Pseudoliparis swirei (Mariana hadal snailfish): 130207323
Help
Entry
130207323 CDS
T09868
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130207323 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130207323 (herc4)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
130207323 (herc4)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
HECT type E3
130207323 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
QSregVF_b
Motif
Other DBs
NCBI-GeneID:
130207323
NCBI-ProteinID:
XP_056291834
LinkDB
All DBs
Position
17:complement(1212128..1220545)
Genome browser
AA seq
1044 aa
AA seq
DB search
MLCWGNASDGQLGLGGIDEEIVVEPRRCEFFHGKQVCDVGCGLRHTAFLLEDGTVYTCGC
NDLGQLGHEKARKRPEQVVALEAQIVLAVSCGESHTLALNDKGQVFSWGRGSDGQLGLHN
FEECVRVPRNIRSLSEVQVAQVACGYWHSHALSRGGQVFSWGQNRYGQLGLGSRGPGVSS
PTLLRSLQSVPFAQLAAGGAHSFALTLSGAAFGWGRNHFGQLGLSDCNDRFSPSLLKSLR
SQRVIHISCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTHHEVNPRKVFELMGNVVTQIS
CGRQHTLAFTPSCGKMDSFGLAGNGQLGTRSTCNRKSPATVSGPWAASRDPDSEPCCYVR
RIYAGGDQSFAHYCSTNKAQSMEDVRNQDPHRKICTLNQEIIHKWCSYSPGRLPLDISNE
IDLVFSSASCLNGSFLSTSHPDHYSTSSRCSGVDMTTARLLWSRLGQRGPHELTQQIAAS
LEKNLIPRLSPSPPDIEALRLYLTLPECALFRDRNNYVTIAIPFAKALLSLKEAPLKVLG
NWWSACEPPVFQRLVELYKEVVVYLLQMHKMGIPSVEQRIFTCFLDTSLRLLEVLHTVSE
RAGHIIRYDSFYIHELDQLIDIRQDYVTWVQRQMYPSGHDGAVTLCQFPFVFDAQAKTTL
LQTDAVIQMQMAVDQAQMQNFSSMFLPAVESVNPCLILIVRRENIVGDAMEVLRKSKNVD
YKKPLKVVFVGEEAVDAGGVRKEFFLLIMKELLDPKYGMFRYYEESRLIWFSNKTFEDID
LFNLIGVVCGLAIYNLTIVELNFPVALYKKLLKRKPTLDDLKELMPDVGRSLQQLLDYTG
DDLEETFCLNFTITEENYGATEVLELVRNGEDVNVTKSNRQDFVSAYVDHVFDASVAALF
ECFHAGFHKVCGGKVLELFQPNELQAMVIGNTDYDWTELEKSTEYKGEYWAEHPTIGLFW
SVFHRLPLEEKKLFLLFLTGSDRIPILGMKSLKLVIQPTGGGEQYLPVAHTCFNLLDLPK
YSSEETLREKLLQAIDYNQGFNLA
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctggggcaacgcctccgacggacagctgggcctgggtgggatcgacgaggag
atcgtggttgagccgcgacgatgtgaattcttccacgggaagcaggtgtgcgacgtgggg
tgcggcctccgacacaccgccttcctgctggaggacgggacggtgtacacctgtggctgc
aacgacctgggccagctgggccacgagaaggccaggaagagaccagagcaggtcgtggcc
ctggaggctcagatcgtcctggccgtctcctgtggcgagtcccacacgctggccctgaat
gacaagggccaggtgttctcgtggggtcggggctccgacggccagctgggcctgcacaac
tttgaggagtgtgtgcgcgtgcccaggaacatcaggagcctgtccgaggtgcaggtggct
caggtggcctgtggctactggcactcccacgccctctccagagggggccaggtcttctcc
tgggggcagaaccggtacgggcagctgggcctgggctctcgcggcccgggcgtctcctct
cccacgctgctgcgctccctgcagagcgtccccttcgcccagctggcggccggcggcgct
cacagcttcgcgctcacgctctcgggagccgccttcggctggggccgcaaccacttcggt
cagctggggctcagcgactgcaacgatcgtttttctccgtcgttgctgaagtccctgaga
