSLSSALGVQNYHLECNETKSWIKEKTKVIESTQELGNDLAGVMALQRKLTGMERDLAAI
EDTLGDLGKEADRLASEHPEQSEAIKGRLDGITGVWGEMKDTMKNREESLGEASKLQQFL
RDLDDFQSWLSRTQTAIASEDMPNALAEAEKLLAQHENIKNEIRNYEEDYQKMRDMGEMV
TQGQTDAQYMFLRQRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAFLNNQ
EYVLAHTEMPTTLEGAEGAIKKQEDFMTTMDANEEKIIGVVDTGRRLVTDGNINAERAQE
KVDSIDQRHKKNRAAASDLQSRLRDNRDLQRFLQDCQELSLWINEKMLTAQDMSYDEARN
LHSKWLKHQAFMAELQSNKEWLDKIDKDGQELMAEKPETEAMVKEKLASLKTMWEELEST
TKAKAKCLFDANKAELFTQSCADIDKWLGGLDGQLQSDDYGKDLTSVNILLKKQQILESQ
VEVRQKEVGELQGQSQVLSQEGKGSEEVDGQRIGVEKKFQSLQDPLKKRRDNLMASREIH
QFNRDMEDEILWVEERMALATSTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRYDDIFERS
QHVLRESSPTAEVIRQRLAELQALWEQIRKETEKRHTRLSEAHEAQQYYFDAAEAEAWMS
EQELYMMSEEKAKDELSSVAMLKKHQILEQAVEDYADAVHQLSSTSRGLVAIEHPDSERI
GMRQSQVDKLYAGLKDLSEERRGKLDERLRLFQLNREVDDLEQWIAEREVVAGSHELGQD
YEHVTMLQERFREFARDTGNIGQERVDTVNQQADELINTGHGDAATIAEWKDGLNEAWAD
LLELIDTRTQILAASYELHKFYNDAKEILNRILDKHKKLPEELGRDQNTVETLQRMHTTF
EHDIQALGMQVRQLQEDAIRLQSAYAGDKADDIQKREGEVLEAWKHLMEAAEGRRVKLVE
TGDKFRFVSMVRDLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTA
CIELGKALLARKHYASEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVHQFSRDAGVA
EAWLQGQDPYLSSREIGQNVDEVEKLIKRHEAFEKSAATWEERFSALERLTTMELLEVRR
MQEEEEKRRQPPPTEEQQLGDAAAQHREGELVSQNGLPSDQESPMDGEGGEVVNGVSEPS
PTGSPGAARKAKASQAATLPAKSQQDAPTSQLESFLHRKHEWEGHNKKASSRSWHNVYCV
INQHEMGFYKDQKSGSQGIPYHSEIPVSLKDAVCEVALDYKKKKHVFKLKITDGNEYLFQ
AKDDEEMNLWISAISTAMACDKAEVTPSSHSTPAPAARAQTLPASVAVTATPAPESSPGK
REKDKEKRFSLFSKKK
NT seq
7071 nt
NT seq
+upstream
nt +downstream
nt
atggagcttcagagcgccaccgccagcggcctccccgggcccctgtccccgactttggac
tacgccttgtccccgatgtcggacggcccttctcatggcaccagccccaacctcagcccc
gggttctcgagccaggcggccttcaactacaaccagctggaggggaggttcaaacagctc
caagatgagcgcgaggcggtgcagaagaagaccttcgtcaagtgggtgaactctcacctg
tccagggtttcctgtcggatcaccgacctctacatggacctgagggacgggcgcatgctc
atcaagctgctggaggtcctgtcgggagagaagctgcccaaacccaccaagggccgcatg
aggatccactgcctggagaacgtggacaaggctctgcagttcctgaaggagcagagggtc
cacctggagaacatgggctcccacgacatcgtggacgggaaccaccgcctcaccctgggg
ctcatctggaccatcatcctccgcttccagatccaggacatccgagtggagacggaggac
aacaaggagaagaagtcggctaaagacgctctgctgctctggtgtcagatgaagacggcc
ggatatccaaacgtcaacatccacaacttcagcaccagctggagggacgggatggccttc
aacgccatcgtccacaaacacagaccggacctgatcgactttgataagctgaagaaatcc
aacgctcaccacaacctgcaaaatgccttcaacctggccgagcagcacctgggcctcacc
aagctgctggatgccgaggacatcagtgtggaccaccccgatgagaagtccatcatcacc
tacgtggtgacctactaccactacttctccaagatgaaggcgctgaaggtggaggggaag
agaatcggcaaggttctggacaacgccatcgagacggagaagatggttgacaagtacgag
tctctggcgtcggacctgctggagtggatcgagcagaccatcatcatcctcaacaacagg
aagttcgccaactctctggtgggcgtgcagcagcagctgcaggccttcaacacctaccgc
acggcagagaaaccgcccatgttcacagagaaggggaacctggaggttcttctgttcacc
atccagagcaagatgagagccaacaaccagaaggtttacactcctcgagaaggaaagctc
atctccgacatcaacaaggcgtgggagcgtctggagaaggcggagcacgagcgggagctc
gctctgaggacggagctgattcgccaggagaagctggagcagctggcgcggcgcttcgac
cgcaaagccgccatgagggagacgtggctgagcgagaaccagcggctcgtctcccaggat
