Pseudoliparis swirei (Mariana hadal snailfish): 130207227
Help
Entry
130207227 CDS
T09868
Symbol
sptbn1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130207227 (sptbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pswi04812
]
130207227 (sptbn1)
Cytoskeleton proteins [BR:
pswi04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
130207227 (sptbn1)
Intermediate filaments
Intermediate filament-binding proteins
130207227 (sptbn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
DYH2-5-8_CC
CH_2
BORCS6
Motif
Other DBs
NCBI-GeneID:
130207227
NCBI-ProteinID:
XP_056291701
LinkDB
All DBs
Position
17:14445407..14545416
Genome browser
AA seq
2356 aa
AA seq
DB search
MELQSATASGLPGPLSPTLDYALSPMSDGPSHGTSPNLSPGFSSQAAFNYNQLEGRFKQL
QDEREAVQKKTFVKWVNSHLSRVSCRITDLYMDLRDGRMLIKLLEVLSGEKLPKPTKGRM
RIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDIRVETED
NKEKKSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNAIVHKHRPDLIDFDKLKKS
NAHHNLQNAFNLAEQHLGLTKLLDAEDISVDHPDEKSIITYVVTYYHYFSKMKALKVEGK
RIGKVLDNAIETEKMVDKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYR
TAEKPPMFTEKGNLEVLLFTIQSKMRANNQKVYTPREGKLISDINKAWERLEKAEHEREL
ALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVDAATKKHEAIE
TDIAAYEERVKAVVSVAREMESENYHDIKRITARKDNVIRLWEYLLELLKARRLRLELTL
GLQRVFQEMLYIMDWMDEMKMMLLSQDYGKHLLGVEDLLQKHALVEADISVQADRVRNVN
RNAQKFADDMEGYKPCDPQIIRDRVAHMDFCYQELSQLAAERRARLEESRRLWKFFWEMA
EEEGWIREKEQILSSEDYGKDLTGALRLLSQHKAFEDEMSGRAGHLQQTIKQGEELVANN
HFGADKIKERIQDVQEQWAALERLSAVRKARLQEACNQHQFQADADDIDTWMLDVLRIVS
SVDVGHDEFSTQALVKKHKDVSEEIRSYRPVIEALHEQSRTLPPEKANSEEVQTRLAGIE
ERYKEVVELTRLRKQALQDALALYKMLTEACACEVWIDEKEQWLNSMDIPEKLEDLEVVQ
HRFESLEPEMNNQASRVAVVNQVARQLVHCGHPSEKEIKTQQDKLNTRWSQFRDLVDQKK
DSLSSALGVQNYHLECNETKSWIKEKTKVIESTQELGNDLAGVMALQRKLTGMERDLAAI
EDTLGDLGKEADRLASEHPEQSEAIKGRLDGITGVWGEMKDTMKNREESLGEASKLQQFL
RDLDDFQSWLSRTQTAIASEDMPNALAEAEKLLAQHENIKNEIRNYEEDYQKMRDMGEMV
TQGQTDAQYMFLRQRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAFLNNQ
EYVLAHTEMPTTLEGAEGAIKKQEDFMTTMDANEEKIIGVVDTGRRLVTDGNINAERAQE
KVDSIDQRHKKNRAAASDLQSRLRDNRDLQRFLQDCQELSLWINEKMLTAQDMSYDEARN
LHSKWLKHQAFMAELQSNKEWLDKIDKDGQELMAEKPETEAMVKEKLASLKTMWEELEST
TKAKAKCLFDANKAELFTQSCADIDKWLGGLDGQLQSDDYGKDLTSVNILLKKQQILESQ
VEVRQKEVGELQGQSQVLSQEGKGSEEVDGQRIGVEKKFQSLQDPLKKRRDNLMASREIH
QFNRDMEDEILWVEERMALATSTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRYDDIFERS
QHVLRESSPTAEVIRQRLAELQALWEQIRKETEKRHTRLSEAHEAQQYYFDAAEAEAWMS
EQELYMMSEEKAKDELSSVAMLKKHQILEQAVEDYADAVHQLSSTSRGLVAIEHPDSERI
GMRQSQVDKLYAGLKDLSEERRGKLDERLRLFQLNREVDDLEQWIAEREVVAGSHELGQD
YEHVTMLQERFREFARDTGNIGQERVDTVNQQADELINTGHGDAATIAEWKDGLNEAWAD