tctcagagagtgatccacatctcctgtggagaagatcacacggccgctctcaccaaggaa
ggaggcgtgttcacgttcggcgccggaggatacggccagctgggacacaactccacccac
cacgaggtcaaccccaggaaggtgttcgagctcatgggcaacgtcgtcacgcagatctcc
tgtggcaggcagcacacgctggccttcacgccctcctgtgggaagatggactccttcggg
ctggcgggcaacgggcagctggggactcgctccacctgcaacaggaagagcccggccacg
gtcagcgggccctgggcggcctccagggacccagactctgagccgtgctgctacgtcagg
aggatttacgccggaggagaccagagctttgctcactactgctccaccaacaaagcccag
agcatggaggacgtgaggaaccaagacccccacaggaagatctgcaccctgaaccaggag
atcatccacaagtggtgtagctacagcccaggaagactcccgctggacatctccaatgag
atcgacctcgtgttctcctccgcaagctgcctcaacgggtcctttctgtccaccagtcac
ccggaccactacagcaccagcagccgatgctccggcgtggacatgaccacggctcgcctc
ctgtggagccgcctgggccaacgaggcccccacgagctcacccagcagatcgcagccagt
ctggagaagaacctgatccccaggctgagcccctcccctccggacatcgaggccctgcgg
ctctacctcactcttcctgaatgcgctctcttcagggaccggaacaactacgtcaccatc
gccatcccgtttgccaaggccctgctgagcctgaaggaggcgccgctgaaggttctgggg
aactggtggtccgcatgcgagccccccgtgttccagcggctggtggagctgtacaaggag
gtggtggtgtacctgctgcagatgcacaagatgggcatcccctcggtggagcagaggatc
ttcacctgcttcctggacacgtcgctccggctcctggaggtcctgcacacggtgagcgag
cgggccggtcacatcatccgctacgacagcttctacatccacgagctggaccagctcatc
gacatcagacaggactacgtcacctgggtccagaggcagatgtacccgtcgggccacgac
ggcgcggtgaccctgtgccagtttcccttcgtgttcgacgcccaggcgaagaccacgctg
ctgcagaccgacgccgtcatccagatgcagatggccgtggaccaggcgcagatgcagaac
ttcagctccatgttcctgccggcggtggagtccgtcaacccgtgtctcatcctcatcgtt
cggcgggagaacatcgttggagacgccatggaggtcctcaggaagtccaagaatgtggac
tacaagaaacccctgaaggtggtgttcgtgggggaggaggcggtggatgcaggaggcgtg
aggaaggagttcttcctcctcatcatgaaggagctgctggacccaaagtacgggatgttc
cgctactacgaggagtcgcggctcatctggttctccaacaagaccttcgaggacatcgac
ttgttcaacctcatcggggtggtctgtggtctggccatctacaacctcaccatcgtggag
ctcaacttccccgtggcgctctacaagaagctgctgaagaggaagccgacgctcgacgac
ctgaaggagctcatgccggacgtgggaaggagcctgcagcagctgctggactacaccgga
gacgacctggaggagaccttctgcctcaacttcacaatcacagaggagaactacggggcc
acggaggtcctggagctggtccggaacggggaagacgtcaacgtcaccaaatccaacagg
caggacttcgtctctgcgtacgtggaccacgtgttcgacgcgtccgtggcggcgctgttc
gagtgcttccacgccggcttccacaaggtgtgcggggggaaggtgctggagctgttccag
cccaacgagctgcaggccatggtcatcgggaacaccgactacgactggacggagctggaa
aagagcacggagtacaaaggggagtactgggcggagcaccccaccatcgggctcttctgg
tccgtgttccaccggctgcctctggaggagaagaagctgttcctcttgttcctcacagga
agtgaccgcattcccattttgggcatgaaaagcctgaagctggtgatccagcccaccggc
ggaggcgagcagtacctcccggtggcccacacctgcttcaacctgctggacctgcccaag
tacagcagcgaggagacgctccgcgagaagctgctgcaagccatcgactacaaccagggc
ttcaacctggcctga
DBGET
integrated database retrieval system