aactttggatttgacctccaagccgtagacgctgctactaagaagcatgaagccatagaa
acagacatagccgcctacgaggagcgagtcaaggcggtggtttccgtggcgagggagatg
gagtctgagaattaccatgacatcaaacgcatcacggccaggaaggacaacgtgatccgg
ctgtgggagtacctgctagagctgctgaaggcccgccggctgagactggagctgacgctg
ggcctgcagagagtcttccaggagatgctctacatcatggactggatggatgagatgaag
atgatgctgctctctcaggactacgggaagcacctgctgggcgtggaggacctgcttcag
aagcacgctctggtggaggccgacatcagcgtccaggccgaccgagtccgcaacgtcaac
cgcaacgctcagaagttcgccgacgacatggagggttataaaccctgcgatcctcagatc
atcagggaccgcgtcgctcacatggatttctgctaccaggagctgagtcagctggcggct
gagcggcgagctcgcctcgaggagtcccgccgcctctggaagttcttctgggaaatggcc
gaagaggagggctggatccgggagaaggagcagatcctgtcctccgaggattacgggaag
gatctgacgggtgcgctgcgactgctgagtcagcacaaagccttcgaggacgagatgagc
ggccgagccggccacctgcagcagaccatcaaacagggcgaggagctggtggccaacaac
cacttcggagccgacaagatcaaagagcgcatccaggacgtccaggagcagtgggcggct
ctggagcgtctctccgccgtccgcaaagctcgtctgcaggaagcctgcaaccagcaccag
ttccaggccgacgccgacgacatcgacacgtggatgttggacgtgctgcgcatcgtctcc
agcgtggacgtcggccacgacgagttctccacgcaggctctggtgaagaaacacaaggac
gtgtccgaggagatccgcagctaccggcccgtcatcgaggcgctgcacgagcagtctcgc
acgctcccacccgagaaggccaactctgaggaggtccagacccggctggcgggcatcgag
gagcgctacaaggaggtggtggagctgacgcgcctccgcaagcaggcgctgcaggacgct
ctggcgctctacaagatgctgacggaggcctgcgcctgcgaggtttggatcgacgagaag
gagcagtggctcaacagcatggacatccccgagaagctggaggacttggaggtcgtgcag
caccggtttgagagtctggagccggagatgaacaaccaggcgtcccgggtcgccgtggtg
aaccaggtcgcaaggcaactggtccactgcggacatcccagcgagaaggagatcaaaacc
cagcaggacaaactcaacaccaggtggagtcagttcagagacctggtggaccagaagaag
gacagcctgagctcagctctgggagtccagaactaccacctggagtgcaacgagaccaag
tcctggatcaaagagaagaccaaggtgatcgagtccacccaggagctcgggaacgacctg
gccggcgtcatggcgctgcagaggaagctgacggggatggagcgcgacctcgccgccatc
gaggacacgctgggcgacctgggcaaagaggccgaccgcctggcctcggaacacccggag
cagtccgaggccatcaagggccgtctggacggcatcaccggcgtctggggcgagatgaag
gacaccatgaagaaccgcgaggagtccctgggcgaggccagcaagctgcagcagttcctg
cgcgacctggacgacttccagtcgtggctgtcgcggacgcagactgccatcgcctcggag
gacatgcccaacgcgctggccgaggccgagaagctgctggcccagcacgagaacatcaag
aacgagatccgcaactacgaggaggactaccagaagatgcgcgacatgggcgagatggtg
acgcagggccagacggacgcgcagtacatgttcctgcggcagcggctgcaggcgctcgac
accggctggaacgagctgcacaagatgtgggagaaccggcagaacctgctgtcccagtcg
cacgcctaccagctgttcctccgggacaccaagcaggccgaggccttcctcaacaaccag
gagtacgtgctggctcacaccgagatgcccaccactctggagggggccgagggcgccatc
aagaagcaggaggacttcatgaccaccatggacgccaacgaggagaagatcatcggcgtg
gtcgacaccgggcgccgcctggtgaccgacggcaacatcaacgcggagcgcgcccaggag
aaggtggactccatcgaccagagacacaagaagaacagagcggctgccagcgacctgcag
tcgaggctgagggacaacagagacctgcagaggtttttgcaggactgccaggagctgtcc
ctgtggatcaacgagaagatgctgacggctcaggacatgtcgtacgacgaggccaggaac
ctccacagcaaatggctgaagcaccaggccttcatggccgagctgcagtccaacaaggag
tggctggacaagatcgacaaggacgggcaggagctgatggcggagaagccggagacggag
gccatggtgaaggagaagctggcgtccctgaagaccatgtgggaggagctggagtcgacc
acgaaggcgaaggccaagtgcctgttcgacgccaacaaggcggagctgttcacgcagagc
tgcgccgacatcgacaagtggctgggcggcctggacggccagctgcagtccgacgactac
