Pseudoliparis swirei (Mariana hadal snailfish): 130207236
Help
Entry
130207236 CDS
T09868
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6
KO
K10841
DNA excision repair protein ERCC-6
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
130207236 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130207236 (ercc6)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130207236 (ercc6)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
130207236 (ercc6)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
130207236 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
130207236
NCBI-ProteinID:
XP_056291715
LinkDB
All DBs
Position
17:12361854..12376598
Genome browser
AA seq
1430 aa
AA seq
DB search
MPVDGSEDQLPSSLSSPASAALTPGGTDEDGSTGGSAVCSFPENNQGSEAAAAYPANTGP
GEGNSGGTRSGALLQIDRQRIQAACASSGANELQGLGVAVYDHDVLEQGVLQQVDEAIQE
ANQAAAKAEAEKEYHSVLDDVRSVTASLKQINKIIEQLSPNAASSKDIIRKIESVKRQKE
NKEKQLKKVKAKQKRLQAILGGEDTQRVEAELLAEDNEKEEAGPSTLGSMLMPAQETEWE
ELIRKGHMTPFGTRIPQKEEKKKPRKVMLENSAFDMYLADQAKMATERRKVPLLKKKRSS
GIRSDKAGGKINRIVSKDKKMKKRIQKLQISALKAHPKARPKVEPRLPKPKSKRHTRREE
TDSEGSEYLPSDEGINPDQEEREAMEEGFGDDDEEMYELKPYNKKSVGKGRKKLKKKEES
EEEYCPESSDEEDAKDKDKKNKDDGNVEYYRQRIRRWKRQRLGEREAKRERGKELSDDSD
EEFDEGFKVPGFLWRKLYKYQQTGVRWMWELHCQQAGGILGDEMGLGKTIQVICFLAGLS
YSKLRTRGSNYRYVGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAVLHETGSFTSSKEKL
IPEIAACHGILITSYSAVRNLRETLQRFDWHYIILDEGHKIRNPNAGVTTASKQFRTPHR
LILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYCNASPVQVQTAFKC
ACVLRDTINPYLLRRMKADVKDNLSLPDKNEQVLFCRLTEDQRQVYQTFLDSKEVYQMLK
GDMHIFSGLIALRKICNHPDLLSGGPRILKGVPDDQLTKAEHFGFWKRSGKLIVVESLLR
LWLKQGHRVLLFTMLNILEVFVTENNYSYVKMDGTTSIASRQPLIARYNENKSIYIFLLT
TKVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLLTAGTIEEKIY
HRQIFKQFLTNRVLKDPKQRRFFKSNDIYELFTLTDPDKNQGTETSALFAGTGSDVKVPK
KPQRPMPSHTVKHSSHIHKHSLANQNETTNIPALRDGSTSPSRKNSPGKPADGHCTKQNG
LVIEPNISANSHHTGQNNRDWNRAKPAVKNSSGAHQPRDKDAALRSPQKHREKRKHCDSV
DSDKRKRTKRKHSKDSRCEGHRISHLVKKGSFQNAESEEYETEKTSDDYVLAKLFKKSGI
HSVMQHDTIMESSNPDYVLVEAEANRVARDALKALKVSRQQCRRSFNRPAPPPARKRFGQ
KNNSLLVAPSAQSVPTLSRCKDAAIVKKSVPMKPGSGAHFSGEGAESDLNVAPLSSSSLL
AKIKARNHLSIPSSQREGAEEEEDDSDAPGRSSTPAPPTEHDELLVDVRNFMAFQANVDG
QATTQEVLEYFKPRLTEKQAPVFRELLRSICDFQRTSGQEGMWRLKEHFR
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtggacggttcagaggaccagctgccctcctcgctctccagccctgccagtgct
gccctcaccccgggagggacagatgaggacgggtctacggggggctcggcagtctgctct
ttccctgaaaacaatcagggctctgaggctgcggcagcctaccctgccaacactggacct
ggggagggcaacagcggtgggacgaggtctggagccttgctgcagatcgatcgacagcgt
attcaagcagcatgtgccagttctggagccaatgaactccagggccttggcgtggctgtg
tatgaccatgacgtccttgagcaaggtgttctccagcaagtggatgaggcaattcaggag
gccaatcaggctgctgctaaagctgaggctgagaaggaataccactctgtgcttgatgat
gtcaggtccgtcacagcatctcttaaacaaatcaacaagattatcgagcagctgtccccc
aatgctgcctccagtaaagatatcattaggaagatcgaatctgtcaaacgacagaaagaa
aataaggagaaacagctgaagaaagtcaaagccaaacaaaagcgacttcaggccattctg
ggaggagaggatacccaacgggtagaagctgagcttttggcggaagataatgaaaaggag
gaagccgggccatcaacactgggcagtatgcttatgcctgctcaggagaccgaatgggag
gagcttatccggaaaggtcacatgactccttttggaactcgaatcccacagaaagaggaa
aaaaagaagcctcgaaaagtgatgcttgaaaactcagcctttgacatgtacttggcggac
caggccaagatggctactgagaggaggaaagtgcctcttctcaagaagaaaaggagctca
ggaatcagatcagataaagccggggggaaaattaatagaattgtttccaaggacaaaaag
atgaagaagcgcatccaaaagcttcagatatcagctctgaaggcccatcctaaagctcgg
cctaaggttgagccccggctccctaaaccaaagagcaagcgtcacactcggcgtgaggag