LLELIDTRTQILAASYELHKFYNDAKEILNRILDKHKKLPEELGRDQNTVETLQRMHTTF
EHDIQALGMQVRQLQEDAIRLQSAYAGDKADDIQKREGEVLEAWKHLMEAAEGRRVKLVE
TGDKFRFVSMVRDLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTA
CIELGKALLARKHYASEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVHQFSRDAGVA
EAWLQGQDPYLSSREIGQNVDEVEKLIKRHEAFEKSAATWEERFSALERLTTMELLEVRR
MQEEEEKRRQPPPTEEQQLGDAAAQHREGELVSQNGLPSDQESPMDGEGGEVVNGVSEPS
PTGSPGAARKAKASQAATLPAKSQQDAPTSQLESFLHRKHEWEGHNKKASSRSWHNVYCV
INQHEMGFYKDQKSGSQGIPYHSEIPVSLKDAVCEVALDYKKKKHVFKLKITDGNEYLFQ
AKDDEEMNLWISAISTAMACDKAEVTPSSHSTPAPAARAQTLPASVAVTATPAPESSPGK
REKDKEKRFSLFSKKK
NT seq
7071 nt
NT seq
+upstream
nt +downstream
nt
atggagcttcagagcgccaccgccagcggcctccccgggcccctgtccccgactttggac
tacgccttgtccccgatgtcggacggcccttctcatggcaccagccccaacctcagcccc
gggttctcgagccaggcggccttcaactacaaccagctggaggggaggttcaaacagctc
caagatgagcgcgaggcggtgcagaagaagaccttcgtcaagtgggtgaactctcacctg
tccagggtttcctgtcggatcaccgacctctacatggacctgagggacgggcgcatgctc
atcaagctgctggaggtcctgtcgggagagaagctgcccaaacccaccaagggccgcatg
aggatccactgcctggagaacgtggacaaggctctgcagttcctgaaggagcagagggtc
cacctggagaacatgggctcccacgacatcgtggacgggaaccaccgcctcaccctgggg
ctcatctggaccatcatcctccgcttccagatccaggacatccgagtggagacggaggac
aacaaggagaagaagtcggctaaagacgctctgctgctctggtgtcagatgaagacggcc
ggatatccaaacgtcaacatccacaacttcagcaccagctggagggacgggatggccttc
aacgccatcgtccacaaacacagaccggacctgatcgactttgataagctgaagaaatcc
aacgctcaccacaacctgcaaaatgccttcaacctggccgagcagcacctgggcctcacc
aagctgctggatgccgaggacatcagtgtggaccaccccgatgagaagtccatcatcacc
tacgtggtgacctactaccactacttctccaagatgaaggcgctgaaggtggaggggaag
agaatcggcaaggttctggacaacgccatcgagacggagaagatggttgacaagtacgag
tctctggcgtcggacctgctggagtggatcgagcagaccatcatcatcctcaacaacagg
aagttcgccaactctctggtgggcgtgcagcagcagctgcaggccttcaacacctaccgc
acggcagagaaaccgcccatgttcacagagaaggggaacctggaggttcttctgttcacc
atccagagcaagatgagagccaacaaccagaaggtttacactcctcgagaaggaaagctc
atctccgacatcaacaaggcgtgggagcgtctggagaaggcggagcacgagcgggagctc
gctctgaggacggagctgattcgccaggagaagctggagcagctggcgcggcgcttcgac
cgcaaagccgccatgagggagacgtggctgagcgagaaccagcggctcgtctcccaggat
aactttggatttgacctccaagccgtagacgctgctactaagaagcatgaagccatagaa
acagacatagccgcctacgaggagcgagtcaaggcggtggtttccgtggcgagggagatg
gagtctgagaattaccatgacatcaaacgcatcacggccaggaaggacaacgtgatccgg
ctgtgggagtacctgctagagctgctgaaggcccgccggctgagactggagctgacgctg
ggcctgcagagagtcttccaggagatgctctacatcatggactggatggatgagatgaag
atgatgctgctctctcaggactacgggaagcacctgctgggcgtggaggacctgcttcag
aagcacgctctggtggaggccgacatcagcgtccaggccgaccgagtccgcaacgtcaac
cgcaacgctcagaagttcgccgacgacatggagggttataaaccctgcgatcctcagatc
atcagggaccgcgtcgctcacatggatttctgctaccaggagctgagtcagctggcggct
gagcggcgagctcgcctcgaggagtcccgccgcctctggaagttcttctgggaaatggcc