ggcaaagacctcacctccgtcaacatcctgctgaagaagcagcagatcctggagagccag
gtggaggtgcgtcagaaggaggtgggggagctgcagggccagtcgcaggtcctcagccag
gagggcaagggctccgaggaggtggacggccagaggatcggcgtggagaagaagttccag
tccctccaggacccgctgaagaagaggcgggacaacctcatggcctcccgtgagatccac
cagttcaaccgcgacatggaggatgagatcctgtgggtggaagagaggatggcgttggcc
acgtccaccgaccacggaaacaacctgcagacggtgcagctgctcatcaagaagaaccag
accctgcagaaggagatccagggccaccagccgcgctacgacgacatcttcgagcgcagc
cagcacgtgctgcgggagagcagcccgacggccgaggtcatccggcagcgcctcgccgag
ctgcaagcgctctgggagcagatccgcaaggagacggagaagcggcacacccggctcagc
gaggcccacgaggcccagcagtactactttgacgccgccgaggccgaggcctggatgagc
gaacaggagctctacatgatgtcggaggagaaggccaaggacgagctgagttcggtggcc
atgctgaagaagcatcagatcctggagcaggccgtggaggactacgccgatgccgtccac
cagctgtccagcaccagccggggcctggtggccatcgagcaccccgacagcgagcgtatc
ggcatgcgtcagtctcaggtggacaagctgtacgccgggctgaaggacttgtcggaggag
cgccgggggaagctggacgagcgcctgcgtctcttccagctgaaccgggaagtggacgac
ctggagcagtggatcgccgagagggaggtggtggccggctcccacgagctgggccaggac
tacgagcacgtcaccatgctgcaggagcgcttcagagagttcgcccgcgacaccgggaac
atcggccaggagcgcgtggacaccgtcaaccagcaggcggacgagctgatcaacacgggc
cacggcgacgccgccaccatcgccgagtggaaggacggcctgaacgaggcctgggccgac
ctgctggagctcatcgacacgcgcacgcagatcctcgccgcctcctacgagctgcacaag
ttctacaacgacgccaaggagatcctcaaccgcatcctggacaagcacaagaagctgccg
gaggagctgggccgcgaccagaacaccgtggagaccctgcagaggatgcacaccaccttc
gagcacgacatccaggcactgggcatgcaggtgcggcagctccaggaggacgccatccgc
ctgcagtcggcgtacgccggagacaaagccgacgacattcagaagagggagggagaggtc
ctcgaggcctggaagcacctgatggaggcggcggagggccgccgggtgaagctggtcgag
accggagacaagttccgcttcgtcagcatggtgcgcgacctgatgctgtggatggaggac
gtcatccgcctgatcgaggcccaggagaagccccgggacgtgtcgtcggtggagctgctc
atgaacaaccaccagggcatcaaggcggagatcgacgcccgcaacgacagcttcacggcc
tgcatcgagctgggcaaggcgctgctggccaggaagcactacgcctcagaggagattaaa
gaaaagttgttacagttgacggacaagaggaaagacatgattgacaagtgggaggaccga
tgggagtggctgagactggtcctggaggtgcaccagttctcccgggacgcgggcgtggcg
gaggcgtggctgcagggtcaggacccctacctgtccagcagggagatcggccagaacgtg
gacgaggtggagaagctcatcaaacgccacgaggccttcgagaagtcggccgccacctgg
gaggagcgcttctccgccctggagaggctgaccacgatggagttattggaagtgcgaaga
atgcaagaggaagaagagaagaggagacaacccccgcccactgaggagcagcagcttggc
gacgctgcagcgcagcacagggagggcgagctggtgtctcagaacgggctgccgtccgat
caggagtccccgatggacggcgaaggtggagaggtggtcaacggcgtgtcggagcccagc
cccacggggtctcccggggccgctcgcaaggccaaggccagccaggcggcgaccctgccg
gccaagtcgcagcaggacgcccccacgtcccagctggagagcttcctgcaccgcaagcac
gagtgggaggggcacaacaagaaggcttcgagcaggtcgtggcacaacgtgtactgtgtg
atcaaccagcacgagatgggcttctacaaggatcagaagagcggcagtcagggcatcccc
taccacagcgagatccccgtcagcctgaaggacgccgtctgcgaggtggcgctggactac
aagaagaagaagcacgtcttcaagctcaagattaccgatgggaatgagtatctcttccaa
gccaaagatgacgaggagatgaacctgtggatctcggccatctcgaccgccatggcgtgc
gacaaggcggaggtgacgcccagcagccacagcacgcccgccccggccgcacgcgctcag
acgctgccggcctccgtcgccgtgacggcgacgccggcgccggagtccagcccgggcaaa
cgagagaaagacaaggagaagcgcttcagtctgttcagcaagaagaaatag
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integrated database retrieval system