acagacagcgagggttcagagtacctgcccagtgatgaaggcattaatcctgaccaggag
gaaagggaagccatggaggagggcttcggggacgatgatgaagaaatgtatgagttgaaa
ccatacaataagaaaagtgtagggaaagggaggaagaaattaaagaaaaaagaggagagt
gaggaagaatactgccctgagagttcagatgaagaggatgcgaaggataaagacaaaaag
aacaaagatgatggaaatgtggaatactacagacagcgaataaggagatggaagcgacag
cgtcttggagaaagggaggcaaagagagaaaggggtaaggagctttcagatgacagtgat
gaagaatttgacgaaggcttcaaagtccctggtttcctctggagaaaactttacaagtac
cagcagacaggtgtgcggtggatgtgggaactccactgtcagcaggcagggggcatcctg
ggagatgagatgggattgggtaaaaccatccaggtcatctgctttctggctggactgagc
tacagcaaactgaggaccagaggatctaactacagatacgttggcctgggtccgacggtc
atcgtgtgcccagctacagtgatgcaccagtgggtaaaggagtttcacacctggtggcct
ccttttagagtggctgtactacatgaaactggctcgttcaccagcagcaaggaaaagctt
attccagagatagcagcatgccatggtatcctgataacttcatattcagctgtgaggaat
ttgcgagaaaccctgcagcgcttcgattggcactacattatactggatgagggccataag
atcaggaatccaaacgctggagtcaccactgcctccaaacagtttcgcactccccacagg
ttaatcctgtcgggatctcccatgcagaacaatttgaaggagctgtggtctctgtttgac
tttgtcttccccggcaaactggggacactgcctgtcttcatggagcagttctctgtgccg
atcaccatgggaggatactgcaatgcctcgcctgtgcaggtccaaactgcttttaagtgt
gcatgcgtgctgagggacaccatcaatccgtacctgctcagaaggatgaaggcagatgtc
aaggacaacctgtccttacctgacaaaaatgaacaggttttgttttgcagattaacagag
gaccagcggcaggtttatcagaccttcttagattccaaagaggtctaccagatgctaaaa
ggggacatgcacatattctcaggtttgatagcactacgtaagatctgtaaccatcccgac
ctactctccggcggcccccggattttgaagggagttccagatgaccagctaactaaagcg
gaacactttggcttttggaaacgttcaggcaagctgatcgtcgtggagtctttgctgcga
ctctggttgaaacagggccacagagtcctgctcttcacaatgttgaacatcttggaggta
tttgtgacggagaataattactcgtacgtgaaaatggacggcactacctcgatagcttcc
cgacagcccctcatcgctcggtacaacgagaacaaatccatttatatcttcttgttgact
actaaagtcggaggtctgggagtcaatctgactggagccaatagagtcataatctatgac
ccagactggaaccctagtaccgacacacaggcacgggagcgagcatggaggattggtcag
aagcagcaagtgacggtctacagattgctgactgcagggaccattgaagagaagatttac
cacagacaaatcttcaaacagtttctgaccaaccgtgttctgaaggaccccaaacaacgg
cggttcttcaagtctaacgacatctatgagctcttcacactgactgaccctgataaaaac
cagggaacagagaccagtgccctatttgcaggtacagggtctgatgtcaaggtacccaag
aaacctcagaggccaatgccatcacacacagtaaaacatagcagtcacatccataaacac
tccttagcgaaccagaatgaaaccacaaacattcctgcattaagagacggaagcacttcc
ccgagcagaaagaactctccgggtaaaccagcagacggtcactgcactaagcaaaatggc
ctcgttatagagcctaatatttcagcaaattcacaccatacaggacaaaataacagagac
tggaacagagccaagccagcagtgaaaaactcatccggcgctcaccaaccccgagacaaa
gacgcggccctgcggagcccgcagaagcacagggaaaagaggaagcactgcgactccgtg
gactcagacaaacgcaaacgcacgaagcgtaaacactccaaggattctcggtgtgaaggc
caccgcatctctcacttggtgaagaaaggatcctttcagaatgcagagagtgaagaatat
gagacagagaagacatccgatgattatgtcctggcaaagctcttcaagaaatctggtatc
cacagtgtgatgcagcatgacaccatcatggagtcctccaacccggactatgtcctcgtg
gaggcagaagccaacagggtggccagagatgctctgaaagcactgaaggtttctcggcag
cagtgcaggcggtcctttaacagacccgctcctccacctgcacggaaacggtttggacaa
aagaataattccctcctggttgcaccttccgctcagtcggtccccactttgagtagatgc
aaggatgctgctattgtaaagaagtctgtgccaatgaagcccggttcaggagctcatttc
agtggggagggcgcagaaagtgacctaaacgtcgccccactctcctcctcctccctgctg
gccaagattaaagcccgtaatcatctcagcataccctccagccaaagagaaggagcggaa
gaagaggaggacgactctgacgccccgggaaggagctccaccccagctccgcccactgag
catgacgagctgttggtggatgtacgcaacttcatggccttccaggcgaatgtggacgga
caggccaccacccaggaagtgctggagtatttcaagccgagactgaccgagaagcaggcg
cccgtcttcagagagctgctcaggagcatctgtgacttccagaggacttctggtcaggag
ggcatgtggagactgaaggagcacttccgctga
DBGET
integrated database retrieval system