gaagaggagggctggatccgggagaaggagcagatcctgtcctccgaggattacgggaag
gatctgacgggtgcgctgcgactgctgagtcagcacaaagccttcgaggacgagatgagc
ggccgagccggccacctgcagcagaccatcaaacagggcgaggagctggtggccaacaac
cacttcggagccgacaagatcaaagagcgcatccaggacgtccaggagcagtgggcggct
ctggagcgtctctccgccgtccgcaaagctcgtctgcaggaagcctgcaaccagcaccag
ttccaggccgacgccgacgacatcgacacgtggatgttggacgtgctgcgcatcgtctcc
agcgtggacgtcggccacgacgagttctccacgcaggctctggtgaagaaacacaaggac
gtgtccgaggagatccgcagctaccggcccgtcatcgaggcgctgcacgagcagtctcgc
acgctcccacccgagaaggccaactctgaggaggtccagacccggctggcgggcatcgag
gagcgctacaaggaggtggtggagctgacgcgcctccgcaagcaggcgctgcaggacgct
ctggcgctctacaagatgctgacggaggcctgcgcctgcgaggtttggatcgacgagaag
gagcagtggctcaacagcatggacatccccgagaagctggaggacttggaggtcgtgcag
caccggtttgagagtctggagccggagatgaacaaccaggcgtcccgggtcgccgtggtg
aaccaggtcgcaaggcaactggtccactgcggacatcccagcgagaaggagatcaaaacc
cagcaggacaaactcaacaccaggtggagtcagttcagagacctggtggaccagaagaag
gacagcctgagctcagctctgggagtccagaactaccacctggagtgcaacgagaccaag
tcctggatcaaagagaagaccaaggtgatcgagtccacccaggagctcgggaacgacctg
gccggcgtcatggcgctgcagaggaagctgacggggatggagcgcgacctcgccgccatc
gaggacacgctgggcgacctgggcaaagaggccgaccgcctggcctcggaacacccggag
cagtccgaggccatcaagggccgtctggacggcatcaccggcgtctggggcgagatgaag
gacaccatgaagaaccgcgaggagtccctgggcgaggccagcaagctgcagcagttcctg
cgcgacctggacgacttccagtcgtggctgtcgcggacgcagactgccatcgcctcggag
gacatgcccaacgcgctggccgaggccgagaagctgctggcccagcacgagaacatcaag
aacgagatccgcaactacgaggaggactaccagaagatgcgcgacatgggcgagatggtg
acgcagggccagacggacgcgcagtacatgttcctgcggcagcggctgcaggcgctcgac
accggctggaacgagctgcacaagatgtgggagaaccggcagaacctgctgtcccagtcg
cacgcctaccagctgttcctccgggacaccaagcaggccgaggccttcctcaacaaccag
gagtacgtgctggctcacaccgagatgcccaccactctggagggggccgagggcgccatc
aagaagcaggaggacttcatgaccaccatggacgccaacgaggagaagatcatcggcgtg
gtcgacaccgggcgccgcctggtgaccgacggcaacatcaacgcggagcgcgcccaggag
aaggtggactccatcgaccagagacacaagaagaacagagcggctgccagcgacctgcag
tcgaggctgagggacaacagagacctgcagaggtttttgcaggactgccaggagctgtcc
ctgtggatcaacgagaagatgctgacggctcaggacatgtcgtacgacgaggccaggaac
ctccacagcaaatggctgaagcaccaggccttcatggccgagctgcagtccaacaaggag
tggctggacaagatcgacaaggacgggcaggagctgatggcggagaagccggagacggag
gccatggtgaaggagaagctggcgtccctgaagaccatgtgggaggagctggagtcgacc
acgaaggcgaaggccaagtgcctgttcgacgccaacaaggcggagctgttcacgcagagc
tgcgccgacatcgacaagtggctgggcggcctggacggccagctgcagtccgacgactac
ggcaaagacctcacctccgtcaacatcctgctgaagaagcagcagatcctggagagccag
gtggaggtgcgtcagaaggaggtgggggagctgcagggccagtcgcaggtcctcagccag
gagggcaagggctccgaggaggtggacggccagaggatcggcgtggagaagaagttccag
tccctccaggacccgctgaagaagaggcgggacaacctcatggcctcccgtgagatccac
cagttcaaccgcgacatggaggatgagatcctgtgggtggaagagaggatggcgttggcc
acgtccaccgaccacggaaacaacctgcagacggtgcagctgctcatcaagaagaaccag
accctgcagaaggagatccagggccaccagccgcgctacgacgacatcttcgagcgcagc
cagcacgtgctgcgggagagcagcccgacggccgaggtcatccggcagcgcctcgccgag
ctgcaagcgctctgggagcagatccgcaaggagacggagaagcggcacacccggctcagc
gaggcccacgaggcccagcagtactactttgacgccgccgaggccgaggcctggatgagc
gaacaggagctctacatgatgtcggaggagaaggccaaggacgagctgagttcggtggcc
atgctgaagaagcatcagatcctggagcaggccgtggaggactacgccgatgccgtccac
cagctgtccagcaccagccggggcctggtggccatcgagcaccccgacagcgagcgtatc
ggcatgcgtcagtctcaggtggacaagctgtacgccgggctgaaggacttgtcggaggag
cgccgggggaagctggacgagcgcctgcgtctcttccagctgaaccgggaagtggacgac
ctggagcagtggatcgccgagagggaggtggtggccggctcccacgagctgggccaggac
tacgagcacgtcaccatgctgcaggagcgcttcagagagttcgcccgcgacaccgggaac
atcggccaggagcgcgtggacaccgtcaaccagcaggcggacgagctgatcaacacgggc
cacggcgacgccgccaccatcgccgagtggaaggacggcctgaacgaggcctgggccgac
ctgctggagctcatcgacacgcgcacgcagatcctcgccgcctcctacgagctgcacaag
ttctacaacgacgccaaggagatcctcaaccgcatcctggacaagcacaagaagctgccg
gaggagctgggccgcgaccagaacaccgtggagaccctgcagaggatgcacaccaccttc
gagcacgacatccaggcactgggcatgcaggtgcggcagctccaggaggacgccatccgc
ctgcagtcggcgtacgccggagacaaagccgacgacattcagaagagggagggagaggtc
ctcgaggcctggaagcacctgatggaggcggcggagggccgccgggtgaagctggtcgag
accggagacaagttccgcttcgtcagcatggtgcgcgacctgatgctgtggatggaggac
gtcatccgcctgatcgaggcccaggagaagccccgggacgtgtcgtcggtggagctgctc
atgaacaaccaccagggcatcaaggcggagatcgacgcccgcaacgacagcttcacggcc
tgcatcgagctgggcaaggcgctgctggccaggaagcactacgcctcagaggagattaaa
gaaaagttgttacagttgacggacaagaggaaagacatgattgacaagtgggaggaccga
tgggagtggctgagactggtcctggaggtgcaccagttctcccgggacgcgggcgtggcg
gaggcgtggctgcagggtcaggacccctacctgtccagcagggagatcggccagaacgtg
gacgaggtggagaagctcatcaaacgccacgaggccttcgagaagtcggccgccacctgg
gaggagcgcttctccgccctggagaggctgaccacgatggagttattggaagtgcgaaga
atgcaagaggaagaagagaagaggagacaacccccgcccactgaggagcagcagcttggc
gacgctgcagcgcagcacagggagggcgagctggtgtctcagaacgggctgccgtccgat
caggagtccccgatggacggcgaaggtggagaggtggtcaacggcgtgtcggagcccagc
cccacggggtctcccggggccgctcgcaaggccaaggccagccaggcggcgaccctgccg
gccaagtcgcagcaggacgcccccacgtcccagctggagagcttcctgcaccgcaagcac
gagtgggaggggcacaacaagaaggcttcgagcaggtcgtggcacaacgtgtactgtgtg
atcaaccagcacgagatgggcttctacaaggatcagaagagcggcagtcagggcatcccc
taccacagcgagatccccgtcagcctgaaggacgccgtctgcgaggtggcgctggactac
aagaagaagaagcacgtcttcaagctcaagattaccgatgggaatgagtatctcttccaa
gccaaagatgacgaggagatgaacctgtggatctcggccatctcgaccgccatggcgtgc
gacaaggcggaggtgacgcccagcagccacagcacgcccgccccggccgcacgcgctcag
acgctgccggcctccgtcgccgtgacggcgacgccggcgccggagtccagcccgggcaaa
cgagagaaagacaaggagaagcgcttcagtctgttcagcaagaagaaatag
DBGET
integrated database retrieval system
